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An In Silico Dna Sequence Comparison Of The Perennial Ryegrass And Rice Genomes, Marty J. Faville

IGC Proceedings (1997-2023)

Comparative mapping studies in the family Poaceae, which includes rice (a model species for this family) and perennial ryegrass (PRG) have indicated macro-colinearity of genes is generally conserved across different genomes. Genome mapping of simple sequence repeat markers derived from expressed sequence tags (EST-SSRs) for PRG (Faville et al., 2004) provides a vehicle for DNA sequence-based matching of mapped PRG genes to orthologous positions in the rice genome, which can be used to establish comparative relationships between these species’ genomes. We have initiated such an analysis using an EST-SSR-based PRG genome map. Our objective was to assess this in …

Comparative Nutritional Assessment And Metabolomics Of A Wrky Rice Mutant With Enhanced Germination Rates, Santiago Bataller, Anne J. Villacastin, Qingxi J. Shen, Christine Bergman

Life Sciences Faculty Research

Rice is the primary staple food for half the world’s population. Climate change challenges and food insecurity supports the need for rice with agronomically advantageous traits. We report on a transposon insertional rice mutant with enhanced germination rates. This trait is advantageous for rice growth in limited water regions and to reduce yield constraints caused by weed and bird competition. Evaluations of vital nutritional components, compositional analysis, and comparative metabolomics on threshed grain samples are performed, as these assays are those used to assess the safety of foods from genetically modified crops. Compared with the wild type (cv. Nipponbare), oswrky71 …

Targeted Mapping Of Oryza Sativa Chilling Tolerance Candidate Genes Using Multiple Stress-Relevant Quantitative Traits, Naoki Simon Shimoyama

Dissertations (1934 -)

Developing chilling tolerant accessions of domesticated Asian rice is a potential source of significant crop improvement to address the needs of a growing global population. The uniquely chilling sensitive nature of the tropically originating Oryza sativa make it the most important staple crop that could gain the maximum benefit from improved tolerance to low temperature stress. However, mechanisms underlying this complex trait are not fully understood. Oryza sativa has two major varietal groups with different levels of chilling tolerance, JAPONICA and INDICA, providing an ideal tool to investigate mechanistic differences in the chilling stress tolerance responses within this important crop …

Biology Of Spodoptera Frugiperda (J.E. Smith) (Lepidoptera: Noctuidae) On Rice And Different Corn Varieties, Anthony S. Agravante, Karen B. Alviar, Analiza Henedina M. Ramirez, Sheryl A. Yap

The Philippine Agricultural Scientist

Rice and corn are one of the most important crops in the Philippines. Several insect pests contribute to the losses and low yield of these crops. The fall armyworm (FAW), Spodoptera frugiperda (J.E. Smith), was recently reported to cause economic damage to corn. Also, this insect consists of two genetically differentiated strains namely, the corn strain and the rice strain. This study was conducted in a laboratory conditions to evaluate the biological parameters of FAW on rice and corn varieties. Newly hatched larvae were fed such as the open pollinated variety (OPV), traditional variety, Macho F1 (hybrid), NK 6410 (genetically …

Validation Of Newly Designed Ssr Markers For Eight Rice (Oryza Sativa L.) Genotypes With Variable Heat Tolerance Responses Based On Agromorphic Data And Pollen Fertility Analysis [Research Note], Monaliza B. Magat, Norvie L. Manigbas, Jessica D. Rey

The Philippine Agricultural Scientist

Rice is one of the most valuable staple food crops in the world. However, several challenges greatly affect production, one of which is the threat imposed by heat stress. To address this, researchers are developing varieties that are heat stress tolerant with genetic markers aid. In this study, eight rice genotypes, namely Dular, Nagina 22, NSIC Rc 222, Milyang 23, EL15, EL92, EL85, and IR52 were observed for agromorphic data, which included plant height, panicle length, filled and unfilled grains, and grain yield. Flower samples were collected to determine the effect of heat stress on pollen fertility. Molecular markers were …

Evaluating Metabolic And Genomic Data For Predicting Grain Traits Under High Night Temperature Stress In Rice, Ye Bi, Rafael Massahiro Yassue, Puneet Paul, Balpreet Kaur Dhatt, Jaspreet Sandhu, Phuc Thi Do, Harkamal Walia, Toshihiro Obata, Gota Morota

Department of Agronomy and Horticulture: Faculty Publications

The asymmetric increase in average nighttime temperatures relative to increase in average daytime temperatures due to climate change is decreasing grain yield and quality in rice. Therefore, a better genome-level understanding of the impact of higher night temperature stress on the weight of individual grains is essential for future development of more resilient rice. We investigated the utility of metabolites obtained from grains to classify high night temperature (HNT) conditions of genotypes, and metabolites and single-nucleotide polymorphisms (SNPs) to predict grain length, width, and perimeter phenotypes using a rice diversity panel. We found that the metabolic profiles of rice genotypes …

2023 Champions For Justice 1-27-2023, Roger Williams University School Of Law

School of Law Conferences, Lectures & Events

No abstract provided.

