Digital Commons Network^™

Quantifying The Adaptive Cycle, David G. Angeler, Craig R. Allen, Ahjond S. Garmestani, Lance H. Gunderson, Olle Hjerne, Monika Winder

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

The adaptive cycle was proposed as a conceptual model to portray patterns of change in complex systems. Despite the model having potential for elucidating change across systems, it has been used mainly as a metaphor, describing system dynamics qualitatively. We use a quantitative approach for testing premises (reorganisation, conservatism, adaptation) in the adaptive cycle, using Baltic Sea phytoplankton communities as an example of such complex system dynamics. Phytoplankton organizes in recurring spring and summer blooms, a well-established paradigm in planktology and succession theory, with characteristic temporal trajectories during blooms that may be consistent with adaptive cycle phases. We used long-term …

The Effect Of Insularity On The Seasonal Population Structure Of Mesobuthus Gibbosus (Scorpiones: Buthidae), Dimitris Kaltsas, Iasmi Stathi, Moysis Mylonas

Euscorpius

We compared the population structure of Mesobuthus gibbosus from autumn to mid-summer at two similar phryganic ecosystems, one in continental Greece (Thessalia, near Volos city) and one in insular Greece (eastern Crete). Data were collected monthly using the capture-recapture method. At both sites, density was low during the cold period and increased towards summer. During the samplings, only a small percentage of each population was present. Population density and co-occurrence of scorpions with scorpions or other animals was higher in Crete than in Volos, probably due to the higher inter- and intraspecific competition in Volos. The population structure of the …

Divergent Responses Of Cryptic Invasive Watermilfoil To Treatment With Auxinic Herbicides In A Large Michigan Lake, Syndell R. Parks

Masters Theses

Invasive plants are a major concern for environmental managers. Cryptic invasive taxa present additional challenges because of their potential to respond differently to management efforts. Invasive Eurasian watermilfoil (Myriophyllum spicatum) and hybrid watermilfoil (Myriophyllum spicatum x Myriophyllum sibiricum) cannot be reliably distinguished based on morphological characters and are therefore cryptic taxa. Laboratory studies show that on average, hybrid watermilfoil grows faster, branches more, and is less responsive to standard control measures developed for Eurasian watermilfoil. These laboratory results predict less effective control of hybrid watermilfoil in mixed populations treated uniformly with one of these control measures. However, to date there …

The Evolutionary Selective Pressures Exerted On A3 Actinobacteriophages, Cheyenne Weeks-Galindo

Masters Theses, 2010-2019

This study identified evolutionary selective pressures within subcluster A3 actinobacteriophages. These phages are able to infect the clinically important genus Mycobacterium. Understanding the selective pressures on genes in these phage genomes is a step toward understanding the adaptations that result from short-term and long-term associations of phages and bacteria that have been co-evolving for perhaps billions of years. In this study 149 phamilies (phage protein families) of homologous gene sequences were analyzed using Datamonkey. Complete data were obtained for 57 phamilies. Of these, eleven phamilies were affected by recombination, three showed evidence of predominantly diversifying selection, and twenty-four have …

Prioritizing The Management Of Arundo Donax: Recommendations For Removal And Revegetation In California Riparian Habitats, Matthew S. Waterworth

Master's Projects and Capstones

The highly invasive grass species, giant reed (Arundo donax), has been a major contributor to riparian habitat degradation in California for over 50 years. Several modes of vegetative reproduction have allowed this alien species to take advantage of fluvial processes and rapidly spread within California watersheds. A. donax dramatically alters hydrologic regimes, displaces native vegetation, and removes food and habitat for native wildlife. It is widely accepted that removal of this invasive on a watershed scale is critical to restore natural riparian processes and facilitate the reestablishment of native flora and fauna. The following study analyzed the efficacy of …

Population Density Of The Florida Scrub Lizard (Sceloporus Woodi) In Managed Sand Pine Scrub And Longleaf Pine Sandhill Habitats, Matthew D. Kaunert, Lance D. Mcbrayer

Department of Biology Faculty Publications

Studies investigating managed landscapes are of increasing importance, as fragmentation is a known cause of biodiversity loss. From June to September 2012, we sampled populations of the rare, endemic Florida Scrub Lizard (Sceloporus woodi) across the Ocala National Forest (ONF) to compare lizard density across two managed habitat types. Florida Scrub habitat in the ONF is clearcut and roller-chopped, whereas Longleaf Pine habitat is managed via prescribed burning. We sampled 10 stands of Florida Scrub (2–3 y post disturbance) and 10 stands of Longleaf Pine (1 y post-disturbance) for lizards. We compared lizard density between the interior of …

