Digital Commons Network^™

The Ecosystem Role Of Fishes In Lotic Environments, Christopher C. Wheeler

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

It is important for humans to understand how ecosystems work because we depend on them for a variety of products and services. For example, rivers and streams provide fisheries, improved water quality, and recreational opportunities to many individuals. In rivers, interactions among fishes, other stream plants and animals, and the physical river environment can influence continued provision of these valuable services. However, the role played by many freshwater fishes in the provision of these services remains unknown. Additionally, it is important to identify different factors that affect the outcome of interactions involving riverine fishes. To address these issues, I evaluated …

Estimating Baseline Population Parameters Of Urban And Wildland Black Bear Populations Using A Dna-Based Capture-Mark-Recapture Approach In Mono County, California, Jonathan L. Fusaro

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Prior to European settlement, black bear (Ursus americanus) were far less abundant in the state of California. Estimates from statewide harvest data indicate the California black bear population has tripled in the last 3 decades. Bears inhabit areas they formally never occurred (e.g., urban environments) and populations that were at historically low densities are now at high densities. Though harvest data are useful and widely used as an index for black bear population size and population demographics statewide, it lacks the ability to produce precise estimates of abundance and density at local scales or account for the numerous …

Investigations Of Cho 1-15 And Silk Gland Cell Line Development, Susan Kathleen Robinson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The BioProcessing Demonstration and Training Laboratory was established with a collaboration between Utah State University and Thermo Fisher-Scientific, Inc. This lab was developed into a fully functioning tissue culture facility. Demonstration of tissue culture procedures were necessary for the lab to be industry-fully qualified. The CHO 1-15 cell line protocols were optimized by establishing conditions for reproducibility in shaker flasks and bioreactors (2 to 250 L capacity). CHO 1-15 is the cell line of choice for protein production in the bio-manufacturing industry. Oxidative stress is a problem in the industry because it can cause a decrease in protein production. Mesobiliverdin …

Ecomorphological And Genetic Investigations Into The Utah Lake, Ut Sucker Complex With Comparisons To The Jackson Lake, Wy Sucker Complex, David D. Cole

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Natural selection within the sucker family of fishes has produced populations including typical benthic (bottom-feeding) suckers (Catostomus) and lakesuckers (Chasmistes), mid-water plankton eaters, in several large western North American lakes. Suckers of intermediate morphology (shape) exist in a continuum of head, mouth, and body characteristics between these two extremes. All current lakesuckers are listed Endangered, and population declines have been attributed in part to hybridization with their Catostomus neighbors.

Chapter 2 describes the investigation of the relationship between morphology and genetics of June sucker, a lakesucker, and Utah sucker, a benthic sucker, in Utah Lake, Utah. …

Usda Forest Service Perspectives On Forest Management In A Changing Climate, Jamie E. Laatsch

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As climate change becomes more problematic for the Forest Service (FS) and other federal land management agencies in the U.S., it has become increasingly important to understand how their employees view climate change and related challenges. This study examined how FS employees in the Intermountain West view forest management in the face of climate change, what barriers and opportunities they see in terms of dealing with climate change, and how different levels of agency management view climate change-related issues differently. This study found that many FS employees believe climate change is an important issue; however, they have not done much …

Yield And Quality Of First-Year Corn Silage Following Alfalfa Stand Termination As Affected By Tillage, Herbicide, And Nitrogen Fertilizer, Jason Daniel Clark

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Glyphosate-containing herbicides such as Roundup® are a common and highly effective method to terminate alfalfa stands. With the development of glyphosate-resistant (Roundup Ready®) alfalfa, this tool is no longer an option. The purpose of this research was to determine the optimal termination methods to use when rotating from glyphosate-resistant alfalfa into silage corn. Studies were conducted in 2012 and 2013 in Cache Junction and Cornish, Utah using five different combinations of tillage type and timing (fall conventional till, spring conventional till, fall strip-till, spring strip-till, and no-till), four 2,4-D plus dicamba herbicide timings (fall, spring, in-crop, and a control), and …