Rice Biomass Response To Various Phosphorus Fertilizers In A Phosphorus-Deficient Soil Under Simulated Furrow-Irrigation, Jonathan B. Brye, Kristofor R. Brye, Diego Della Lunga

Discovery, The Student Journal of Dale Bumpers College of Agricultural, Food and Life Sciences

Wastewater-recovered phosphorus (P), in the form of the mineral struvite (MgNH4PO4∙6H2O), may provide a sustainable alternative to decreasing rock-phosphate reserves. Struvite can be generated via precipitation methods, potentially reducing the amount of P runoff to aquatic ecosystems. The objective of this greenhouse tub study was to evaluate the effects of chemically and electrochemically precipitated struvite (CPST and ECST, respectively) on aboveground plant response in a hybrid rice cultivar grown using furrow-irrigation compared to other common fertilizer-P sources [i.e., triple super phosphate (TSP) and diammonium phosphate (DAP)] using three replications of fertilizer treatment in a P-deficient silt loam (Typic Glossaqualfs). Aboveground …

Exploring The Effects Of Environmental Factors On Rice Blast Disease, April Ellen Lamb

Theses and Dissertations--Plant Pathology

Rice blast disease, caused by the ascomycete fungus Magnaporthe oryzae, occurs in over 85 countries and results in an annual crop loss of 10-30%, a corresponding nutrient value of meals for 60 million people. As a result, it is listed as a critical plant disease by the United Nations. Understanding factors affecting disease severity is of critical concern for food security. M. oryzae has been used as a model system for studying effector-triggered immunity (ETI) by understanding that ETI is primarily a plant response. M. oryzae has been used as a model to study fungal pathogenicity, host specificity, genome …

Activated Charcoal Alleviates Fluoride Stress By Restricting Fluoride Uptake And Counteracting Oxidative Damages In The Rice Cultivar Mtu1010, Ankur Singh, Swarnavo Chakraborty, Aryadeep Roychoudhury

Turkish Journal of Botany

This work was aimed to explore the efficacy of activated charcoal (5 mg g^-1 soil) in abating fluoride (25 mg L^-1 NaF) stress in rice seedlings, since the protective role of charcoal is widely reported against other forms of abiotic stress. Application of NaF solution reduced germination rate, dry and fresh weight, and shoot and root length of seedlings. Extensive fluoride accumulation lowered the chlorophyll level along with higher electrolyte leakage and formation of H2 O2 , malondialdehyde, and methylglyoxal. Administration of activated charcoal lowered the extent of oxidative damages by inhibiting the uptake of fluoride ions. Exogenous …

Alleviating Effects Of Salicylic Acid Spray On Stage-Based Growth And Antioxidative Defense System In Two Drought-Stressed Rice (Oryza Sativa L.) Cultivars, Asma ., Iqbal Hussain, Muhammad Yasin Ashraf, Muhammad Hamzah Saleem, Muhammad Arslan Ashraf, Baber Ali, Aisha Shereen, Ghulam Farid, Muhammad Ali, Muhammad Ubaidullah Shirazi, Ammara Saleem, Yasser S. Mostafa, Mohamed Hashem, Ghulam Yasin

Turkish Journal of Agriculture and Forestry

Approximately 33% of the arable land around the world is vulnerable to drought, which is a very serious issue affecting the yield and productivity of cereal crops. Two contrasting rice (Oryza sativa L.) genotypes, HTT-138 (drought tolerant) and (HTT-39 droughtsensitive), under various levels of water treatments, i.e. control flooded (CF) as recommended for rice (control), control saturated (CS) 100% field capacity (FC), 80% FC, and 60% FC without or with foliar spray (100 mg L^-1) of salicylic acid (SA) evaluated to enhance the yield for food security. The results showed that leaf gas exchange parameters, water use …

