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Human Dimensions Of A Participatory, Collaborative Modeling Process - Oysterfutures, Taylor Dawn Goelz Jan 2019

Human Dimensions Of A Participatory, Collaborative Modeling Process - Oysterfutures, Taylor Dawn Goelz

Dissertations, Theses, and Masters Projects

Participatory, collaborative modeling processes represent a unique decision-making technique within natural resources management that allows for the combination of stakeholder involvement with the analytical and predictive power of scientific models. The continued use of participatory modeling within decision-making processes depends in part upon the willingness of stakeholders to participate. Continued participation of stakeholders is key to the persistence and overall success of these processes, and yet limited information exists concerning the impacts of these processes on participants. The consideration of human dimensions advances our understanding of the design and function of participatory modeling processes, including their ability to create consensus …


Unexplored Aspects Of The Biotic Filter To Seedling Recruitment In Aquatic Environments, Andrew James Johnson Jan 2019

Unexplored Aspects Of The Biotic Filter To Seedling Recruitment In Aquatic Environments, Andrew James Johnson

Dissertations, Theses, and Masters Projects

Sexual reproduction provides submerged aquatic vegetation (SAV) populations unique opportunities for dispersal, genetic mixing, and resilience in the event of catastrophic population declines. Relative to asexual reproduction, sexual reproduction is a risky resource investment and can have a lower probability of success. A wide variety of abiotic and biotic interactions common in both terrestrial and aquatic environments can lead to significant mortality of seeds and seedlings. The goal of this dissertation is to explore the diversity of biological interactions that influence seed and seedling survival in SAV that drive the population dynamics and restoration success of SAV species. A combination …


Partitioning Of Hydrophobic Organic Contaminants And Microbial Communities On Microplastics, Kelley Ann Uhlig Jan 2019

Partitioning Of Hydrophobic Organic Contaminants And Microbial Communities On Microplastics, Kelley Ann Uhlig

Dissertations, Theses, and Masters Projects

Microplastic contamination of aquatic environments has only recently caught the attention of scientists, regulators and the public. Microplastics are typically more recalcitrant than naturally occurring polymers and so have the potential to cause a range of issues, including increased exposure of marine life to chemical contaminants sorbed to or leached from microplastics, negative impacts due to ingestion of microplastics by biota, and the potential to carry and transport pathogenic and invasive species long distances. Bio-based, bio-degradable polymers have begun to gain market share as an alternative to traditional petrochemical-based plastics, but not much is known about their impacts in marine …


Impacts Of Margalefidinium Polykrikoides And Alexandrium Monilatum On Oysters Cultured In Lower Chesapeake Bay, Clara L. Robison Jan 2019

Impacts Of Margalefidinium Polykrikoides And Alexandrium Monilatum On Oysters Cultured In Lower Chesapeake Bay, Clara L. Robison

Dissertations, Theses, and Masters Projects

Harmful algal blooms (HABs) are expanding globally and are anticipated to continue increasing with climate change. Two dinoflagellate species, Margalefidinium polykrikoides and Alexandrium monilatum, form extensive and dense blooms most summers in the lower Chesapeake Bay. Alexandrium monilatum, which produces the toxin goniodomin A, tends to bloom soon after M. polykrikoides, for which a toxin has not yet been identified. Previous laboratory studies and a more limited number of field studies indicate mortality and pathology in multiple shellfish species associated with exposure to M. polykrikoides and A. monilatum. However, the impacts of sequential exposure to both HAB species on marine …


Modeling The Effects Of Supercomplex Formation And Stress Response On Alzheimer’S Disease Progression, Morgan Griffin Shelton Jan 2019

Modeling The Effects Of Supercomplex Formation And Stress Response On Alzheimer’S Disease Progression, Morgan Griffin Shelton

Dissertations, Theses, and Masters Projects

Alzheimer’s disease is a specific form of dementia characterized by the aggregation of Amyloid-β plaques and tau tangles. New research has found that the formation of these aggregates occurs after dysregulation of respiratory activity and the production of radical oxygen species. Proteomic data shows that these changes are also related to unique gene expression patterns. We investigate the impact of these findings on new therapeutic options via metabolic flux analysis of sirtuin stress response pathways and respiratory supercomplex formation. Our results indicate CRISPR Cas-based gene therapy focused on upregulating stable CIII expression, and protective changes in SIRT1 and AMPK expression …


Invasive Species Research In Compensatory Wetland Mitigation: Investigating Plant Community Composition And Environmental Correlates With Three Invasive Plants, Dakota Hunter Jan 2019

