Digital Commons Network^™

A Phylogenetic Backbone For Bivalvia: An Rna-Seq Approach, Vanessa L. Gonzàlez, Sonia C. S. Andrade, Rudiger Bieler, Timothy M. Collins, Casey W. Dunn, Paula M. Mikkelsen, John D. Taylor, Gonzalo Giribet

All Faculty

Bivalves are an ancient and ubiquitous group of aquatic invertebrates with an estimated 10 000?20 000 living species. They are economically significant as a human food source, and ecologically important given their biomass and effects on communities. Their phylogenetic relationships have been studied for decades, and their unparalleled fossil record extends from the Cambrian to the Recent. Nevertheless, a robustly supported phylogeny of the deepest nodes, needed to fully exploit the bivalves as a model for testing macroevolutionary theories, is lacking. Here, we present the first phylogenomic approach for this important group of molluscs, including novel transcriptomic data for 31 …

Habitat Use Of The Key Largo Woodrat (Neotoma Floridana Smalli), Lauren J. Barth

FIU Electronic Theses and Dissertations

Key Largo woodrats are an endangered subspecies with an extremely limited habitat. This study sought to understand woodrat habitat preferences in order to guide management. Woodrats build stick nests from natural and artificial materials, so nest distribution and nest occupancy were used as indicators of preference. Distribution was determined by nest surveys, and remote cameras were used to assess occupancy. Forest structure, human disturbance, nest, and animal presence metrics were also collected. More nests were found along abandoned roads than along forest transects and more artificial nests were occupied than natural nests. These findings indicate that woodrats prefer areas with …

Towards A Cohesive, Holistic View Of Top Predation: A Definition, Synthesis And Perspective, Fabrizio Sergio, Oswald J. Schmitz, Charles J. Krebbs, Robert D. Holt, Michael R. Heithaus, Aaron J. Wirsing, William J. Ripple, Euan Ritchie, David Ainley, Daniel Oro, Yadvendradev Jhala, Fernando Hiraldo, Erkki Korpimäki

FCE LTER Journal Articles

The ongoing global loss of top predators and their recolonization of various regions are causing a rapid upsurge of studies on these species and a consequent fragmentation of this field into disconnected, specialized subcompartments: this will weaken efforts to produce synthetic generalisations of broader ecological interest. Here, we show that top predation provides regular contributions to general ecology, is well grounded in theoretical ecology and is a rapidly expanding and increasingly experimental, multidisciplinary and technological field of research. The novelty of this forum lies in providing a concise synthesis of this area of ecology, in attempting to formalise “top predation” …

Ecosystem Fragmentation Drives Increased Diet Variation In An Endemic Livebearing Fish Of The Bahamas, Marcio S. Araujo, R. Brian Langerhans, Sean T. Giery, Craig A. Layman

Department of Biological Sciences

One consequence of human-driven habitat degradation in general, and habitat fragmentation in particular, is loss of biodiversity. An often-underappreciated aspect of habitat fragmentation relates to changes in the ecology of species that persist in altered habitats. In Bahamian wetlands, ecosystem fragmentation causes disruption of hydrological connectivity between inland fragmented wetlands and adjacent marine areas, with the consequent loss of marine piscivores from fragmented sections. We took advantage of this environmental gradient to investigate effects of ecosystem fragmentation on patterns of resource use in the livebearing fish Gambusia hubbsi (Family Poeciliidae), using both population- and individual-level perspectives. We show that fragmentation-induced …

Differential Effects Of Lichens Versus Liverworts Epiphylls On Host Leaf Traits In The Tropical Montane Rainforest, Hainan Island, China, Ligyan Zhou, Fude Liu, Wenjie Yang, H. Liu, Hongbo Shao, Zhongsheng Wang, Sunqing An

Department of Earth and Environment

Epiphylls widely colonize vascular leaves in moist tropical forests. Understanding the effects of epiphylls on leaf traits of host plants is critical for understanding ecological function of epiphylls. A study was conducted in a rain forest to investigate leaf traits of the host plants Photinia prunifolia colonized with epiphyllous liverworts and foliicolous lichens as well as those of uncolonized leaves. Our results found that the colonization of lichens significantly decreased leaf water content (LWC), chlorophyll (Chl) a and a + b content, and Chl a/b of P. prunifolia but increased Chl b content, while that of liverworts did not affect …

