Digital Commons Network^™

Multispecies Genomic Sex Identification Using Ddx3 Gene Polymorphisms, Jessica Felts

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

PCR sex determination assays must be reliable and cost effective due to the frequent and integral use of these assays in biological research and the animal production industry. Thus, the design of proof of a primer pair with a built-in control is warranted to not only bypass the extra cost of a multiplex reaction, but also to prevent anomalous results that have been documented with other primer pairs.

The objective of this study was to design primer pairs with built in PCR amplification control to identify sex in Equus caballus (domestic horse), Homo sapiens (humans), Macaca mulatta (rhesus macaque), and …

The Effects Of Recent Climate Change On Spring Phenology, With A Special Focus On Patterns Of Bee Foraging, Michael Stemkovski

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The date on which plants flower and on which bees begin to pollinate varies year-to-year depending on differences in weather. This seasonal timing is known as phenology, and it is already clear that climate change has pushed the spring phenology of many species earlier by increasing temperatures. This is particularly clear in flowering plants, but studying how and why the phenology of pollinators is shifting is more difficult. Most flowering plants rely on pollinators such as bees for their reproduction, and most bees rely on flowers for their sustenance, so bee and flower phenology has to overlap for the crucial …

Fractally Sampling Diversity-Environment Relationships To Understand Plant Assemblage Health Across Spatial Scales, Elizabeth G. Simpson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Humans influence the health of ecosystems and rely on healthy ecosystems to support their livelihoods and well-being. By looking at how the parts of ecosystems interact we can understand and improve ecosystem health. Ecosystem interactions change across spatial scales or different size patches of area. For example, individual organisms interact with each other at small spatial scales, while at large spatial scales, communities of organisms interact with weather conditions. However, many research studies do not look at how ecosystem interactions change across spatial scales. To address this gap in ecological research, I use a fractal sampling design which samples at …

Habitat Selection By Desert Carnivores: How Water, Intraguild Predation, And Prey Impact Animal Space Use, Nadine A. Pershyn

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Across North America large carnivores have lost nearly half of their historic range, creating openings for smaller (< 15 kg) carnivores to take over their ecological roles. Coyotes (Canis latrans) have seen a significant range expansion, including into arid deserts. It was believed that the addition of artificial water sources by humans allowed coyotes to expand into desert ecosystems where they were previously unable to survive. The kit fox (Vulpes macrotis) is a small, desert-adapted carnivore with declining populations that faces threats from coyotes of intraguild predation. This is when carnivores compete over the same prey, and the larger carnivore (intraguild predator) kills the smaller carnivore (intraguild …

Avian Species Distribution Models: Using Location Data To Inform Management Decisions, Marilyn E. Wright

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Both state and federal wildlife agencies strive to conserve and protect wildlife and their habitats as an important public resource. Applied management decisions often rely on being able to obtain data that can efficiently and effectively enhance the understanding of these systems for informing management actions. Wildlife managers often focus efforts on a small subset of species from an ecosystem, typically called focal species, who can serve as surrogates for understanding the health and function of the system. Models that consider how these focal species interact with the ecosystem are often used to better understand important aspects of their life …

Detecting Ecosystem Response To Restoration Efforts With Implications For Recovery Of The Threatened June Sucker (Chasmistes Liorus) In A Shallow, Eutrophic, Utah Lake, Ryan D. Dillingham

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Environmental damage associated with a growing human population will increase globally without active management. Restoration can promote ecosystem recovery, yet often fails to produce desired results and may require decades to achieve noticeable benefits. Detecting small, incremental change sis imperative in these difficult situations. Here, I demonstrate that restoration focused on fish removal triggers incremental responses in aquatic plants and animals. Removing common carp is expected to encourage recovery of aquatic plants, increasing animal habitat, resulting in more macroinvertebrates (e.g., aquatic insects, snails). Carp removal should also increase water clarity, improving visibility for fishes, thus increasing their ability to find …

Assessing The Relationship Between Geophytes And The Archaeological Presence Of Maize In North America, Paige Dorsey