Invasive Species Research In Compensatory Wetland Mitigation: Investigating Plant Community Composition And Environmental Correlates With Three Invasive Plants, Dakota Hunter

Dissertations, Theses, and Masters Projects

Invasive plant species can alter natural communities and degrade ecosystem function, yet the factors influencing species invasion are poorly understood. Understanding how environmental factors affect plant invasion on compensatory wetland mitigation sites would allow wetland managers to approach invasive species management using a proactive approach (prior to invasion), thus minimizing the likelihood of invasive plants colonizing the system and degrading ecosystem function. In Chapter 1, I introduce the concepts and relevant literature used repeatedly in my project. In Chapter 2, I examine which key environmental factors are associated with altered plant community structure and invasive species prevalence on compensatory wetland …


An Exploration Into The Identification, Etiology, And Distribution Of Idiopathic Blindness In The American Lobster, Homarus Americanus, Addison T. Ochs Jan 2019

An Exploration Into The Identification, Etiology, And Distribution Of Idiopathic Blindness In The American Lobster, Homarus Americanus, Addison T. Ochs

Dissertations, Theses, and Masters Projects

Idiopathic blindness is an environmental disease observed in the American lobster, Homarus americanus H. Milne Edwards, 1837. The only diagnostic assay for idiopathic blindness has been the histological assessment of the eye, which is a time consuming, invasive, and a delicate procedure. I investigated several tools, including the otolaryngoscope and enhanced counterstaining using Bouin’s fixative as alternative, rapid methods for the detection of idiopathic blindness in lobsters. I applied these new diagnostic techniques to toxicology studies to explore a possible lead on the etiology of this condition. Divalent manganese is a well-established neurotoxin released from sediments under hypoxic conditions. Previous …


Animal Waste And Antibiotic Impacts On Microbial Denitrification In Terrestrial And Aquatic Ecosystems, Miguel Albergaria Furtado Semedo Jan 2019

Animal Waste And Antibiotic Impacts On Microbial Denitrification In Terrestrial And Aquatic Ecosystems, Miguel Albergaria Furtado Semedo

Dissertations, Theses, and Masters Projects

The global increase in livestock and poultry production observed in the last decades has led to an increase in animal waste generated. The animal waste contains high levels of nitrogen and may carry antibiotics that can disturb important microbial activities such as denitrification in terrestrial and aquatic ecosystems. Disturbances of microbial denitrification can have detrimental consequences to environmental health. In the terrestrial environment, denitrification is an important source and sink of N2O, a potent greenhouse gas in the atmosphere. In aquatic ecosystems, denitrification is a dominant NO3- removal pathway, contributing to prevent eutrophication. The overall goal of this dissertation is …


Applying The Concept Of Thresholds In Ecotoxicology With Focus On The Joint Effects Of Habitat Fragmentation And Contamination, Marcos Krull Jan 2019

Applying The Concept Of Thresholds In Ecotoxicology With Focus On The Joint Effects Of Habitat Fragmentation And Contamination, Marcos Krull

Dissertations, Theses, and Masters Projects

A threshold can be defined as the point where small changes in an environmental driver produce an abrupt change within a biological system. These changes can occur at different levels of organization, from organisms to ecosystems. Although thresholds seem to be receiving more attention by ecotoxicologist, not much is known about how contaminants cause or affect thresholds at the landscape level, such as habitat fragmentation thresholds. Habitat fragmentation thresholds can occur due to rapid changes in the landscape structure after a certain amount of habitat is lost, which can cause abrupt effects on the movement of organisms, population abundance and …


Ecology And Evolution Of Common Milkweed, Angela Ricono Nov 2018

Ecology And Evolution Of Common Milkweed, Angela Ricono

Dissertations, Theses, and Masters Projects

All organisms must interact with and adapt to their surrounding environment. There are myriad ways in which species accomplish this; ultimately resulting in the vast diversity of life on earth today. Changes in the environment can have profound impacts on an organisms' ability to compete and utilize their surroundings. Plants are particularly impacted by local environmental differences because of the fact that they are immobile. This environmental variation exists at both large and small spatial scales. For example, on larger scales, forces such as fire and grazers can remove dominant plant competitors. on smaller scales, variation in resource availability (e.g. …


The Effects Of Dietary Mercury Exposure On Male Fertility In The Zebra Finch, Ananda Menon Nov 2018

The Effects Of Dietary Mercury Exposure On Male Fertility In The Zebra Finch, Ananda Menon

