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Optimizing The Analysis Of Electroencephalographic Data By Dynamic Graphs, Mehrsasadat Golestaneh

Electronic Thesis and Dissertation Repository

The brain’s underlying functional connectivity has been recently studied using tools offered by graph theory and network theory. Although the primary research focus in this area has so far been mostly on static graphs, the complex and dynamic nature of the brain’s underlying mechanism has initiated the usage of dynamic graphs, providing groundwork for time sensi- tive and finer investigations. Studying the topological reconfiguration of these dynamic graphs is done by exploiting a pool of graph metrics, which describe the network’s characteristics at different scales. However, considering the vast amount of data generated by neuroimaging tools, heavy computation load and …

Maternal Control Of Genomic Imprinting: Effects Of Infertility And Ovarian Stimulation In A Mouse Model, Michelle M. Denomme

Electronic Thesis and Dissertation Repository

Gametogenesis and early embryogenesis are important stages in which genome-wide epigenetic transitions required for early mammalian development are orchestrated. This is exemplified by the occurrence of genomic imprinting, where epigenetic mechanisms lead to the monoallelic expression of a subset of genes. Parental-specific DNA methylation in the gametes results in the distinct nonequivalence of the parental genomes in the early embryo. Changes from normal gamete and embryo development by impaired fertility or assisted reproductive technologies (ARTs) may disrupt the processes of imprint acquisition and imprint maintenance. My hypothesis is that aberrant imprinted methylation arises from impaired maternal fertility or ovarian stimulation …

When Faces "Feel" Familiar: The Role Of Affective Signals In Face Recognition, Lauren E. Dunphy

Electronic Thesis and Dissertation Repository

Previous research has suggested that there may be an increase in positive affect and autonomic arousal in response to seeing a familiar face. These studies rarely distinguish between faces for which there is only a “feeling” of familiarity, and faces for which this feeling is accompanied by the retrieval of semantic knowledge about the individual. In the current study we aimed to make that distinction. Participants made recognition judgments on famous and non-famous faces while galvanic skin responses (GSR), zygomatic muscle activity, and heart rate (HR) were recorded. We found increases in GSR (autonomic arousal), and zygomatic muscle activity (positive …

Transgenic Plants As Novel Bioreactors To Produce Human Protein, Nadiyah Alqazlan

Electronic Thesis and Dissertation Repository

Plants have emerged in the past decade as a suitable alternative to the current production systems for recombinant pharmaceutical proteins. This project aims to develop plants as a green bioreactor for large-scale and cost-effective production of human therapeutic proteins. Several binary plant expression vectors were designed and constructed to express a human protein. The constructed plant expression vectors were transferred to Agrobacterium prior to plant transformation. By using Agrobacterium-mediated plant transformation, both transient expression in N. benthamiana plants and stable expression of the human protein in Nicotiana tabacum cv.81V9 were achieved. Immunoassays such as Western blot and ELISA (the enzyme-linked …

Signaling Events During Extraembryonic Endoderm Differentiation, Jason Taek Ki Hwang

Electronic Thesis and Dissertation Repository

Mouse F9 cells differentiate into primitive endoderm (PrE) when treated with retinoic acid (RA) and into parietal endoderm (PE) following subsequent treatment with dibutyryl cAMP. Wnt6 is up-regulated in PrE cell, and although it is sufficient to induce differentiation by signaling through the canonical WNT/β-catenin pathway, the mechanism by which the Wnt6 gene is regulated is not known. In addition to WNT signaling, PrE differentiation is accompanied by an increase in reactive oxygen species (ROS). ROS have been implicated in regulating the canonical WNT/β-catenin signaling pathway through Nucleoredoxin (NRX), but whether they are sufficient to induce extraembryonic endoderm in vitro …

Effect Of Ascorbate On Coagulation And Fibrinolytic Factors In The Septic Microvasculature, Scott Swarbreck

Electronic Thesis and Dissertation Repository

Sepsis, a systemic inflammatory response to an infection, is a significant cause of morbidity and mortality worldwide. The microcirculation during sepsis fails, in part, due to microthrombosis and the resulting plugging of capillaries, precipitating organ failure. Intravenous injection of ascorbate has been shown to reduce capillary plugging, however the mechanism of this protective effect is unclear. We hypothesized that ascorbate-mediated destabilization of the microthrombi through promoting fibrinolysis could contribute to this protection.