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

This thesis investigates the possible relationship between the archaeological presence of maize, in the United States, and historical environmental variables, rainfall and temperature, in addition to the number of underground plants that store energy and nutrients, in a given area. The thought behind this is that where the abundance of these underground plant species is highest, the lower the number of archaeological sites containing maize because such resources were a more attractive alternative food than maize. Conversely, where geophytes are less abundant, archaeological instances of maize should be more abundant because maize is a better option in such environments for …

Climate-Driven Impacts Of Warming And Grazing On Sub-Arctic Coastal Wetlands In Alaska, Ryan T. Choi

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Climate change is rapidly warming the Arctic, especially at lower latitudes. Warmer temperatures and earlier springs are altering the timing of plants and animals, especially for long-distance migratory herbivores. Changes in the timing of both plants and herbivores have the potential to impact plant productivity and nutrient cycling, while also altering plant community diversity and composition.

In chapter 2, I conducted a field experiment to investigate how earlier growing seasons and differences in arrival times of migratory geese influence physical traits of sedge forage species. I found that both an earlier growing season and late grazing by geese had similar …

Accounting For Critical Attributes And Uncertainty In Flow-Ecology Relationships, Elizabeth Decker Morgan

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Environmental flows are used to maintain streamflow for aquatic species in rivers while also sustaining human water requirements. While there are many approaches to develop environmental flows, they all rely on a strong conceptual understanding of flow-ecology relationships, which are often uncertain. Uncertainty in flow-ecology relationships can stem from using limited data to develop or test relationships or an incomplete understanding of the attributes inherent to each relationship, such as climate and land conditions. Accounting for these attributes and uncertainty in flow-ecology relationships is critical given mounting interest to develop and implement environmental flows at large scales, often with limited …

Novel Polymorphisms Of Zrsr2 And Gpm6b Gene Homologs And Their Use In Sex Identification Of Bovine And Porcine Species, Evan K. Peterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Accurate and cost-effective PCR based sex identification is important in animal production because it gives producers the ability to determine the sex of embryos prior to transfer, saving time and money. The most efficient PCR sex identification assays work by using a single primer pair to amplify a specific target region located on the Y-chromosome and a second, separate target region on the X-chromosome.

This thesis reports the design of two novel assays. The first assay was designed to target the Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 (ZRSR2) gene found on the X-chromosome and its Y-chromosome …

Analyzing The Von Neumann Entropy Of Contact Networks, Thomas J. Brower

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

When modeling the spread of disease, ecologists use ecological or contact networks to model how species interact with their environment and one another. The structure of these networks can vary widely depending on the study, where the nodes of a network can be defined as individuals, groups, or locations among other things. With this wide range of definition and with the difficulty of collecting samples, it is difficult to capture every factor of every population. Thus ecologists are limited to creating smaller networks that both fit their budget as well as what is reasonable within the population of interest. With …

Ecoacoustic Methods For Multi-Taxa Animal Surveys In The Amazon, Leandro A. Do Nascimento

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Tropical regions host most of the biodiversity found on Earth, but these species-rich areas are constantly threatened by human development and other disturbances that put this diversity of life forms at risk. To avoid extirpations of animal and plant species, scientists and managers rely on accurate monitoring techniques to retrieve information about population trends. This task is not easy, especially in the tropics, where there is often a lack of personnel to conduct surveys, a lack of funding, and the areas are so extensive that many countries need to be involved in monitoring (e.g., Amazon biome). For this reason, scientists …

Kudos And K.O.M.'S: The Effect Of Strava Use On Evaluations Of Social And Managerial Conditions, Perceptions Of Ecological Impacts, And Mountain Bike Spatial Behavior, Noah E. Creany

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Smartphone based self-tracking fitness applications (apps) like Strava are increasingly becoming a part of recreation experiences in parks and protected areas (PPAs). Recreation research has employed smartphone GPS tracking (SGT) and volunteered geographic information (VGI) to study visitor behavior in PPAs, but little is understood about how smartphones or fitness apps affect visitor perceptions and behavior during their experience.