Dissertations, Theses, and Masters Projects

Sperm traits, including morphology, number and function, have been linked to fertilization ability and offspring quality in several species. However, many of these traits are artificially influenced by anthropogenic pollutants. Mercury, a globally distributed heavy metal pollutant, has been linked to altered testicular morphology and reduced fertility in many vertebrates. in this study, we exposed domestic male zebra finches (Taenopygia guttata) to dietary mercury at concentrations found in prey species in a highly polluted watershed region. We then compared sperm traits from these males to those of controls, and found a significant effect of mercury on sperm length and variability. …


Immune Changes In The Anterior Kidney Of Spawning Sockeye Salmon, Meaghan K. Smith Oct 2018

Immune Changes In The Anterior Kidney Of Spawning Sockeye Salmon, Meaghan K. Smith

Dissertations, Theses, and Masters Projects

During the return journey to their spawning grounds, sockeye salmon are exposed to various pathogens and undergo major endocrine changes. Little is known about how these changes affect their immune system. The immune system of salmon is similar to mammals; myeloid lineage cells provide the first response to infection and B lineage cells protect against specific pathogens. After activation by pathogen, B cells may differentiate into long-lived plasma cells (LLPCs) in the anterior kidney, where they can survive for years, continuously secreting protective antibody. This research focused on salmon from two rivers, the Kenai and the Copper River, and characterized …


Investigating The Spatiotemporal Distribution Of A Tick-Borne Pathogen, Ehrlichia Chaffeensis, Dylan Simpson Aug 2018

Investigating The Spatiotemporal Distribution Of A Tick-Borne Pathogen, Ehrlichia Chaffeensis, Dylan Simpson

Dissertations, Theses, and Masters Projects

The incidence of tick-borne diseases is on the rise in the US and around the world, due in part to emerging pathogens. However, the environmental drivers affecting these pathogens remain unclear. Most research on the topic in the US has focused on Borrelia burgdorferi, which causes Lyme, but it is unknown if the same conditions that affect B. burgdorferi also affect other pathogens, which may be carried by other ticks or reservoirs. The answer will help determine generalizable principles in tick-borne pathogen ecology, if they exist, as well as better manage for tick-borne pathogen risk in areas at risk from …


Shifting Patterns Of Ribbed Mussel Distribution And Ecosystem Services In Response To Sea Level Rise, Robert Earl Isdell Jul 2018

Shifting Patterns Of Ribbed Mussel Distribution And Ecosystem Services In Response To Sea Level Rise, Robert Earl Isdell

Dissertations, Theses, and Masters Projects

Throughout the salt marshes of the US Atlantic Coast, ribbed mussels (Geukensia demissa, Dillwyn, 1817) and smooth cordgrass (Spartina alterniflora Loisel) form an important mutualistic relationship. Spartina provides habitat and promotes settling of ribbed mussels, which, in turn, stabilize and fertilize the Spartina and sediment. This relationship, however, is at risk of interruption due to sea level rise, erosion, and coastal development. Among the most at-risk segments of the marsh, the front (waterward) edge of the marsh is also where ribbed mussels and their ecosystem services are concentrated. Despite their importance of ribbed mussels to the salt …


Utilization Of Unnatural Amino Acids To Modulate Protein Structure And Function, John Halonski Apr 2018

Utilization Of Unnatural Amino Acids To Modulate Protein Structure And Function, John Halonski

Dissertations, Theses, and Masters Projects

Proteins are capable of an astounding array of functions using only the 20 canonical amino acids; however, the ability to add new functional groups to the genetic code through the utilization of unnatural amino acids (UAAs) has greatly expanded our ability to study and manipulate proteins. By expanding the diversity of functional groups within proteins, a wide variety of applications in industry as well as in fields such as diagnostics, biochemistry, and materials science are now possible. These applications have further been expanded through the development and optimization of bioorthogonal reactions which can occur under physiological conditions with a high …


The Development Of Fiddler Crabs (Uca Spp.) As A Comparative Model System For The Parasitic Dinoflagellate, Hematodinium Perezi And Its Natural Host The Blue Crab, Callinectes Sapidus, Patricia Anne O'Leary Jan 2018

The Development Of Fiddler Crabs (Uca Spp.) As A Comparative Model System For The Parasitic Dinoflagellate, Hematodinium Perezi And Its Natural Host The Blue Crab, Callinectes Sapidus, Patricia Anne O'Leary