Expanding The Use Of High-Performance Liquid Chromatography For Varietal Identification Or Verification Of Selected Cereal Crops, Johnna Jorgensen

Electronic Theses and Dissertations

High-performance liquid chromatography (HPLC) is a form of analytical chemistry where adsorption is a key factor in which the purpose is to separate, identify and quantify each component in a mixture. It is the optimal separation technique of chemical and biological compounds that are non-volatile including proteins and natural products (i.e., plant extracts). As each sample component interacts differently with the absorbent material within the column, the flow rates change leading to the separation of peaks, which are plotted via computer software. Most commonly HPLC analysis has been used for chemical manufacturing and pharmaceutical purposes. When using HPLC for crop …

Evaluation Of Biological And Chemical Seed Treatments For Management Of Rice Diseases, Sherif Adam Sharfadine

Graduate Theses and Dissertations

Rice is the primary staple for more than half of the global population and is the second most important cereal worldwide. In the US, rice is primarily grown in the southern states, with Arkansas leading production and responsible for 47% of the total rice production in the country. Diseases cause significant yield losses in rice. Sheath blight, rice blast and bacterial panicle blight are the main diseases in rice and cause significant yield losses. Sheath blight alone could cause up 50% yield loss in heavily damaged fields with highly susceptible cultivars. Additionally, rice seed and seedling diseases primarily caused by …

Diagnosing Excess Nitrogen In Rice Using Post-Season Tissue Samples, Kyle Hoegenauer

Graduate Theses and Dissertations

Proper nitrogen (N) management in rice production can be difficult to achieve without the aid of tools such as soil and tissue tests. There are no tests currently available to rice producers that determine whether N has been managed properly throughout the season or that detect instances of over fertilization. Rice stalk samples were collected from N response trials within 3 days of harvest from the primary Arkansas rice growing region in 2016-2018. Stalk samples were analyzed for N concentration through a KCl extraction and spectrofluorometric quantification. Samples analyzed with leaf material intact contained statistically different N concentrations than samples …

Nitrogen Management In Rice Under Suboptimal Soil Conditions, Payton Suzanne Rhea

Graduate Theses and Dissertations

In Mid-South rice (Oryza sativa, L.) production, nitrogen (N) fertilizer management for pureline varieties is most often recommended as a single preflood (SPF) or two-way split (2WS) application in a direct-seeded, delayed-flood system. Most of the N fertilizer is typically applied at the four- to six-leaf stage onto dry soil, and the second application, if necessary, into the floodwater during early reproductive growth stages (referred to as midseason). Environmental factors frequently prohibit growers from applying early N fertilizer under optimal dry soil conditions. A study was conducted to determine the best N fertilization management practices to utilize in rice when …

A Non-Destructive Approach For Measuring Rice Panicle-Level Photosynthetic Responses Using 3d-Image Reconstruction, Jaspinder Singh Dharni, Balpreet Kaur Dhatt, Puneet Paul, Tian Gao, Tala Awada, Harel Bacher4, Zvi Peleg, Paul E. Staswick, Jason Hupp, Hongfeng Yu, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Background: Our understanding of the physiological responses of rice inflorescence (panicle) to environmental stresses is limited by the challenge of accurately determining panicle photosynthetic parameters and their impact on grain yield. This is primarily due to the lack of a suitable gas exchange methodology for panicles and non-destructive methods to accurately determine panicle surface area.

Results: To address these challenges, we have developed a custom panicle gas exchange cylinder compatible with the LiCor 6800 Infra-red Gas Analyzer. Accurate surface area measurements were determined using 3D panicle imaging to normalize the panicle-level photosynthetic measurements. We observed differential responses in …

Role Of Plasma Membrane Intrinsic Proteins (Pips) Subfamily And Sulfur Nanoparticle Interactions In Metalloids Transport And Tolerance/Sensitivity In Rice, Ahmed Gm Ali

Doctoral Dissertations

Plasma membrane intrinsic proteins (PIPs) are major intrinsic proteins (MIPs) with the ability to permeate water and small uncharged solutes as well as metalloids including arsenic (As), through the cell membranes. Arsenic is a highly toxic element that occurs naturally in the earth's crust or from anthropogenic activities with a severe poisonous effect on most living organisms. Rice, as the daily staple food for more than half of the world population, accumulates higher As contents than any other economic crop due to its growing conditions in flooded paddy fields. Members from the NOD26-like intrinsic proteins (NIP) subfamily of MIP were …