Oxidative Stress In Avian Embyros, Toshi Tsunekage

Dissertations

Oxidative stress has been implicated in mediating trade-offs in the evolution of life histories. Oxidative stress results from an imbalance in the production of free radicals and an organism’s antioxidant defenses. Higher metabolic rates associated with more rapid growth and shorter development periods may increase oxidative stress and accumulated cellular damage in embryonic tissues. In my dissertation I explored oxidative stress and antioxidant defenses in avian embryos. I measured levels of oxidative stress in tissues of different stage embryos of Japanese quail (Coturnix japonica), and tested if patterns of lipid peroxidation could be explained by changes in the developing embryo’s …

Connectivity Of Coastal And Oceanic Ecosystems: Pelagic Habitat Use By Juvenile Reef Fishes In The Gulf Of Mexico, Katie Bowen

HCNSO Student Theses and Dissertations

The assemblage structure, abundance, biomass, and vertical distribution of juvenile reef fishes in the offshore pelagic habitat of the northern Gulf of Mexico are described as part of the NOAA-supported Offshore Nekton Sampling and Analysis Program. The results presented here are from a 3-month, continuous sampling series in 2011 in which discrete depth strata from 0 to 1500 m were sampled using a 10-m² MOCNESS midwater trawl. This is the first study to examine pelagic juvenile reef fish distributions across the entire oceanic northern Gulf of Mexico seaward of the continental shelf break after the Deepwater Horizon Oil Spill. …

Bacterial Diversity And Function Within An Epigenic Cave System And Implications For Other Limestone Cave Systems, Kathleen Merritt Brannen-Donnelly

Doctoral Dissertations

There are approximately 48,000 known cave systems in the United States of America, with caves formed in carbonate karst terrains being the most common. Epigenic systems develop from the downward flow of meteoric water through carbonate bedrock and the solutional enlargement of interconnected subsurface conduits. Despite carbonate karst aquifers being globally extensive and important drinking water sources, microbial diversity and function are poorly understood compared to other Earth environments. After several decades of research, studies have shown that microorganisms in caves affect water quality, rates of carbonate dissolution and precipitation, and ecosystem nutrition through organic matter cycling. However, limited prior …

Influence Of Habitat And Intrinsic Characteristics On Survival Of Neonatal Pronghorn, Christopher N. Jacques, Jonathan A. Jenks, Troy W. Grovenburg, Robert Wayne Klaver

Natural Resource Management Faculty Publications

Increased understanding of the influence of habitat (e.g., composition, patch size) and intrinsic (e.g., age, birth mass) factors on survival of neonatal pronghorn (Antilocapra americana) is a prerequisite to successful management programs, particularly as they relate to population dynamics and the role of population models in adaptive species management. Nevertheless, few studies have presented empirical data quantifying the influence of habitat variables on survival of neonatal pronghorn. During 2002–2005, we captured and radiocollared 116 neonates across two sites in western South Dakota. We documented 31 deaths during our study, of which coyote (Canis latrans) predation (n = 15) was the …

Lead Exposure In Children Through Water And Soil, Sravya Maru

Environmental Management & Risk Assessment (PH 560)

Lead is a metal which has the ability to spread in the earth’s crust and has corrosive property. It is a naturally occurring metal which is soft in nature. Lead exposure in children is through various pathways and the major concentrated sources are the soil and drinking water. Children are most susceptible to lead exposure is due to their growing/developing bodies which are very sensitive to lead. Lead poisoning in children is a preventable environmental disease affecting many children around the world. This paper discusses how soil and water plays a major role in lead exposure to children’s routine life. …

A New Adaptive Landscape: Urbanization As A Strong Evolutionary Force, Lauren Christie Breza

Masters Theses

Urbanization is rapidly increasing as human population growth steadily grows, but there is little consensus of the ecological consequence of this population shift and almost no information of the evolutionary consequences for local biodiversity. Nearly two-thirds of the world’s population will live in city centers by 2050 with profound impacts on landscapes that can act as important agents of selection. This study aims to identify 1) the net effect of urbanization on species richness, 2) how phylogenetic diversity varies between urban and rural sites, and 3) the strength of urbanization as a selection pressure. First, a meta-analysis was conducted in …