Dissertations, Theses, and Masters Projects

Herein, I have completed several experiments which encompass developing fiddler crabs as a model system, as well as sentinel and temperature studies to investigate biotic and abiotic factors in parasite transmission. My studies show which factors prevent, delay, or accelerate transmission and progression of H. perezi. The fiddler crab experiments by chapter are as follows: Chapter 1. I screened adult and juvenile fiddler crab populations for naturally occurring H. perezi infections at endemic and non-endemic sites. No natural infections were found in the adult or juvenile populations (Chapter 1 and 3). I completed inoculation trials with U. minax, U. pugnax, …


Genetic Analyses Of Striped Bass In The Chesapeake Bay: An Investigation Of Connectivity Among Virginia Subestuaries And An Evaluation Of Close-Kinship Mark Recapture Methodology To Estimate Spawning Abundance., Savannah Michaelsen Jan 2018

Genetic Analyses Of Striped Bass In The Chesapeake Bay: An Investigation Of Connectivity Among Virginia Subestuaries And An Evaluation Of Close-Kinship Mark Recapture Methodology To Estimate Spawning Abundance., Savannah Michaelsen

Dissertations, Theses, and Masters Projects

The striped bass (Morone saxatilis) is an anadromous fish distributed along the eastern coast of North America that currently supports one of the most lucrative and important commercial and recreational fisheries in the region. Since the recovery of the Atlantic stock after a collapse in the late 1970s, studies have focused on understanding the connectivity of major spawning grounds and improving methods of abundance estimation. Studies support strong site fidelity of striped bass to major estuaries along the Atlantic coast, but there has been disagreement about connectivity within the largest spawning ground, the Chesapeake Bay. Additionally, no estimates exist for …


Improving Stock Assessments And Management Advice For Bluefin Tunas And Other Highly Migratory Species, Lisa Elma Ailloud Jan 2018

Improving Stock Assessments And Management Advice For Bluefin Tunas And Other Highly Migratory Species, Lisa Elma Ailloud

Dissertations, Theses, and Masters Projects

For years bluefin tuna has been the poster child for overfishing and poor management. However, recent improvements in data collection, catch monitoring and international cooperation are providing an opportunity to reverse the perception of a fishery that is doomed to collapse. Stock assessments are conducted routinely to monitor the abundance and productivity of exploited fish stocks so managers can determine how many fish can be sustainably harvested each year. Should a stock be declared overfished or under-going overfishing, the science behind stock assessments also equip managers with the knowledge necessary to make decisions about what short-term and long-term management measures …


Effects Of Anthropogenic Noise On Songbird Social Networks, Carly Elizabeth Hawkins Jan 2018

Effects Of Anthropogenic Noise On Songbird Social Networks, Carly Elizabeth Hawkins

Dissertations, Theses, and Masters Projects

Anthropogenic noise, which is increasing globally, affects birds from gene expression up through alteration of community composition. as urbanization pushes further into undisturbed habitat, noise often disperses birds away from the point source. The impacts of this dispersal on surrounding quieter areas is not well understood. Therefore, in the first chapter, we sought to understand how noise-related dispersal affected the sociality of groups of songbirds as they moved away from the source of noise. as the displaced birds would likely be forced to occupy a smaller area that may already have resident individuals, we predicted that displaced birds would show …


Acetylation Controls Thyroid Hormone Receptor Intracellular Localization And Intranuclear Mobility, Cyril S. Anyetei-Anum Jan 2018

Acetylation Controls Thyroid Hormone Receptor Intracellular Localization And Intranuclear Mobility, Cyril S. Anyetei-Anum

Dissertations, Theses, and Masters Projects

Thyroid hormone receptor (TR) is responsible for mediating the expression of genes involved in growth, development, and homeostatic regulation, in response to thyroid hormone. There are two main subtypes of TR, TRα1 and TRβ1, that mediate these physiological processes. Dysregulation of TR mediated processes is a contributing factor in disease pathology. Our prior studies show that TR is shuttled rapidly between the nucleus and cytosol, while localizing primarily to the nucleus. TRα1 contains two nuclear localization signals (NLSs) that act together to confer strong nuclear localization, while TRβ1 only contains one NLS (NLS-1). Recently, we found that the intracellular localization …


Range-Wide Variation In Common Milkweed Traits And Its Effect On Larvae Of The Monarch Butterfly, David De La Mater Jan 2018

Range-Wide Variation In Common Milkweed Traits And Its Effect On Larvae Of The Monarch Butterfly, David De La Mater