The first chapter of this thesis is a literature review of recreation survey and behavior research, social-psychology and technology use theory, gamification, and mountain bike social science and recreation-ecology research. The second chapter is formatted for submission to the Journal of …

Boundaries And Bridges In Rangeland Social-Ecological Systems: Studies Of Collaboration, Innovation, And Information Flow, Gwendŵr R. Meredith

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Public rangelands are managed by a mixture of federal, state, and local governments. Often, these groups are charged with managing adjacent lands that are part of the same greater landscape. To do this effectively, communication and collaboration is required. This dissertation examines federal, state, and local agencies’ level of communication through three projects.

The first project examined barriers to agencies adopting management tools from each other. I found that individuals within agencies were mainly staying within their own agency when seeking advice, so individuals were not communicating about tools or their findings across agencies. Furthermore, agency policies and fear of …

The Factors Affecting Wind Erosion In Southern Utah, Mehmet Ozturk

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Wind erosion is a global issue and affecting millions of people in drylands by causing environmental issues (acceleration of snow melting), public health concerns (respiratory diseases), and socioeconomic problems (costs of damages and cleaning public properties after dust storms). Disturbances in drylands can be irreversible, thus leading to natural disasters such as the 1930s Dust Bowl. With increasing attention on aeolian studies, many studies have been conducted using ground-based measurements or wind tunnel studies. Ground-based measurements are important for validating model predictions and testing the effect and interactions of different factors known to affect wind erosion. Here, a machine-learning model …

Why Do They Do That? Understanding Factors Influencing Visitor Spatial Behavior In Parks And Protected Areas, Abigail M. Sisneros-Kidd

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Visitors to parks and protected areas within the United States and worldwide often visit these areas with a particular destination in mind, such as seeing Old Faithful erupt in Yellowstone National Park or standing on the rim of the Grand Canyon in Grand Canyon National Park. These visitor use destinations, and the pathways leading to them, such as trails and roadways, see high levels of use, and as a result, impacts to soil, vegetation, air, water, soundscapes, and night skies that result from this use. The field of recreation ecology studies these impacts to park and protected area resources resulting …

Ecology Of Greater Sage-Grouse Inhabiting The Southern Portion Of The Rich-Morgan-Summit Sage-Grouse Management Area, M. Brandon Flack

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Greater sage-grouse (Centrocercus urophasianus; sage-grouse) are sagebrush obligates and are therefore considered to be key indicators of sagebrush ecosystem health. Sage-grouse populations have declined range-wide over the last century due to loss and fragmentation of sagebrush (Artemisia spp.) habitats. Sage-grouse populations found in large intact sagebrush landscapes are considered to be more resilient, however, some small isolated populations persist and thrive in fragmented landscapes. Because of Utah’s unique topography and geography, sage-grouse habitat is discontinuous and populations are naturally dispersed throughout the state in suitable intact blocks or in disconnected islands of sagebrush habitat. Thus, Utah populations …

A Comparison Of Five Statistical Methods For Predicting Stream Temperature Across Stream Networks, Maike F. Holthuijzen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The health of freshwater aquatic systems, particularly stream networks, is mainly influenced by water temperature, which controls biological processes and influences species distributions and aquatic biodiversity. Thermal regimes of rivers are likely to change in the future, due to climate change and other anthropogenic impacts, and our ability to predict stream temperatures will be critical in understanding distribution shifts of aquatic biota. Spatial statistical network models take into account spatial relationships but have drawbacks, including high computation times and data pre-processing requirements. Machine learning techniques and generalized additive models (GAM) are promising alternatives to the SSN model. Two machine learning …

Natural And Anthropogenic Effects On Life History Characteristics In The Side-Blotched Lizard (Uta Stansburiana), Geoffrey David Stuart Smith