Sampling Terrestrial Arthropod Biodiversity: A Case Study In Arkansas, Michael Joseph Skvarla

Graduate Theses and Dissertations

The Interior Highlands is a biodiversity hotspot, with at least 200 known endemic species, but is understudied compared to hotspots, such as the Southern Appalachians. In order to begin to rectify this issue, a nine month study was conducted from mid-March through early December at a 4 ha site at Steel Creek, Buffalo National River, in Newton County, Arkansas. Thirteen collecting methods were employed, including three colors of Lindgren funnel trap, five colors of pan trap, Malaise traps, canopy traps with upper and lower collectors, pitfall traps, and Berlese-Tullgren extraction of leaf litter, which resulted in the collection of 1311 …

Prevalence Of Tick-Borne Pathogens In Small Mammals And White-Tailed Deer In Southeast Nebraska, Tim Hotaling

School of Veterinary and Biomedical Sciences: Dissertations, Theses, and Student Research

The prevalence of tick-borne diseases has been increasing in the United States for the past couple decades. Studies have been conducted throughout the US identifying tick-borne disease pathogens as well as their hosts and prevalence. Research was conducted in Nebraska to determine the presence of some tick-borne disease pathogens, their vectors, and their hosts, with emphasis made on Borrelia spp., Rickettsia rickettsii, and Ehrlichia chaffeensis.

Small rodents in southeast Nebraska were trapped and sampled at eight study sites using live capture traps. Captured rodents were assessed for active parasitism by ticks which were collected and placed in alcohol. …

Effects Of Short-Term Soil Conditioning By Cheatgrass And Western Wheatgrass, James J. O'Connor, Janet S. Prevey

The Prairie Naturalist

The exotic grass Bromus tectorum (cheatgrass) is a ubiquitous invader in the western USA. Cheatgrass is a proficient competitor, frequently displacing native plants, forming monotypic stands and reducing biodiversity in ecosystems it invades. Our experiment tested whether short-term soil modification by cheatgrass and a predominant native grass, Pascopyrum smithii (western wheatgrass), affected subsequent growth of both species. We compared productivity of cheatgrass and western wheatgrass by harvesting aboveground biomass of plants grown in either cheatgrass- or western wheatgrass-conditioned soils over two simulated growing seasons. Results indicated that cheatgrass soils do not inhibit the productivity of the native grass, but do …

Contribution Of Lianas To Plant Area Index And Canopy Structure In A Panamanian Forest, Maria Elizabeth Rodriguez-Ronderos

Theses and Dissertations

Lianas are an important component of tropical forests, where they reduce tree growth, fecundity and survival. Competition for light among plants may be intense; however the amount of light that lianas intercept is poorly understood. We used a large-scale liana removal experiment to quantify light interception by lianas in a Panamanian secondary forest. We measured the change in plant area index (PAI) and forest structure six weeks after cutting lianas in eight 80x80 m plots and in eight control plots, and then annually for four years. We used ground-based LiDAR to measure the 3-dimensional canopy structure before cutting lianas and …

Remembering Paul B. Kannowski, Robert Seabloom

The Prairie Naturalist

I am saddened to report that Dr. Paul Kannowski passed away 3 September 2015, succumbing to cancer. He was 88. A native of Grand Forks, Paul attended the University of North Dakota for his B.S. and M.S. degrees, and the University of Michigan for his Ph.D. He joined the University of North Dakota Biology Department in 1957, retiring in 1990 after 33 years of service

Paul chaired UND’s Biology Department twice, totaling 13 years, considered to be a remarkable achievement by many of us who have been exposed to that task! His leadership was instrumental in the nearly exponential growth …

Survey And Population Studies On Insects By Using Pitfall And Sticky Traps At Ibex Reserve National Park, Hutet Beni Tamim, Saudi Arabia, Ali Elgharabawy

Al-Azhar Bulletin of Science

A survey together with studies on the population densities and relative abundance of insects and species richenes at Ibex Reserve National Park, Western Hutet Beni Tamim, 180 Km. S. Riyadh in two areas (Protected area and non protected area) during one whole year from May, 2007 to the end of April, 2008, using pitfall and sticky traps.The survey revealed the presence of fifty three species belonging to thirty six genera, of fifteen families under six orders (Coleoptera, Diptera, Hemiptera, Hymenoptera, Mantodea and Orthoptera). A total number of 1033 insects was obtained throughout the year. The largest numbers were observed during …