Dissertations, Theses, and Masters Projects

Plants play an important role in structuring ecological communities from the bottom up through interactions with herbivores, and environmental variation can affect these interactions. We use the interaction between common milkweed (Asclepias syriaca) and the monarch butterfly (Danaus plexippus) to examine 1) the role of environmental variation in dictating plants traits, and 2) how those variations affect herbivores. We quantified intraspecific trait variation in 53 natural common milkweed populations, then remeasured these traits when population representatives were regrown in a common garden to control for environmental variation. We then measured growth, performance, and survival of monarch larvae feeding on these …


Impacts Of Atmospheric Nitrogen Deposition And Coastal Nitrogen Fluxes On Chesapeake Bay Hypoxia, Fei Da Jan 2018

Impacts Of Atmospheric Nitrogen Deposition And Coastal Nitrogen Fluxes On Chesapeake Bay Hypoxia, Fei Da

Dissertations, Theses, and Masters Projects

Although rivers are the primary source of dissolved inorganic nitrogen (DIN) inputs to the Chesapeake Bay, direct atmospheric DIN deposition and DIN fluxes from the continental shelf can also significantly impact Chesapeake Bay hypoxia. The relative role of these additional sources of DIN has not previously been thoroughly quantified. In this study, the three-dimensional Estuarine-Carbon-Biogeochemistry model embedded in the Regional Ocean Modeling System (ChesROMS-ECB) is used to examine the relative impact of these three DIN sources. Model simulations highlight that DIN inputs from the atmosphere have roughly the same impact on hypoxia as the same gram for gram change in …


Individual- And Population-Level Effects Of Temperature And Hypoxia On Two Demersal Fishes In Chesapeake Bay, Benjamin Marcek Jan 2018

Individual- And Population-Level Effects Of Temperature And Hypoxia On Two Demersal Fishes In Chesapeake Bay, Benjamin Marcek

Dissertations, Theses, and Masters Projects

Anthropogenically-induced climate change has resulted in increases in water temperature and the frequency and severity of hypoxic events in coastal areas worldwide. Temperature and hypoxia affect fishes' energetics which can, in turn, be reflected in changes in reproductive success and shifts in spatial distributions. in an effort to quantify these changes in Atlantic croaker (Micropogonias undulatus) and spot (Leiostomus xanthurus) in Chesapeake Bay. I: (1) estimated standard and maximum metabolic rates and hypoxia tolerances at five temperatures (10, 15, 20, 25 and 30°C) using intermittent-flow respirometry, (2) examined the effects of hypoxia exposure on metrics of reproductive potential and, (3) …


Consumption Patterns Of Chesapeake Bay Fishes, Christopher James Sweetman Jan 2018

Consumption Patterns Of Chesapeake Bay Fishes, Christopher James Sweetman

Dissertations, Theses, and Masters Projects

As fisheries management moves away from single-species approaches and towards more holistic, ecosystem-based approaches, physiological and ecological interactions need to be explicitly considered and mechanistically understood. Accurate portrayals of food web interactions and the direction and magnitude of energy flow between predator and prey populations are fundamental components to further develop ecosystem-based fisheries management (EBFM). to bolster information that is required within an EBFM framework in the Chesapeake Bay, I conducted research designed to advance traditional dietary studies and better understand the form and structure within the Bay's food web. This research relied on controlled feeding experiments, comprehensive sampling of …


Reproductive Investment In Crassostrea Virginica As An Indicator Of A Tolerance Response To Perkinsus Marinus, Lauren Irene Huey Jan 2018

Reproductive Investment In Crassostrea Virginica As An Indicator Of A Tolerance Response To Perkinsus Marinus, Lauren Irene Huey

Dissertations, Theses, and Masters Projects

The Chesapeake Bay region values oysters for the ecosystem services, lucrative fishery, and historical significance that the species embodies; however, over the last half century, oyster abundances have been reduced to historical lows. Two protozoan parasites, Perkinsus marinus and Haplosporidium nelsoni, have been major influences on oyster populations, especially in high-salinity regions. Today, the population is recovering; catches have increased and oysters have expanded spatially. to investigate the cause of the recovery, three measurements were made on slides of oysters from a histological archive collected during summer at Wreck Shoal in the James River from 1988–2017: oocyte diameter, oocyte density, …


Assessing The Impact Of Land Use And Climate Change On Streamflow And Nutrient Delivery To The New River Estuary, Nc, Shanna Williamson Jan 2018

Assessing The Impact Of Land Use And Climate Change On Streamflow And Nutrient Delivery To The New River Estuary, Nc, Shanna Williamson