Plant And Animal Performance In Tall Fescue And Tall Fescue/Legume Pastures, Troy J. Bingham

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Tall fescue is the one of most common grasses in irrigated pastures throughout the Intermountain West. Two limitations of tall fescue are a decrease in productivity during hot summer months and the need for supplemental nitrogen (N). The objective of this research was to compare tall fescue-alfalfa (TF+ALF), tall fescue-birdsfoot trefoil (TF+BFT), tall fescue-nitrogen fertilizer (TF+N), and tall fescue without nitrogen fertilizer (TF-N) on forage yield, nutritional quality, and livestock performance. Research plots were established at the Utah State University Pasture Research Facility in Lewiston, UT in 2010 and grazed in 2012 and 2013. Treatments were arranged in a randomized …

Ambient Temperature, Calf Intakes, And Weight Gains On Preweaned Dairy Calves, Sheldon D. Holt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

There has been little research conducted on the physiological response of calves to temperatures outside thermal neutrality and its effects on intake and weight gain. The effects of ambient temperature on Holstein dairy calves intakes and weight gain were evaluated over a 12-month period at the Utah State University Caine Dairy.

Ambient temperature was monitored using a weather station located 1.3 kilometers from the dairy. Calf health was monitored daily using the University of Wisconsin-Madison School of Veterinary Medicine scoring criteria. Calves were fed whole milk and free choice calf starter. Weight gain, wither and hip height, starter intake, and …

An Evaluation Of The Relative Performance Of Diploid Versus Triploid Brook Trout With Consideration Of The Influence Of Lake Characteristics, Andy Dean

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Brook trout are native to the east and Midwestern United States. Brook trout have become a popular sport fish in the western United States and are currently widely stocked to provide sport fishing opportunities throughout the west. The Utah Division of Wildlife Resources (UDWR) regularly stocks brook trout into high mountain lakes in the Uinta Mountains to provide one of these popular fisheries. Stocking non-natives to high mountain lakes can cause competition with native species for food and habitat resources and provides source populations for dispersal of non-natives downstream. Triploid (sterile) fish may provide an opportunity to stock non-native fish …

Linking Temporal And Spatial Variability Of Millennial And Decadal-Scale Sediment Yield To Aquatic Habitat In The Columbia River Basin, Elijah Portugal

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Historically the Columbia River was amongst the most productive salmonidbearing watersheds in North America. Currently, salmonid populations have collapsed and are estimated at ten percent of historic levels. Because of this, there are thirteen, Endangered Species Act (ESA) listed distinct population segments within the Columbia River Basin (CRB). The Bonneville Power Administration (BPA) operates a substantial number of hydroelectric dams within the CRB. As the dams effectively block anadromy and are thought to be extremely detrimental to the long-term persistence of salmonid populations within the CRB, the BPA funds a series of programs to mitigate the impacts of dam operation. …

Pop2: A Potential Regulator Of Hmt1-Catalyzed Arginine Methylation In Yeast, Celeste Excell

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Protein arginine methylation is an important post-translational modification that is vital in regulating various cellular processes such as gene transcription, cell signaling, and RNA processing. Protein arginine methyltransferases (PRMTs) are responsible for performing this important modification. PRMT1 (protein arginine methyltransferase 1) and Hmt1 (hnRNP methyltransferase 1) are the predominant PRMTs in humans and yeast, respectively. Despite growing momentum in this field, relatively little is understood about PRMT regulation. Further work discovering how PRMTs are regulated will greatly advance our understanding of diseases where PRMTs have been implicated, such as heart disease, viral pathogenesis, and cancer.