Linking Energetics And Overwintering In Temperate Insects., Brent J Sinclair

Biology Publications

Overwintering insects cannot feed, and energy they take into winter must therefore fuel energy demands during autumn, overwintering, warm periods prior to resumption of development in spring, and subsequent activity. Insects primarily consume lipids during winter, but may also use carbohydrate and proteins as fuel. Because they are ectotherms, the metabolic rate of insects is temperature-dependent, and the curvilinear nature of the metabolic rate-temperature relationship means that warm temperatures are disproportionately important to overwinter energy use. This energy use may be reduced physiologically, by reducing the slope or elevation of the metabolic rate-temperature relationship, or because of threshold changes, such …

Phylogenetic Analysis And Revision Of The Nearctic Androprosopa Mik (Diptera: Thaumaleidae) With An Emphasis On The Western Species, Robert John Pivar

Masters Theses

The family Thaumaleidae, also known as seepage midges, is an uncommonly encountered, understudied family of aquatic Diptera compared to its sister group, the Simuliidae. The goal of this project was to assess species diversity of the Nearctic Thaumaleidae and determine relationships among them. The western Nearctic fauna of Androprosopa Mik is revised to include twenty-eight species, six of which are described as new to science. Descriptions of the adult males of A. apache, A. arnaudi, A. magnipelvim, A. rainierensis, A. sierra and A. uvas are provided. Redescriptions of all remaining species are also provided, as well …

Individual-Level Variation And Higher-Level Interpretations Of Space Use In Wide-Ranging Species: An Albatross Case Study Of Sampling Effects, Sarah Gutowsky, Marty Leonard, Melinda Conners, Scott A. Shaffer, Ian Jonsen

Faculty Publications, Biological Sciences

Marine ecologists and managers need to know the spatial extent of at-sea areas most frequented by the groups of wildlife they study or manage. Defining group-specific ranges and distributions (i.e., space use at the level of species, population, age-class, etc.) can help to identify the source or severity of common or distinct threats among different at-risk groups. In biologging studies, this is accomplished by estimating the space use of a group based on a sample of tracked individuals. A major assumption of these studies is consistency in individual movements among members of a group. The implications of scaling up individual-level …

The Role Of Endothelin 3 In Melanoma Progression And Metastasis, Nikeisha L. Chin

FIU Electronic Theses and Dissertations

Endothelin receptor b (Ednrb) and its ligand Endothelin 3 (Edn3) have been implicated in melanoma. Several studies have shown an upregulation of EDNRB and EDN3 at both the protein and mRNA levels, as melanoma becomes more aggressive. This study investigated the putative role played by Edn3 over-expression in melanoma progression and angiogenesis in vivo. We crossed Tg(Grm1)Epv transgenic mice that aberrantly express metabotropic glutamate receptor1 under the Dopachrome tautomerase promoter, leading to spontaneous melanocytic lesions in the ears and tails that do not metastasize, with transgenics that overexpress Edn3 under the Keratin 5 promoter ( …

Population Genetics And Epigenetics Of Two Salt Marsh Plant Species Along An Environmental Gradient, Christy M. Foust

USF Tampa Graduate Theses and Dissertations

Phenotypic plasticity is the ability of a given genotype to exhibit different phenotypes in response to environmental variables, which can impact population level processes. Plasticity of ecologically-relevant traits is important to an organism’s environmental response; however, the underlying mechanisms of plasticity are largely unknown. Ecological epigenetics may offer mechanisms (e.g. DNA methylation) underlying phenotypic plasticity. Epigenetics can be defined as the underlying molecular mechanisms that allow one genotype to exhibit different phenotypes. Differential DNA methylation is one epigenetic mechanism that has been correlated with a number of ecologically-relevant traits; including, differential herbivory in Viola cazorlensis, spinescence in Ilex aquifolium …

Lingnan Gardeners Newsletter (No. 12) = 嶺南彩園通訊 (第12期), Lingnan Gardeners, Kwan Fong Cultural Research And Development Programme, Lingnan University

Lingnan Gardeners Newsletter 嶺南彩園通訊

Winter Begins 立冬

The Effect Of Disturbance And Freshwater Availability On Lower Florida Keys’ Coastal Forest Dynamics, Danielle E. Ogurcak