Rice Chalky Grain 5 Regulates Natural Variation For Grain Quality Under Heat Stress, Anil Kumar Nalini Chandran, Jaspreet Sandhu, Larissa Irvin, Puneet Paul, Balpreet K. Dhatt, Waseem Hussain, Tian Gao, Paul E. Staswick, Hongfeng Yu, Gota Morota, Harkamal Walia

Department of Agronomy and Horticulture: Faculty Publications

Heat stress occurring during rice (Oryza sativa) grain development reduces grain quality, which often manifests as increased grain chalkiness. Although the impact of heat stress on grain yield is well-studied, the genetic basis of rice grain quality under heat stress is less explored as quantifying grain quality is less tractable than grain yield. To address this, we used an image-based colorimetric assay (Red, R; and Green, G) for genome-wide association analysis to identify genetic loci underlying the phenotypic variation in rice grains exposed to heat stress. We found the R to G pixel ratio (RG) derived from mature …

B.R. Wells Arkansas Rice Research Studies 2021, J. Hardke, X. Sha, N. Bateman

Arkansas Agricultural Experiment Station Research Series

Arkansas is the leading rice producer in the United States. The state represents 47.5% of total U.S. rice production and 47.8% of the total acres planted to rice in 2021. Rice cultural practices vary across the state and across the U.S. However, these practices are also dynamic and continue to evolve in response to changing political, environmental, and economic times. This survey was initiated in 2002 to monitor and record changes in the way Arkansas rice producers approach their livelihood. The survey was conducted by polling county extension agents in each of the counties in Arkansas that produce rice. Questions …

The Effect Of Water Management And Ratoon Rice Cropping On Methane Emissions And Harvest Yield In Arkansas, Marguerita Leavitt

Graduate Theses and Dissertations

Sustainable intensification of rice farming is crucial to meeting human food needs while reducing environmental impacts. Rice produces 8% of all anthropogenic CH4, which is a potent greenhouse gas. CH4 emissions can potentially be reduced by cultivation practices that minimize the number of days the fields are saturated, such as dry-seeding instead of water-seeding and irrigation using the alternate wetting and drying (AWD) technique instead of delayed, continuous flooding (DF). Ratoon cropping, wherein a second crop of rice is grown from the harvested stubble of the first crop, can be used to produce additional yield with minimal labor, but may …

Mineral Element Discrimination Of Selenium-Enriched Rice In Ningxia And Its Quality Evaluation, Yang Xiao-Chen

Food and Machinery

Objective:The element content and physical and chemical quality were analyzed from the nutritional quality of Selenium (Se)-enriched rice in Ningxia.Methods:25 rice samples from different brands in Ningxia were selected as the research object, and 26 mineral elements in which were determined by inductively coupled plasma mass spectrometry (ICP-MS), and multivariate statistical analysis of these elements was conducted.Results:Through the analysis of the difference of element content between Se-enriched rice and ordinary rice, the quality of Se-enriched rice was distinguished. Moreover, it was found that Se-enriched rice was rich in four kinds of elements such as Ca, …

Quality Properties Of Mixture Of The Proso Millet And Rice, Ren Jing, Jiang Wen-Qian, Zhao Ning, Ji Xiao-Hui, Li Meng-Qing, Du Shuang-Kui

Food and Machinery

Objective:The purpose of this study was to mix rice and proso millets and obtain high nutritional value, fantastic taste and flavor mixed rice.Methods:By adding different proportions of proso millets to rice, the nutritional value and fantastic taste of mixed rice were evaluated via the amino acid score (AAS), texture profile properties, sensory evaluations and flavor properties.Results:There were significant differences in the texture profile properties, sensory evaluations and flavor properties among cooked proso millets additions. The proportion of the cooked rice addition was significantly positively correlated to the gumminess and chewiness of rice, while it was …

Genetic Dissection And Qtl Pyramiding To Enhance Salinity Tolerance In Rice (Oryza Sativa L.), Sandeep Chapagain

LSU Doctoral Dissertations

Salinity is emerging as a major threat to rice production worldwide due to climate change and anthropogenic sources. We performed three different population development approaches using exotic salt tolerant donors in US rice backgrounds to identify the salt tolerant QTLs/genes and tolerant breeding lines. First approach involved development of a biparental introgression lines (ILs) population by utilizing a salinity tolerant donor ‘TCCP’ in an elite rice cultivar ‘Cheniere’ background and mapping of QTLs at germination, seedling, and reproductive stages A total of seven QTLs for five germination traits, 16 QTLs for seven seedling stage traits, and 30 QTLs for ten …