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Survival is a prerequisite for successful reproduction, and is thus intertwined with fitness. Some physiological systems can improve survival, like the immune system, but compete with other processes for resources. Because animals evolved with resource limitation, it is important to understand how these resource-allocation decisions are made. To meet this end, I performed four investigations addressing how life-history characteristics shift in side-blotched lizards (Uta stansburiana) using laboratory studies and multi-year field sampling. First, I measured metabolic rates in response to different immune challenges and different energy states in male lizards. I found that, surprisingly, cutaneous biopsies were associated …

Bridging Post-Wildfire Communication Gaps Between Managers, Researchers, And Local Communities, Including A Biological Soil Crust Case Study, Hilary Louise Whitcomb

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Immediately after a wildfire land managers act quickly to protect water supplies, soil stability, habitat, and forage. We don't currently understand how managers make trade-off decisions between social, political, and ecological factors in these tight timelines or if they are able to use new science. We do know ecosystems often benefit from local engagement, and new, scientifically-grounded methods that improve restoration efforts are needed. As post-wildfire timelines don’t often allow for outside input, I asked managers what they and stakeholders think about post-wildfire projects and what managers think about new science. I asked local citizens what they think about postwildfire …

The Influence Of Wind Energy Development On Columbian Sharp-Tailed Grouse (Tympanuchus Phasianellus Columbianus) Breeding Season Ecology In Eastern Idaho, Matthew C. Proett

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Columbian sharp-tailed grouse (Tympanuchus phasianellus columbianus; CSTG) has experienced range-wide population declines, primarily as a result of habitat loss or degradation, and currently occupies <10% of its historic range. Expansion of wind energy developments across the remaining occupied CSTG range has been identified as a potential threat to the species. To assess the potential influence of wind energy development of CSTG breeding season ecology, I captured and radio-marked 135 female CSTG drugin 2014-2015 at leks located between 0.1-13.8 km from wind turbines in restored grassland habitats. Using radio-telemetry, I monitored 147 nests and 68 broods and developed models to assess the influence of wind turbines, roads, habitat features temporal factors, and precipitation on CSTG nest site selection, nest survival, brood success, and chick survival. Female CSTG in my study selected nest sites in grassland habitats where >30% of the canopy cover in the nesting core use area was composed of forbs (i.e., broadleaf plants). The strength of selection for this habitat type increased as its availability increased on the landscape. Nest survival increased with higher visual obstruction readings (i.e., concealment) at the nest bowl and in grassland habitats where forb cover exceeded 30% in the nesting core use area. I did not detect an influence of wind turbines or …

Spatial And Temporal Study Of Heat Transport Of Hydrothermal Features In Norris Geyser Basin, Yellowstone National Park, Ruba A. M. Mohamed

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Monitoring thermal activity in Yellowstone National Park is required by the United States Congress to maintain the safety of the visitors and park service personnel and to protect the integrity of the park. This dissertation is part of a study initiated in the early 2000s to monitor the thermal activity in the park with focus on Norris Geyser Basin, the hottest geyser basin in the park. The study is considered the first multiple-year study in the basin which took place between August 2008 and October 2013. In this study, at least one thermal infrared image was acquired every year using …

Simple Soil Quality Tests And Organic Management Practices For Orchards In The Intermountain West, Esther Oline Thomsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Soil health is often overlooked as a long-term management strategy as growers face an increasing number of short-term management challenges in the Intermountain West. The costs of inputs are rising and water resources are becoming more limited. Soil with poor health typically requires more amendments and fertlizers to meet crop needs. Soil health tests can help reveal management practices that reduce soil health, as well as those that improve soil health. Practices known to improve soil health are reduced to no tillage, cover crop use- especially legumes, and addition of mulch and other organic materials. Soil health testing is not …

Stable Isotopes And The Ecology And Physiology Of Reptiles, Andrew M. Durso

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

When animals don’t have enough food, they have to “choose” between “spending” their limited energy on themselves or on their offspring. Biologists think that reptiles can make this choice quickly in response to different environments. But, it can be hard to study these choices because it is hard to convert between, for example, the number of eggs laid and the speed of healing a wound. By using stable isotope chemistry, we can collect more detailed and comparable information about how lizards and other animals spend their limited resources than with any other method. For example, lizards in the wild have …