FIU Electronic Theses and Dissertations

Coastal forest retreat in the Florida Keys during the 20^th century has been attributed to a combination of sea level rise and hurricane storm surge impacts, but the interactions between these two disturbances leading to forest decline are not well understood. The goal of my research was to assess their effects over a period spanning more than two decades, and to examine the relationships between these press and pulse disturbances and freshwater availability in pine rockland, hardwood hammock, and supratidal scrub communities. Impacts and recovery from two storm surges, Hurricanes Georges (1998) and Wilma (2005), were assessed with satellite-derived …

In Situ Studies Of Limestone Dissolution In A Coastal Submarine Spring, Rachel Marie Schweers

USF Tampa Graduate Theses and Dissertations

Limestone dissolution in karst environments is likely due to geochemistry of the water, the actions of microbial communities, and the effect of water flow. We explored the rate of limestone dissolution and will examine here the microbial communities associated with the limestone. A conduit within the brackish cave, Double Keyhole Spring, on the coast of central west Florida was the site of the experiment. PVC pipes (5cm x 16cm) were filled with crushed limestone that was screened to a 1.9cm – 2.54cm size range. There were three treatments (5 replicates each): Control - sealed autoclaved controls with limestone and conduit …

Integrating Resource Selection Into Spatial Capture-Recapture Models For Large Carnivores, K. M. Proffitt, Joshua F. Goldberg, Mark Hebblewhite, R. Russell, B. S. Jimenez, H. S. Robinson, K. Pilgrim, M. K. Schwartz

Wildlife Biology Faculty Publications

Wildlife managers need reliable methods to estimate large carnivore densities and population trends; yet large carnivores are elusive, difficult to detect, and occur at low densities making traditional approaches intractable. Recent advances in spatial capture-recapture (SCR) models have provided new approaches for monitoring trends in wildlife abundance and these methods are particularly applicable to large carnivores. We applied SCR models in a Bayesian framework to estimate mountain lion densities in the Bitterroot Mountains of west central Montana. We incorporate an existing resource selection function (RSF) as a density co-variate to account for heterogeneity in habitat use across the study area …

Thermal Patterns Constrain Diurnal Behavior Of A Ground-Dwelling Bird, J. Matthew Carroll, Craig A. Davis, R. Dwayne Elmore, Samuel D. Fuhlendorf, Eric T. Thacker

Wildland Resources Faculty Publications

Recently, gaining knowledge about thermal refuges for vulnerable species has been a major focal point of ecological studies, and this focus has been heightened by predicted temperature increases associated with global climate change. To better understand how organisms respond to thermal landscapes and extremes, we investigated the thermal ecology of a gallinaceous bird species (northern bobwhite; Colinus virginianus, hereafter bobwhite) during a key life history period. Specifically, our study focused on the brood-rearing period of precocial bobwhite chicks associated with brood-attending adults. We measured site-specific black bulb temperatures (Tbb) and vegetation characteristics across 38 brood tracking days and 68 random …

Rna Interference: Potato/Tomato Psyllid, Bactericera Cockerelli, Oral Delivery Of Double-Stranded Rnai Construct, Bijaya Kumar Sharma

Biology Theses

The potato/tomato psyllid, Bactericera cockerelli (Sulc.), is a serious and economically important pest of the potato, tomato and other solanaceous crops. This insect is the putative primary vector of the phytopathogenic bacterium Candidatus Liberibacter solanacearum which causes the Zebra Chip in potato. This disease has caused millions of dollars loss to the potato industry. While traditional management programs have minimized the negative impacts of this disease system, a sustainable alternative to chemical treatment is needed. Management of this pest by downregulation of endogenous mRNA using RNA interference (RNAi) technology is one of the best molecular method available; however, several technical …

On Flavonoid Accumulation In Different Plant Parts: Variation Patterns Among Individuals And Populations In The Shore Campion (Silene Littorea), José C. Del Valle, Mª Luisa Buide, Inés Casimiro-Soriguer, Justen B. Whittall, Eduardo Narbona

Biology

The presence of anthocyanins in flowers and fruits is frequently attributed to attracting pollinators and dispersers. In vegetative organs, anthocyanins and other non-pigmented flavonoids such as flavones and flavonols may serve protective functions against UV radiation, cold, heat, drought, salinity, pathogens, and herbivores; thus, these compounds are usually produced as a plastic response to such stressors. Although, the independent accumulation of anthocyanins in reproductive and vegetative tissues is commonly postulated due to differential regulation, the accumulation of flavonoids within and among populations has never been thoroughly compared. Here, we investigated the shore campion (Silene littorea, Caryophyllaceae) which exhibits …