Research On Rapid Prediction Model Of Rice Moisture Content Based On Near Infrared Spectroscopy, Lu Du, Tang Jian-Bo, Jiang Tai-Ling, Chen Zhong-Ai, Pan Mu

Food and Machinery

Objective:In order to established a non-destructive, rapid and efficient method for detecting the moisture content of rice. Methods:This study, 161 rice samples were collected from 5 different regions were studied by near infrared spectroscopy combined with stoichiometry. By eliminating abnormal spectra and preprocessing the spectra, the prediction model of rice moisture content was established by partial least squares regression. Results:15 abnormal spectrum samples were eliminated using the method of principal component analysis combined with mahalanobis distance. The best spectral pretreatment was to eliminate the constant offset. The prediction model R2CAL established in the training set was 0.994 …

International Rice Outlook: International Rice Baseline Projections 2021–2031, A. Durand-Morat, S. Bairagi

Research Reports and Research Bulletins

The war in Ukraine and the lingering effects of the COVID-19 pandemic are pushing input costs to record levels. Although rice prices have increased some in the last several months, production costs have increased more than proportionally, undermining rice profitability.

We project global rice production will surpass global rice consumption for most of the coming decade, with a small deficit developing by the end of the projected period.

The projected growth in production is almost exclusively due to productivity gains since the global rice area is projected to increase only marginally by 2029–2031.

The projected growth in global rice consumption …

Champions For Justice 8th Annual, May 6, 2022, Roger Williams University School Of Law

School of Law Conferences, Lectures & Events

No abstract provided.

Evaluation Of Benzobicyclon In Midsouth Rice (Oryza Sativa) Production Systems, Jake Patterson

Graduate Theses and Dissertations

Controlling weedy rice postemergence is challenging for rice producers in the United States because of the lack of herbicide options. Weedy rice is genetically similar to cultivated rice, thus making it difficult to control with mid-season postemergence herbicide applications without also damaging the crop. Hence, there is a need for a new effective postemergence weedy rice control herbicide. Findings from this research indicate that the use of benzobicyclon in current standard quizalofop- and imidazolinone-resistant rice herbicide programs provides tremendous utility for Midsouth rice producers. In both of these production systems, the addition of benzobicyclon to the respective standard herbicide programs …

Impact Of New Technologies On Weed Control In Louisiana Rice Production, David C. Walker

LSU Doctoral Dissertations

Field studies were conducted in 2018-2021 at the LSU Agricultural Center’s H.R. Caffey Rice Research Station (RRS) near Crowley, LA, and the Dean Lee Research and Extension Center (DLREC) near Alexandria, LA to evaluate off-target florpyrauxifen movement on soybean. Soybean was treated with florpyrauxifen at the V4-V5 or R1-R2 growth stages. Soybean injury was evaluated at 1, 7, 14, and 28 days after treatment (DAT) and soybean plant height (cm) was recorded at 7, 14, and 28 DAT. At soybean maturity, yield and individual yield components were subjected to regression analysis to describe the relationship between florpyrauxifen rate and soybean …

The Rice Theory Of Culture, Thomas Talhelm

Online Readings in Psychology and Culture

The rice theory of culture is the idea that rice farming societies developed into more interdependent, tight cultures in response to the demands of the plant. Farming in general is an interdependent subsistence style, but traditional paddy rice farming was starkly different from other major crops like wheat, corn, and potatoes. Paddy rice required twice as much labor per hectare as wheat farming. Farmers responded by creating customs to share labor. Paddy rice also depended on irrigation systems to flood and drain the fields. Once farmers controlled water, they now had to coordinate how much water each farmer got, when …

The Three-Way Interplay Among Early Life Exposures, The Gut Microbiome, And Outcomes In Infancy, Yuka Moroishi

Dartmouth College Ph.D Dissertations

The bidirectional relationship between the gut microbiome and immune system plays an important role in host immune status: the immune system provides the gut microbiome the optimal environment to thrive in, and the gut microbiome helps regulate the immune system. This relationship is especially important in infants, whose immune system is still premature and rely on innate immunity.

We investigated the three-way interplay among early-life exposures, the developing gut microbiome, and outcomes in infancy from the general population in New Hampshire, US. We used prospective cohort data from the New Hampshire Birth Cohort study to 1) determine whether timing of …