It has been discovered that …

Nutrient Utilization, Lactational Performance, And Profitability Of Dairy Cows By Feeding Protein Supplements In High-Forage Lactation Diets, Kathryn Neal

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Due to the increasing cost of soybean meal and concerns of excess N being excreted into the environment, new protein supplements have been developed. Two products that have shown potential in increasing N utilization efficiency are slow release urea (SRU; Optigen) and ruminal escape protein derived from yeast (YMP; DEMP). The objective of this study was to assess the effects of feeding these 2 supplements in high-forage [(54% of total dietary dry matter (DM)] dairy diets on nutrient utilization, feed efficiency, lactational performance of dairy cows, and their impacts on income-over feed costs. Twelve …

Developing A Field Indicator For Suckering Ability Of Quaking Aspen, Abbey M. Hudler Oksness

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Quaking aspen is an ecologically valuable deciduous tree species in the high elevation environment typical across many parts of western North America. It is a clonal tree species which primarily depends on vegetative regeneration by root suckering after an aboveground disturbance, e.g., wildfire, removes the stems. A flush of suckers will be stimulated after a disturbance and the resulting regeneration relies on available resources from the undamaged root system for resprouting. Due to wildfire suppression efforts of the last century, many aspen stands are considered mature, overmature, or decadent and lack regeneration to replace the overstory mortality. In the absence …

Assessing Changes In Waterfowl Population And Community Dynamics, Beth E. Ross

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Studying long-term ecological studies can help ecologists understand what causes populations and communities of wildlife to change. Understanding these causes can help guide conservation efforts. Additionally, results from long-term datasets allow ecologists to predict how populations may shift with global change. Ecologists can then determine necessary management action to maintain sustainable populations in the future. However, there can be a large amount of “noise” in a long-term dataset. If ecologists fail to account for this noise, they may make incorrect management decisions. For example, samples taken in two nearby locations will likely be more similar than samples taken from two …

Quantum Mechanical Study Of Weak Molecular Interactions, Upendra Adhikari

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Molecular interactions play key role in the existence of biomolecules like proteins and nucleic acids, and various materials. Molecular interactions are weak forces that hold different molecules or different fragments of the same molecule together, and are often referred to as noncovalent interactions. Due to the complexity in biomolecules, these interactions are still poorly understood. This dissertation presents results from quantum mechanical simulations of various types of noncovalent interactions, which are extremely important for the structure and functions of biomolecules and materials.

A new sort of noncovalent interaction is identified. This new sort of interaction originates from a direct interaction …

A Comparison Of Antlions, Bees, Darkling Beetles And Velvet Ants Across Sand Dune And Non-Sand Dune Habitats At Ash Meadows National Wildlife Refuge, Nicole F. Boehme

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Ash Meadows National Wildlife Refuge (AMNWR) supports nearly 30 organisms found nowhere else in the world. Most of these species are aquatic, dwelling in more than 50 seeps and springs within the over 24,000 acres of the refuge. Much of the research at AMNWR has centered on these unique and abundant springfed pools across the desert landscape. Many of the terrestrial habitats and species at the refuge have not been as well studied. In 2008, Bio-West, Inc. in Logan, Utah was contracted to inventory the terrestrial organisms present on the refuge. To investigate the terrestrial invertebrate fauna, with special interest …

Modeling To Improve Vegetation-Based Wetland Biological Assessment, Robin C. Jones

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

To meet the requirements of the Clean Water Act (1972), natural resource managers need to be able to detect biological degradation in wetland ecosystems. Biological indices are commonly used by managers to assess wetland biological condition. The accuracy and precision of wetland condition assessments are directly related to the performance of these indices, and biological index performance is thought to be related to how well an index controls for the effects of environmental attributes on biological assemblages. Many plant-based biological indices control for environmental and biological variation through the use of classification schemes that are based on geographic location and …

Bark Beetle-Induced Changes To Crown Fuel Flammability And Crown Fire Potential, Wesley G. Page

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Recent outbreaks of aggressive tree-killing bark beetles, including mountain pine beetle in lodgepole pine forests and spruce beetle in Engelmann spruce forests, have recently affected vast areas across western North America. The high levels of tree mortality associated with these outbreaks have raised concerns amongst fire managers and wildland firefighters about the possible effects on fire behavior potential, particularly crown fire potential, as crown fires (fires that consume part or all of tree crowns) hinder the ability of firefighters to conduct safe and effective fire suppression operations. The purpose of this research was to measure and characterize the changes in …

A Quantitative Approach To The Development Of Ecological Sites And State-And-Transition Models, Matthew W. Van Scoyoc