Physically Based Modeling Of The Impacts Of Climate Change On Streamflow Regime, Nazmus Shams Sazib

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Understanding the implications of climate change on streamflow regime is complex as changes in climate vary over space and time. However, a better understanding of the impact of climate change is required for identifying how stream ecosystems vulnerable to these changes, and ultimately to guide the development of robust strategies for reducing risk in the face of changing climatic conditions. Here I used physically based hydrologic modeling to improve understanding of how climate change may impact streamflow regimes and advance some of the cyberinfrastructure and GIS methodologies that support physically based hydrologic modeling by: (1) using a physically based model …

Comparing Conventional And Noninvasive Monitoring Techniques For Assessing Cougar Population Size In The Southern Greater Yellowstone Ecosystem, Peter D. Alexander

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Determining the abundance or density of wildlife populations is needed for informed decision-making by wildlife biologists. Cougars (Puma concolor), however, are a highly secretive species occurring at very low densities across the landscape, and thus their populations are difficult for biologists to accurately assess. The conventional, and most trusted, method entails physically trapping and radio-collaring as many cougars as possible in a population, and then performing a simple count to determine a minimum population size. While accurate, this method is prohibitively expensive, logistically challenging, and behaviorally disruptive to the study animal. Many noninvasive surveying techniques, such as camera …

Assessing Plant Community Structure In The Upper Las Vegas Wash Conservation Transfer Area, Nevada: The Influence Of Biotic And Abiotic Variables, Amy A. Croft

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ecological communities are complex, the structure of which is composed of interactions between multiple community characteristics and the abiotic and biotic factors shaping them. Because of this complexity, ecological studies are generally limited in scope and size, often dissecting communities into their component parts to examine them piece by piece. While this might be the most practical method to study communities, this approach often neglects other characteristics that, with their inclusion, would provide a more complete picture of community ecology. The studies described in this dissertation were conducted in an effort to synthesize the complexity that is inherent in ecological …

Modeling The Ecological Consequences Of Visitor Behavior In Off-Trail Areas Of Dispersed Recreation Use, Ashley L. D'Antonio

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Parks and protected areas are often created to protect important social, ecological, or cultural resources from impairment. In the United States, a large majority of these parks and protected areas are also public land where recreational activities such as hiking or scenic driving are allowed. Managers of many parks and protected areas must therefore try to protect resources while also allowing for recreation use that may put these resources at risk for damage. The field of recreation ecology is interested in understanding how recreation use in parks and protected areas can sometimes cause ecological impacts to vegetation, soil, wildlife, water, …

Factors Contributing To The Conservation Of Phacelia Submutica (Boraginaceae), A Threatened Species In Western Colorado: Reproductive Biology And Seed Ecology, Alicia M. Langton

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Conservation and recovery plans for rare species require biological and ecological information to discern how they may be susceptible to human disturbances. Phacelia submutica is a threatened annual species in western Colorado. Human activities including energy development, recreation, and livestock grazing are occurring within the species’ range. To provide conservation practitioners with a scientific basis for management, this research aimed to elucidate elements of the species’ ecology. Chapter 2 describes the reproductive biology of P. submutica. Potential insect pollinators were not observed during two years of observations. Floral traits and development ensure self-pollination and reduce the likelihood that insects …

Relationships Between Water Developments And Select Mammals On The U.S. Army Dugway Proving Ground, Utah, Bryan M. Kluever

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Water is essential to life. Three general forms of water exist: pre-formed water that is available in food, metabolic water that is created as a byproduct of life processes (e.g., metabolism of fat or breakdown of carbohydrates), and free water (i.e., water available for drinking). As humans settle arid environments, the addition of man-made free water sources (e.g., sewage ponds, catchment ponds) often occurs. In addition, a tool commonly used to increase the abundance or distribution of wildlife species in desert environments is the addition of water sources, usually specifically designed to benefit game species like bighorn sheep (Ovis …