Digital Commons Network^™

The Role Of Fto, A Human Rna Demethylase In Perennial Grass Development And Abiotic Stress Responses, Andrew Fiorentino, Qian Hu, Xiaotong Chen, Zhaohui Chen

Honors College Theses

The integration of the human fat mass and obesity associated (FTO) gene into turfgrass is a novel approach at improving cell proliferation and abiotic stress resistance. The FTO protein is an RNA demethylase responsible for epigenetic regulation of the genome. In related rice, the gene is associated with increased crop yield, tiller number, and aerial biomass. It is proposed to work via demethylation of repeat RNA associated with chromatin remodeling, causing widespread transcriptional activation. In this study, the feasibility of using FTO for plant trait modification in perennial grasses is being investigated. Potentially transformed embryogenic calli of creeping bentgrass with …

Investigating The Role Of Cnag_05113 In The Carnitine Biosynthesis Pathway In Cryptococcus Neoformans., Jasmine Meltzer, Rodrigo Catalan-Hurtado, Perry Kezh, Kerry Smith

Honors College Theses

Cryptococcus neoformans, the leading cause of fungal meningitis, is a fungal pathogen that causes severe infection of the central nervous system in patients with compromised immune systems, typically caused by HIV/AIDS. C. neoformans infections are present in developed countries including the United States, but most fatalities occur in sub-Saharan Africa where antiretroviral therapy, the treatment for HIV/AIDS, is less accessible. Current treatments for severe cryptococcal infections are extensive and outdated. There is a critical need for an improved understanding of the fungus and new targeted therapies. Our goal is to identify metabolic pathways important to the survival of C. …

Nigella Sative As An Antibiotic Alternative To Promote Growth And Enhance Health Of Broilers Challenged With Eimeria Maxima And Clostridium Perfringens, Vishal Manjunatha, Julian E. Nixon, Greg F. Mathis, Brett S. Lumpkins, Zeynep B. Guzel-Seydim, Atif C. Seydim, Annel K. Greene, Xiuping Jiang

Publications

The poultry industry has significant coccidiosis and necrotic enteritis (NE) challenges, leading to high mortality and unacceptable growth without antibiotic treatment. This research explored supplementing Nigella sativa (black cumin) seed oil in poultry feed to mitigate coccidiosis and prevent or lessen NE in broilers. In vivo studies consisted of 384 and 320 Cobb 500 male broiler chicks distributed in a randomized complete block experimental design for trials 1 and 2, respectively. The first trial compared 3 concentrations (1, 2, and 5 mL/kg) of black cumin seed oil (BCSO), and trial 2 compared 2 concentrations (2 and 5 mL/kg) BCSO, with …

Immediate Response Of Bats To Prescribed Fire And Impact Of Experiences On Women's Self-Image In Natural Resources Professions, Zebria Hicks

All Theses

To inform use of prescribed fire management practice in the southeastern US, we studied its impact on bats, which are important and at-risk species. We evaluated if prescribed fire had a positive, neutral, or negative effect on bat activity in the two weeks following the burns. We recorded bat activity after prescribed burns in February and March 2022 in northwestern South Carolina in select hardwood and pine stands and control sites ≥ 500 m from burn boundaries. We measured insect abundance, canopy cover, basal area, and understory density at each site. We recorded 687 passes during our 45-day study period. …

Integrating Omim And Intact Data For The Analysis Of Gene-Phenotype Interactions In Complex Diseases: A Linux-Based Computational Tool For Network Analysis, Devin Keane

All Theses

The field of genetics is constantly evolving. New advances in bioinformatics and computational approaches are leading to exciting new developments in our ability to treat and prevent diseases. Computational genetics provides valuable insights into the complex mechanisms and layers of biological communication that shape an organism's phenotype. Understanding these mechanisms is critical to advancing human health.

The study of diseases in genetics requires a comprehensive understanding of the interactions between various biological processes, including gene expression, protein synthesis, RNA, metabolism, and cell-cell communication. To effectively address the root causes of such diseases, multi-disciplinary approaches that integrate information from different levels …

Disinfectant Efficacy Against Sars-Cov-2 Surrogates, Bovine Coronavirus And Human Coronavirus Oc43, On Hard And Soft Non-Porous Surfaces, Breanna Kimbrell