We showed that streptokinase, a pro-fibrinolytic agent, reduced the capillary plugging to a similar degree as ascorbate. This similarity provided the impetus for studying the effect of ascorbate …

Interesting Shapes Of Vegetables: Is It A Strategy To Promote Consumption Among Preschool Children?, Salma H. Alhabshi

Electronic Thesis and Dissertation Repository

This study highlighted the low intake of vegetables by preschool children and determined whether changing the shape of vegetables increased their level of consumption. A new strategy of repeated exposure to interesting-shaped vegetables was a step aimed at increasing vegetable consumption by increasing the fun element in having vegetables as snacks. Vegetables are the less desirable food in comparison to more attractive unhealthy choices available to children, and discovering a strategy to promote vegetables is considered an important step in nutrition. The primary aim was to explore the effect of repeated exposure (eight times) of shaped vegetables on consumption by …

Effects Of Microrna156 On Flowering Time And Plant Architecture In Medicago Sativa, Banyar Aung

Electronic Thesis and Dissertation Repository

MiR156 regulates plant biomass production through regulation of members of Squamosa-Promoter Binding Protein-Like (SPL) genes. In this study, I investigated function of miR156 in Medicago sativa (alfalfa). Alfalfa plants overexpressing alfalfa miR156 and Lotus japonicus miR156 were generated, and the miR156 cleavage targets were validated. In silico analysis showed that some alfalfa sequence reads (~ 60 bp) are similar to miR156 precursors but the hairpin secondary structure could not be produced from these sequences. Of the five predicted target SPLs genes, three (SPL6, SPL12 and SPL13) contain miR156 cleavage sites and their expression …

Sirna Targeting Of Thymidylate Synthase, Thymidine Kinase 1 And Thymidine Kinase 2 As An Anticancer Therapy: A Combinatorial Rnai Approach, Christine Di Cresce

Electronic Thesis and Dissertation Repository

Thymidylate synthase (TS) is the only de novo source of thymidylate (dTMP) for DNA synthesis and repair. Drugs targeting TS protein are a mainstay in cancer treatment but off-target effects and toxicity limit their use. Cytosolic thymidine kinase (TK1) and mitochondrial thymidine kinase (TK2) contribute to an alternative dTMP-producing pathway, by salvaging thymidine from the tumour milieu, and may modulate resistance to TS-targeting drugs. We have previously shown that TS antisense molecules (oligodeoxynucleotides, ODNs, and small interfering siRNA, siRNA) sensitize tumour cells, both in vitro and in vivo, to TS targeting drugs. As both TS and TKs contribute to cellular …

Somatic Copy Number Mosaicism Contributes To Genomic Diversity In Mus Musculus, Andrea E. Wishart

Electronic Thesis and Dissertation Repository

Copy number variants (CNVs) are a source of genomic variation associated with altered phenotypes. Somatic copy number mosaicism results when different populations of cells in an individual differ due to de novo copy number changes (CNCs). Tissue-specific patterns of CNCs resulting in mosaicism have yet to be characterized in the mouse, an organism frequently used to model human diseases. Here, DNA was sampled from spleen, liver, and cerebellum of eight highly related mice selected from a familial unit. CNVs and CNCs were detected using the Mouse Diversity Genotyping Array with three computational methods (ConsecN, Partek, and PennCNV). Tissue-specific patterns of …

Sex Hormones And Sympathetic Nerve Activity, Charlotte W. Usselman

Electronic Thesis and Dissertation Repository

The purpose of this thesis was to test the hypothesis that changes in circulating sex hormone levels are associated with changes in muscle sympathetic nerve activity. The hypothesis was tested through the comparison of low- (early follicular [EF]) and high-hormone (midluteal [ML]) phases of the menstrual cycle and of hormonal contraceptive use (low hormone [LH] versus high hormone [HH]). The microneurography technique was used to compare both the frequency and size of bursts in muscle sympathetic nerve activity (MSNA) at baseline and during two sympatho-excitatory maneuvers: baroreceptor unloading elicited through lower body negative pressure, and chemoreflex stimulation elicited through a …

