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A Core Microbiome Associated With The Peritoneal Tumors Of Pseudomyxoma Peritonei, Jeremy J. Gilreath, Cristina Semino-Mora, Christopher J. Friedline, Hui Liu, Kip L. Bodi, Thomas J. Mcavoy, Jennifer Francis, Carol Nieroda, Armando Sardi, Andre Dubois, David W. Lazinski, Andrew Camilli, Traci L. Testerman, D Scott Merrell

Study of Biological Complexity Publications

Background

Pseudomyxoma peritonei (PMP) is a malignancy characterized by dissemination of mucus-secreting cells throughout the peritoneum. This disease is associated with significant morbidity and mortality and despite effective treatment options for early-stage disease, patients with PMP often relapse. Thus, there is a need for additional treatment options to reduce relapse rate and increase long-term survival. A previous study identified the presence of both typed and non-culturable bacteria associated with PMP tissue and determined that increased bacterial density was associated with more severe disease. These findings highlighted the possible role for bacteria in PMP disease.

Methods

To more clearly define the …

Endosymbiosis In Trypanosomatids: The Genomic Cooperation Between Bacterium And Host In The Synthesis Of Essential Amino Acids Is Heavily Influenced By Multiple Horizontal Gene Transfers, João M.P. Alves, Cecilia C. Klein, Flávia Maia Da Silva, André G. Costa-Martins, Myrna G. Serrano, Gregory A. Buck, Ana Tereza R. Vasconcelos, Marie-France Sagot, Marta M.G. Teixeira, Maria Cristina M. Motta, Erney P. Camargo

Study of Biological Complexity Publications

Background

Trypanosomatids of the genera Angomonas and Strigomonas live in a mutualistic association characterized by extensive metabolic cooperation with obligate endosymbiotic Betaproteobacteria. However, the role played by the symbiont has been more guessed by indirect means than evidenced. Symbiont-harboring trypanosomatids, in contrast to their counterparts lacking symbionts, exhibit lower nutritional requirements and are autotrophic for essential amino acids. To evidence the symbiont’s contributions to this autotrophy, entire genomes of symbionts and trypanosomatids with and without symbionts were sequenced here.

Results

Analyses of the essential amino acid pathways revealed that most biosynthetic routes are in the symbiont genome. By contrast, the …

The E. Coli Effector Protein Nlef Is A Caspase Inhibitor, Sonja Blasche, Mario Mortl, Holger Steuber, Gabriella Siszler, Shahista Nisa, Frank Schwarz, Inna Lavrik, Thomas M. A. Gronewold, Klaus Maskos, Michael S. Donnenberg, Dirk Ullmann, Peter Uetz, Manfred Kogl

Study of Biological Complexity Publications

Enterohemorrhagic and enteropathogenic E. coli (EHEC and EPEC) can cause severe and potentially life-threatening infections. Their pathogenicity is mediated by at least 40 effector proteins which they inject into their host cells by a type-III secretion system leading to the subversion of several cellular pathways. However, the molecular function of several effectors remains unknown, even though they contribute to virulence. Here we show that one of them, NleF, binds to caspase-4, -8, and -9 in yeast two-hybrid, LUMIER, and direct interaction assays. NleF inhibits the catalytic activity of the caspases in vitro and in cell lysate and prevents apoptosis in …

Global Taxonomic Diversity Of Living Reptiles, Daniel Pincheira-Donoso, Aaron M. Bauer, Shai Meiri, Peter Uetz

Study of Biological Complexity Publications

Reptiles are one of the most ecologically and evolutionarily remarkable groups of living organisms, having successfully colonized most of the planet, including the oceans and some of the harshest and more environmentally unstable ecosystems on earth. Here, based on a complete dataset of all the world’s diversity of living reptiles, we analyse lineage taxonomic richness both within and among clades, at different levels of the phylogenetic hierarchy. We also analyse the historical tendencies in the descriptions of new reptile species from Linnaeus to March 2012. Although (non-avian) reptiles are the second most species-rich group of amniotes after birds, most of …

Biosynthesis Of Vitamins And Cofactors In Bacterium-Harbouring Trypanosomatids Depends On The Symbiotic Association As Revealed By Genomic Analyses, Cecilia C. Klein, Joao M. P. Alves, Myrna G. Serrano, Gregory A. Buck, Ana T. R. Vasconcelos, Marie-France Sagot, Marta M. G. Teixeira, Emey P. Camargo, Maria C. M. Motta

Study of Biological Complexity Publications

Some non-pathogenic trypanosomatids maintain a mutualistic relationship with a betaproteobacterium of the Alcaligenaceae family. Intensive nutritional exchanges have been reported between the two partners, indicating that these protozoa are excellent biological models to study metabolic co-evolution. We previously sequenced and herein investigate the entire genomes of five trypanosomatids which harbor a symbiotic bacterium (SHTs for Symbiont-Haboring Trypanosomatids) and the respective bacteria (TPEs for Trypanosomatid Proteobacterial Endosymbiont), as well as two trypanosomatids without symbionts (RTs for Regular Trypanosomatids), for the presence of genes of the classical pathways for vitamin biosynthesis. Our data show that genes …

Natural Plasmodium Infection In Monkeys In The State Of Rondônia (Brazilian Western Amazon), Maisa S. Araújo, Mariluce R. Messias, Marivaldo R . Figueiró, Luiz Herman S. Gil, Christian M. Probst, Newton M. Vidal, Tony H. Katsuragawa, Luiz H. Pereira Da Silva, Luiz S. Ozaki

Study of Biological Complexity Publications

Background

Simian malaria is still an open question concerning the species of Plasmodium parasites and species of New World monkeys susceptible to the parasites. In addition, the lingering question as to whether these animals are reservoirs for human malaria might become important especially in a scenario of eradication of the disease. To aid in the answers to these questions, monkeys were surveyed for malaria parasite natural infection in the Amazonian state of Rondônia, Brazil, a state with intense environmental alterations due to human activities, which facilitated sampling of the animals.

Methods

Parasites were detected and identified in DNA from blood …

Predicting Dyspnea Inducers By Molecular Topology, María Gálvez-Llompart,, Jorge Gálvez, Ramón García-Domenech, Lemont B. Kier

Study of Biological Complexity Publications

QSAR based on molecular topology (MT) is an excellent methodology used in predicting physicochemical and biological properties of compounds. This approach is applied here for the development of a mathematical model capable to recognize drugs showing dyspnea as a side effect. Using linear discriminant analysis, it was found a four-variable regression equations enabling a predictive rate of about 81% and 73% in the training and test sets of compounds, respectively. These results demonstrate that QSAR-MT is an efficient tool to predict the appearance of dyspnea associated with drug consumption.

Whole Brain And Brain Regional Coexpression Network Interactions Associated With Predisposition To Alcohol Consumption, Lauren A. Vanderlinden, Laura M. Saba, Katerina Kechris, Michael F. Miles, Paula L. Hoffman, Boris Tabakoff

Study of Biological Complexity Publications

To identify brain transcriptional networks that may predispose an animal to consume alcohol, we used weighted gene coexpression network analysis (WGCNA). Candidate coexpression modules are those with an eigengene expression level that correlates significantly with the level of alcohol consumption across a panel of BXD recombinant inbred mouse strains, and that share a genomic region that regulates the module transcript expression levels (mQTL) with a genomic region that regulates alcohol consumption (bQTL). To address a controversy regarding utility of gene expression profiles from whole brain, vs specific brain regions, as indicators of the relationship of gene expression to phenotype, we …