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Life Sciences

University at Albany, State University of New York

Theses/Dissertations

2020

Gene expression

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A Gene Expression Profile Associated With Successful Cns Axon Regeneration In Xenopus Laevis, Jamie L. Belrose Dec 2020

A Gene Expression Profile Associated With Successful Cns Axon Regeneration In Xenopus Laevis, Jamie L. Belrose

Legacy Theses & Dissertations (2009 - 2024)

Background: The South African claw-toed frog, Xenopus laevis, is uniquely suited for studying differences between regenerative and non-regenerative responses to CNS injury within the same organism, because some CNS neurons (e.g., retinal ganglion cells after optic nerve crush (ONC)) regenerate axons throughout life, whereas others (e.g., hindbrain neurons after spinal cord injury (SCI)) lose this capacity as tadpoles metamorphose into frogs. Tissues from these CNS regions (frog ONC eye, tadpole SCI hindbrain, frog SCI hindbrain) were used in a three-way RNA-seq study of axotomized CNS axons to identify potential core gene expression programs for successful CNS axon regeneration.


The Role Of Progesterone Receptor In The Postnatal Development Of The Dentate Gyrus And Episodic-Like Memory, Andrew James Newell Jan 2020

The Role Of Progesterone Receptor In The Postnatal Development Of The Dentate Gyrus And Episodic-Like Memory, Andrew James Newell

Legacy Theses & Dissertations (2009 - 2024)

The hippocampus is a critical structure for the encoding and retrieval of declarative memories in humans, including episodic-memories. In rodents the steroid hormone receptor progesterone receptor (PR) is expressed in the dentate gyrus (DG) of the hippocampus during the postnatal period, a key stage in development of DG cytoarchitecture and connectivity. During the first postnatal week, the main cortical input to the hippocampal circuit, the perforant path, innervates the molecular layer (MOL) of the DG and forms temporary initial synaptic connections with pioneer neurons. By the third postnatal week, long-term synapses have been established with granule cells, the principle neurons …


The Guardian Of The Genome : Regulation Of The Enhancer Networks Governing The P53-Mediated Stress Response, Allison Catizone Jan 2020

The Guardian Of The Genome : Regulation Of The Enhancer Networks Governing The P53-Mediated Stress Response, Allison Catizone

Legacy Theses & Dissertations (2009 - 2024)

After fertilization in vertebrates, cells work to build organs, tissues and begin to rapidly differentiate and proliferate. This process is the orchestration of finely tuned signals and perfectly timed gene expression patterns. The first step in gene expression, transcription, is governed by proteins known as transcription factors (TF). TFs are responsible for binding to DNA, altering chromatin structure, and driving activation of other genes based on the organism’s needs. Once the process of development is complete, organisms shift their resources to maintaining homeostasis. Humans regularly encounter outside stressors such as UV radiation, pollution, allergens, and drugs. Cells also accumulate mutations …


Group Ii Introns : Evolution, Structure And Function, Xiaolong Dong Jan 2020

Group Ii Introns : Evolution, Structure And Function, Xiaolong Dong

Legacy Theses & Dissertations (2009 - 2024)

Group II introns are mobile, self-splicing ribozymes found in bacteria, archaea and eukaryotic organelles. They are widely believed to be the progenitors of the eukaryotic spliceosomal introns and retroelements. Yet many structural and evolutionary aspects of group II introns remain elusive. Indeed, while group II introns are the putative forerunners of spliceosomal introns in eukaryotes, they are notably absent in the nuclear genomes and a large portion of prokaryotes. Furthermore, although the architecture of a post-catalytic group II intron holoenzyme containing both the RNA and the bound intron encoded protein (IEP) has been solved by cryo-electron microscopy (cryo-EM), the interactions …