Seasonal Fish Dispersal In Ephemeral Wetlands Of The Florida Everglades, Charles W. Goss, William F. Loftus, Joel C. Trexler

FCE LTER Journal Articles

We hypothesized that fishes in short-hydroperiod wetlands display pulses in activity tied to seasonal flooding and drying, with relatively low activity during intervening periods. To evaluate this hypothesis, sampling devices that funnel fish into traps (drift fences) were used to investigate fish movement across the Everglades, U.S.A. Samples were collected at six sites in the Rocky Glades, a seasonally flooded karstic habitat located on the southeastern edge of the Everglades. Four species that display distinct recovery patterns following drought in long-hydroperiod wetlands were studied: eastern mosquitofish (Gambusia holbrooki) and flagfish (Jordanella floridae) (rapid recovery); and bluefin …

A Review Of The Effects Of Altered Hydrology And Salinity On Vertebrate Fauna And Their Habitats In Northeastern Florida Bay, Jerome J. Lorenz

FCE LTER Journal Articles

Estuarine productivity is highly dependent on the freshwater sources of the estuary. In Florida Bay, Taylor Slough was historically the main source of fresh water. Beginning in about 1960, and culminating with the completion of the South Dade Conveyance System in 1984, water management practice began to change the quantity and distribution of flow from Taylor Slough into Northeastern Florida Bay. These practices altered salinity and hydrologic parameters that had measurable negative impacts on vertebrate fauna and their habitats. Here, I review those impacts from published and unpublished literature and anecdotal observations. Almost all vertebrates covered in this review have …

Environmental And Individual Factors Shaping The Habitat Use And Trophic Interactions Of Juvenile Bull Sharks (Carcharhinus Leucas) In A Subtropical Estuary, Philip Matich

FIU Electronic Theses and Dissertations

Top predators serve important roles within their respective ecosystem through top-down and bottom-up effects, yet understanding how these roles vary among individuals within predator populations is still in its early stages. Such individuality can have important implications for the functional roles predators play within their respective ecosystems. Therefore, elucidating the factors that drive persistent individual differences within populations is crucial for understanding how individuals, and in turn populations, will respond to environmental changes and anthropogenic stressors, and the implications of these responses for particular ecological functions. In this dissertation I investigated the movements, residency patterns, and trophic interactions of a …

Mechanisms Of Diatom Assembly In A Hydrologically-Managed Subtropical Wetland, Sylvia S. Lee

FIU Electronic Theses and Dissertations

Diatoms are useful indicators of ecological conditions but the mechanisms driving assemblage distribution are not clearly defined. Understanding the mechanisms underlying assemblage distribution is necessary to make accurate predictions about the effects of environmental change, such as hydrologic management, restoration, and climate change. The examination of diatom distribution and key drivers across a large wetland over several years can provide a resolved spatio-temporal framework for determining the relative importance of environmental and spatial factors influencing assemblage patterns. I examined a 6-year record of diatom distribution across the Everglades, a large hydrologically-managed subtropical wetland. Successful restoration of this ecosystem depends on …

Multi-Tissue Stable Isotope Analysis And Acoustic Telemetry Reveal Seasonal Variability In The Trophic Interactions Of Juvenile Bull Sharks In A Coastal Estuary, Philip Matich, Michael R. Heithaus

FCE LTER Journal Articles

1. Understanding how natural and anthropogenic drivers affect extant food webs is critical to predicting the impacts of climate change and habitat alterations on ecosystem dynamics.
2. In the Florida Everglades, seasonal reductions in freshwater flow and precipitation lead to annual migrations of aquatic taxa from marsh habitats to deep-water refugia in estuaries. The timing and intensity of freshwater reductions, however, will be modified by ongoing ecosystem restoration and predicted climate change.
3. Understanding the importance of seasonally pulsed resources to predators is critical to predicting the impacts of management and climate change on their populations. As with many large predators, however, it …