Development Of Non-Covalent Functionalization Of Carbon Nanotubes For Sirna Delivery, King Sun Siu

Electronic Thesis and Dissertation Repository

RNA interference (RNAi) therapy is promising for treating various diseases but the delivery of small interfering RNA (siRNA) is difficult. To overcome the technical difficulties of siRNA delivery, an efficient and targeted delivery of siRNA is required for efficient RNAi therapy. Single-walled carbon nanotubes (CNT) has been used for nucleic acid delivery such as siRNA delivery. It has been found that CNT can gain entry into the cells by a diffusion-like mechanism which was called “nano-needle”. However, the solubility of CNT is low in most of the solvents including water. Functionalization of CNT can be carried out to enhance the …

Study Of Virus Dynamics By Mathematical Models, Xiulan Lai

Electronic Thesis and Dissertation Repository

This thesis studies virus dynamics within host by mathematical models, and topics discussed include viral release strategies, viral spreading mechanism, and interaction of virus with the immune system.

Firstly, we propose a delay differential equation model with distributed delay to investigate the evolutionary competition between budding and lytic viral release strategies. We find that when antibody is not established, the dynamics of competition depends on the respective basic reproduction numbers of the two viruses. If the basic reproductive ratio of budding virus is greater than that of lytic virus and one, budding virus can survive. When antibody is established for …

Functional Anatomy Of The Anconeus: Muscle Architecture And Motor Unit Number Estimation, Daniel E. Stevens

Electronic Thesis and Dissertation Repository

Exploring muscle architecture in vivo and estimating the number of MUs in the human anconeus muscle have important implications related to the neuromuscular function of this muscle as a model for study in health and disease. The two studies presented in this thesis investigate the functional anatomy of the anconeus in 10 healthy young men (25±3y).

Ultrasound imaging has facilitated the measure of the architectural variables, fascicle length (L_F) and pennation angle (PA), in many human skeletal muscles in vivo. However, the functional anatomy of the anconeus has been investigated mainly from cadavers exclusively. Thus, the purpose …

Distinct Roles Of Bmp And Lkb1/Ampk Signalling Impacting Ovarian Cancer Spheroid Biology, Teresa M. Peart

Electronic Thesis and Dissertation Repository

High-grade serous (HGS) carcinoma, the most prevalent and most deadly subtype of epithelial ovarian cancer (EOC), presents unique therapeutic challenges since the majority of cases are diagnosed at advanced, metastatic stage. At this point widespread intraperitoneal metastatic lesions are numerous, which is why models that recapitulate disease dissemination are critical to uncover novel therapeutic targets. One of the initiating events in ovarian cancer metastasis is shedding from the primary tumour into the peritoneal cavity where cells must survive in suspension in order to seed secondary tumours. This non-adherent population of cells exists as multicellular aggregates, or spheroids; data from our …

The Effects Of Atypical Protein Kinase C On Tgfβ Signalling, Adrian D. Gunaratne

Electronic Thesis and Dissertation Repository

The transforming growth factor beta (TGFβ) signalling pathway is an essential regulator of many cellular processes including epithelial growth control, epithelial to mesenchymal transition (EMT), apoptosis, and the establishment of developmental fate. Alterations in TGFβ signalling patterns are associated with various pathological disorders such as fibrosis and cancer. In recent years it has become clear that regulation of TGFβ signalling is dependent on the trafficking and endocytosis of the TGFβ receptors, however, the factors that control these processes are still under investigation.

In this thesis, I examined the role of Protein Kinase C (PKC) in the regulation of TGFβ signalling …

Differential Effects Of Early-Life Seizures On Neuronal Inhibition In The Hippocampus Of Seizure-Prone And Seizure-Resistant Rats, Amir Abbas Mohseni Zonoozi

Electronic Thesis and Dissertation Repository

The aim of this study is to investigate the long-term physiological consequences of early-life seizures in rats of different genetic backgrounds. Rats bred to be prone (Fast) or resistant (Slow) to amygdala kindling were induced with status epilepticus (SE) on postnatal day (PND) 10 by injecting 3 mg/kg i.p. kainic acid; SE consisted of seizures for 2 h, including stage 5 seizures (lying down with four limb tonic-clonic convulsions). Littermates injected with the same volume of saline i.p. served as controls. On PND 40-55, population spikes (PSs) were recorded at the CA1 pyramidal cell layer in hippocampal slices in vitro …