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Changes in land-use and climate can trigger changes in ecosystem conditions and may be driving ecosystems toward undesired “states” that provide inadequate ecosystem services. If these changes are drastic enough, energy intensive restoration programs are necessary to restore ecosystems to previous states. Landscape classification systems based on “ecological potential” offer a robust framework to evaluate and manage ecosystems. The ecological site concept is one such landscape classification system that has been developed by the USDA Natural Resources Conservation Service (NRCS) and describes ecosystems and ecosystem dynamics relative to “reference conditions” and response to disturbance. Ecological sites have gained popularity with …

Systematics And Behavioral Evolution Of Spider Wasps (Hymenoptera: Pompilidae), Cecilia Waichert Monteiro

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Spider wasps form a diverse and widespread group of stinging wasps. Although all Pompilidae have similar life history characteristics, there is considerable variation in nesting behavior modes and, thus, this family could be useful for learning about the evolution of nesting behavior in insects. The nesting behavior of many species is well known, the family is monophyletic and easily recognized, and certain species have some degree of pre-sociality, i.e., communal nesting. All these factors suggest that the Pompilidae are an important model group for understanding mechanisms and patterns of behavioral evolution.

Pompilidae, however, are rarely studied and their research potential …

Characterization Of Lactose Esters For Their Antimicrobial And Emulsification Properties, Guneev Sandhu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Sucrose esters have an established use in food industry as emulsifiers. Two novel lactose esters (lactose monodecanoate and lactose monomyristate) were synthesized and studied for their antimicrobial and emulsification properties. Lactose is a byproduct in cheese production and is an inexpensive carbohydrate source.

The antimicrobial activity of lactose monodecanoate (LMD) and lactose monomyristate (LMM) was tested against the growth of seven different bacteria. Both esters, when dissolved in dimethoxy sulfoxide (DMSO), proved bactericidal against Bacillus cereus, Mycobacteria KMS and Streptococcus suis. LMM/DMSO was bactericidal against B. cereus at concentrations between 1 and 3 mg/ml. LMM/DMSO was bactericidal against …

Synthesizing Research And Education: Ecology And Genetics Of Independent Fern Gametophytes And Teaching Science Inquiry And Content Through Simulations, Aaron M. Duffy

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The mission statements of Utah State University and the Department of Biology, as well as the requirements of funding agencies like the National Science Foundation encourage an integration of teaching and research. I have attempted to achieve that in my dissertation work by using tools I originally created to support and inform my biological research projects to teach science content and inquiry to middle school and undergraduate students.

Chapter 2 of this dissertation reports the results of surveys for Hymenophyllum wrightii, a fern with independent gametophyte populations in the Pacific Northwest, which improved our understanding of the range, distribution, …

Nutrition And Genes Associated With Orofacial Cleft Birth Defects In Utah, Huong Dieu Meeks

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Orofacial clefts (OFCs) are facial malformations that happen during early pregnancy and have a complex and heterogeneous etiology, involving both genetic and environmental risk factors. This project examined the association between maternal nutrition, folate-related biomarkers, candidate genes involved in one-carbon metabolism (OCM), and OFCs in order to achieve more comprehensive knowledge of how nutrition and genetics influence OFC risk. All studies performed in this project used the data collected in the Utah Child and Family Health Study (UCFHS) and the Johns Hopkins International Cleft Consortium.

Neither maternal periconceptional multivitamin use nor healthy dietary pattern score alone was individually associated with …

Advancing Digital Soil Mapping And Assessment In Arid Landscapes, Colby W. Brungard

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Soil information is required for arid and semi-arid land management decisions such as permitting livestock grazing or planning vegetation restoration projects. However, traditional soil mapping methods may not provide adequate soil information, because the scale of mapping often requires dissimilar soils to be grouped together and there are no estimates of map uncertainty. Traditional methods are also often too costly or impractical to implement in large, remote, public arid and semi-arid rangelands. Digital soil mapping (DSM) may be able to overcome these limitations. Digital soil mapping is the creation of pixel-based soil maps using quantitative statistical models that relate easily …