Dissertations, Theses, and Masters Projects

Freshwater inflow influences numerous physical, chemical, and biological characteristics of estuaries. The influx of freshwater to an estuary typically serves as an important source of allochthonous material from which primary producers derive their energy and transfer this energy to higher trophic levels. Any changes to freshwater flow subsequently impacts nutrient delivery and indirectly impacts organisms across multiple trophic levels. Anthropogenic changes to coastal land use and climate both act to threaten the integrity of estuarine systems by influencing freshwater inflow and dissolved nutrient input. Watershed loading models such as the Regional Nutrient Management (ReNuMa) model offer the ability to estimate …


Movements, Habitat Utilization, And Post-Release Survival Of Cobia (Rachycentron Canadum) That Summer In Virginia Waters Determined Using Pop-Up Satellite Archival Tags (Psats), Douglas Jensen Jan 2018

Movements, Habitat Utilization, And Post-Release Survival Of Cobia (Rachycentron Canadum) That Summer In Virginia Waters Determined Using Pop-Up Satellite Archival Tags (Psats), Douglas Jensen

Dissertations, Theses, and Masters Projects

Cobia (Rachycentron canadum) is a cosmopolitan marine fish inhabiting tropical, sub-tropical, and temperate marine and estuarine waters. Recent changes in U.S. cobia management have sparked controversy and highlighted limitations in our understanding of seasonal movement patterns and problems with estimating recreational harvests. Consecutive years (2015 and 2016) of estimated overharvests from the Atlantic Migratory Group stock triggered accountability measures to prevent overfishing by recreational anglers. My project employed pop-up satellite archival tags (PSATs) to study cobia movements, habitat utilization, and post-release survival. It was, therefore, designed to enhance knowledge of cobia biology and aid sustainable management. We deployed 36 PSATs …


Crab Larval Abundance And Settlement Patterns In A Changing Chesapeake Bay, Itchika Sivaipram Jan 2018

Crab Larval Abundance And Settlement Patterns In A Changing Chesapeake Bay, Itchika Sivaipram

Dissertations, Theses, and Masters Projects

All estuarine crabs have two larval stages, the zoea and the megalopa. Zoeae are entirely planktonic, whereas megalopae begin as plankton before beginning to search for settlement substrates as late stage megalopae. At both stages, crab larvae are subject to environmental conditions of the estuary. With changing environmental conditions due to anthropogenic activities and climate change, an understanding of how these planktonic larvae respond to environmental conditions is necessary for understanding subsequent larval supply to benthic populations and implication for fisheries management and habitat restoration. For this dissertation, I: 1) analyzed long-term timeseries in the lower Chesapeake Bay for spatial …


The Relationship Between Reproduction And Mortality In Triploid Crassostrea Virginica, Joseph L. Matt Jan 2018

The Relationship Between Reproduction And Mortality In Triploid Crassostrea Virginica, Joseph L. Matt

Dissertations, Theses, and Masters Projects

Unusual mortalities of cultured Crassostrea virginica in late spring have been reported from farms in the Chesapeake Bay from 2014 to 2017. None of the usual causes (e.g. disease, poor husbandry) were likely responsible, and mortalities occurred without clear signs of biological or physical stressors. Mortalities in the spring of 2014 were particularly high on over a dozen farms in Virginia, most of which were on the bayside of the Eastern Shore. Estimated losses were over 50%; however, mortalities only occurred within a four-week period between mid-May and early June. Farmers that had unusually high mortality in their crop were …


Multi-Scale Phylogenomics Of Gadiformes With Emphasis On Hakes (Merluccius, Merlucciidae), Adela Y. Roa-Varon Jan 2018

Multi-Scale Phylogenomics Of Gadiformes With Emphasis On Hakes (Merluccius, Merlucciidae), Adela Y. Roa-Varon

Dissertations, Theses, and Masters Projects

Gadiformes include some of the most important commercially harvested fishes in the world (e.g. cods, hakes, and grenadiers). Currently, different authors recognize anywhere between 11 and 14 families, approximately 84 genera, and over 600 species. The monophyly of the order has been supported by both morphological and molecular data, yet the relationships among families and subfamilies remain poorly understood and interpreting phylogenetic patterns to date has been difficult. My dissertation research on multi-scale phylogenetics of Gadiformes with emphasis on hakes (Merluccius, Merlucciidae) has three primary objectives: (1) to improve the understanding of the phylogenetic relationships among families of Gadiformes (Teleostei); …