Oligonucleotide Design For Whole Genome Tiling Arrays, Qin Dong

Electronic Thesis and Dissertation Repository

Oligonucleotides are short, single-stranded fragments of DNA or RNA, designed to readily bind with a unique part in the target sequence. They have many important applications including PCR (polymerase chain reaction) amplification, microarrays, or FISH (fluorescence in situ hybridization) probes. While traditional microarrays are commonly used for measuring gene expression levels by probing for sequences of known and predicted genes, high-density, whole genome tiling arrays probe intensively for sequences that are known to exist in a contiguous region. Current programs for designing oligonucleotides for tiling arrays are not able to produce results that are close to optimal since they allow …

Growth Of The Marine Fish-Killing Phytoflagellate, Heterosigma Akashiwo Under Emerging Coastal Regimes: Temperature, Eutrophication And Ocean Acidification, Cayla M. Bronicheski

Electronic Thesis and Dissertation Repository

Coastal oceans are fundamental to human economies, nutrition and recreation. Anthropogenic stressors have led to the acceleration of the nitrogen cycle, the accumulation of inorganic carbon in the earth’s atmosphere, the loss of UV-scavenging upper atmospheric ozone and the overall accumulation of deep elements from the earth’s crust to surface exposure. These changes have caused ocean acidification and eutrophication events in coastal waters and the impacts of these events on primary production and ocean biodiversity are not yet fully understood.

This study examined the effects of predicted future ocean conditions (salinity, temperature, reduced seawater pH and modified nitrogen supplies), on …

Environmental Factors Influencing Spring Migration Chronology Of Lesser Scaup (Aythya Affinis), Taylor A. Finger

Electronic Thesis and Dissertation Repository

Weather likely affects the timing and rate of migration by waterfowl to their breeding grounds. I hypothesized that timing of migration by lesser scaup during spring is affected by annual variation in temperature, precipitation and ice cover. I used satellite telemetry data, waterfowl survey data and corresponding weather data to evaluate competing models that explained variation in timing and rate of migration by lesser scaup. Timing of spring migration occurred earlier and faster when lesser scaup encountered warmer temperatures and greater precipitation, both of which are known to influence thermoregulation and habitat availability for waterfowl. Migration chronology of lesser scaup …

The Role Of Oxygen Tension And Insulin-Like Growth Factor Signaling In The Placental Mesenchymal Stem Cell Fate, Amer Youssef

Electronic Thesis and Dissertation Repository

The human placenta of different gestational ages is a readily available source for isolation of adult mesenchymal stem cell (MSC) for potential use in regenerative therapies. The chorionic villous region, the largest component of a placenta that interfaces with the maternal circulation, is a rich source of placental MSCs (PMSCs). To remain multipotent, PMSCs are best maintained in culture conditions that mimic the in vivo microenvironment. Insulin like growth factors (IGFs, IGF-I and -II) and oxygen tension are two of the most important microenvironmental factors in the placenta. They are of low concentration or tension respectively, at early gestation, and …

The Atp2c2 Gene As Transcribed From A Novel Transcriptional Start Site In Pancreatic Acinar Cells, Caitlin M. Sullivan

Electronic Thesis and Dissertation Repository

Strict regulation of cytosolic Ca²⁺ is essential to regulated exocytosis and proper pancreatic acinar cell function, controlled in part by pumps that shuttle Ca²⁺ out of the cytosol. Our laboratory identified a novel isoform of Secretory Ca²⁺ ATPase 2 (SPCA2) containing only the carboxy terminus. Pancreatic SPCA2, is an approximately 17-20 kDa, protein encoded by the Atp2c2 gene and is completely absent in Mist1^-/- acini.. The focus of this thesis was to understand transcriptional regulation of Atp2c2 in the pancreas. Pancreatic Atp2c2 appears to be transcribed from an alternative transcriptional start site (TSS) and is regulated …