Stem Development, Seeding Rate, And Establishment Of Birdsfoot Trefoil (Lotus Corniculatus) For Organic, Grazing-Based Dairies, Sara Hunt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Birdsfoot trefoil (BFT, Lotus corniculatus L.) is a non-bloating, productive forage legume well suited to grazing-based ruminant production. This thesis presents three studies conducted in the Mountain West applicable to organic management and cultivation of BFT. The first is an analysis of lignification in BFT stems that supports recommendations to harvest BFT at approximately 6 weeks of regrowth, or early bloom. Lignification decreases digestibility and is correlated with high shear force required for grazing animals to break BFT stems. The process of stem lignification was observed by harvesting increasingly mature stems; cutting thin sections of the sixth stem internode, which …

Habitat Characteristics Of Mexican Spotted Owls (Strix Occidentalis Lucida) In The Canyonlands Of Southern Utah, Leah R. Lewis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Mexican Spotted Owls are considered a threatened species by the US Fish and Wildlife Service. Therefore, they must be properly managed and protected by federal and state agencies. In this study I explored the habitat characteristics used by Mexican Spotted Owls in the canyonlands region of southern Utah. I spent three summer field seasons (May-September) from 2010 – 2013 locating Mexican Spotted Owl sites and measuring vegetative and geologic features at these sites. I found that canyon width and very tall vegetation influenced Mexican Spotted Owl presence, suggesting that these owls prefer narrow canyons that are vegetated with trees.

Based …

Inhibition Of L. Monocytogenes Growth In Dairy Products With Lactose Monolaurate, Yao Chen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Foodborne illness is a very severe problem, and it is now a serious issue throughout the world. Within the 5 pathogens that cause more than 90 percent of foodborne illnesses, Listeria monocytogenes ranks the third. L. monocytogenes causes the highest death rate among all foodborne pathogens, and it represents high risks to pregnant women, fetuses and people with weak immune systems. Therefore, inhibition of Listeria in food becomes a relevant topic in food industry and scientific field nowadays.

Adding antibacterial agents into food products is considered as an effective method to inhibit Listeria growth. My research was focused on characterization …

The Functional Role Of Cd36 Involved In Fatty Acid Transduction, Han Xu

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

As one of the most epidemic health concerns in the world, obesity has become a widespread health issue especially for the developed world. It is related to various health conditions including heart disease, type 2 diabetes and certain types of cancer. It is also quite costly. In United States alone, the medical cost of obesity in 2008 was estimated to be $147 billion. Many underlying mechanisms of obesity have been studied in the past few decades. However, the most prevalent cause appears to be simply an imbalance of energy intake and expenditure, resulting in the accumulation of body fat. On …

Electron Transfer And Substrate Reduction In Nitrogenase, Karamatullah Danyal

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The reduction of nitrogen to ammonia by the industrial Haber-Bosch process is considered one of the major scientific breakthroughs of the last century. It is considered to be responsible for approximately one third of the world's current population. This growth over the past 50 or so years accompanied by the changes in dietary habits due to economic growth have markedly increased the demand for fixed nitrogen in the form of fertilizer. The Haber-Bosch process and biological nitrogen fixation has been able to fulfil this demand. However, this industrial process is costly due to its high temperature and pressure requirements. Every …

Movement And Habitat Use Of Bonneville Cutthroat Trout (Oncorhynchus Clarki Utah): A Case Study In The Temple Fork Watershed, Ryan L. Lokteff

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Movement patterns and habitat use of Bonneville cutthroat trout (Oncorhynchus clarki Utah) in tributaries of the Logan River watershed are greatly affected by habitat alterations created by North American Beaver (Castor canadensis). Evaluation of cutthroat trout habitat use in these watersheds is also complicated by biotic interactions with invasive brown trout (Salmo trutta) and brook trout (Salvelinus fontinalis). My objectives in this thesis were to 1.) Evaluate the passage of beaver dams by each trout species in the Temple Fork watershed and 2.) Evaluate the habitat use of cutthroat trout in the presence …