All Theses

The novel human coronavirus (HCoV), severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), emerged from Wuhan, China in the latter part of 2019. The rapid spread of SARS-CoV-2 amid the most recent COVID-19 pandemic forced countless foodservice establishments (FSEs) across the United States to close, taking a tremendous toll on the foodservice industry. Although primarily transmitted person-to-person, previous studies indicate that the duration of SARS-CoV-2 survival on different environmental surfaces provides adequate time for secondary transmission to occur. To prevent the further spread of SARS-CoV-2, effective disinfection of surfaces in FSEs is necessary. While disinfectants approved for use against SARS-CoV-2 are …

Influence Of Potassium Fertilizer Application Timing On Cotton Production As Related To Soil Potassium On U.S. Coastal Plain Soils, Shruthy Suresh Kumar

All Theses

Understanding soil K dynamics is highly significant in cotton production owing to its prominent role in cotton fiber quality. About 31 % of cotton production in the U.S. is concentrated in SE states, with coastal plain soils having low innate K availability. Crop fertilizer-K recommendations are primarily made worldwide and across the U.S. using pre-plant STK concentrations. A literature review on cotton K studies suggests that fertilizer-K recommendations based on pre-plant STK concentrations alone need fine-tuning to meet the increasing K demands in modern cultivars, variations in crop K requirement patterns, and varied soil K supplying capacity. Studies have been …

Prey Preference Of Chrysoperla Rufilabris (Burmeister) (Neuroptera: Chrysopidae) For Three Common Pest Species Of Greenhouse Crops, Caitlin Silva

All Theses

Chrysoperla rufilabris (Burmeister) (Neuroptera: Chrysopidae) larvae are voracious generalist predators and important biological control agents on greenhouse crops. This study investigated the prey preference of second-instar C. rufilabris for three common greenhouse pests, namely the twospotted spider mite, Tetranychus urticae Koch (Acari: Tetranychidae), the Madeira mealybug, Phenacoccus madeirensis Green (Hemiptera: Pseudococcidae), and the melon aphid, Aphis gossypii Glover (Hemiptera: Aphididae). This study also investigated the influence of prey density ratios on the preference of C. rufilabris larvae for T. urticae and A. gossypii. Prey species preference was evaluated in no-choice, two-choice, and all-choice laboratory bioassays. In the no-choice bioassays, …

Generation And Characterization Of A Multi-Functional Panel Of Monoclonal Antibodies For Sars-Cov-2 Research And Treatment, Lila D. Patterson

All Theses

The Coronavirus disease 2019 (COVID19) pandemic caused by SARS-CoV-2 is an ongoing threat to global public health. To this end, intense efforts are underway to develop reagents to aid in diagnostics, enhance preventative measures, and provide therapeutics for managing COVID-19. The recent emergence of SARS-CoV-2 Omicron strains with enhanced transmissibility, altered antigenicity, and significant escape of existing monoclonal antibodies and vaccines underlines the importance of the continued development of such agents. The SARS-CoV-2 spike protein and its receptor binding domain (RBD) are critical to viral attachment and host cell entry and are primary targets for antibodies elicited from both vaccination …

Laser Inscribed Graphene Aptasensor For Detection Of Apple Stem Pitting Virus, Yifan Tang

All Theses

Apple stem pitting virus (ASPV) is a latent RNA virus that could cause significant loss to apple production; early-stage field diagnosis could reduce the economic loss caused by ASPV infection. Biosensor is a promising user-friendly detection tool that could transduce biological or chemical interactions into electric signals. Among various types of biosensors, aptasensor, which use aptamers as recognition elements show potential as a high throughput, in-field test. The goal of this thesis is to develop an electrochemical aptasensor testing system for ASPV detection. The quality control study of laser inscribed graphene (LIG) based working electrode of the biosensor was conducted …

Changes In Energy Metabolism Induced By Pfos And Dietary Oxylipins, William Evans

All Theses

Perfluorooctanesulfonate (PFOS), an emerging environmental toxicant in addition to 9- hydroxyoctadecadienoic acid (9-HODE) and 9-hydroxyoctadecatrienoic acid (9-HOTrE), endogenously produced oxylipins from polyunsaturated fatty acids (PUFAs) by Cytochrome P450 2B6 (CYP2B6) have been recently associated with hepatic steatosis and peroxisome proliferator- activated receptor signaling by data produced from our laboratory and others. Given the importance of mitochondrial energy metabolism in the maintenance of lipid homeostasis, an array of extracellular flux assays was performed using HepG2 cells to test for the ability of these compounds to disrupt overall mitochondrial activity and respiration associated with fatty acid oxidation and glycolysis specifically. PFOS and …

Assesment Of Structure, Function, And Microevolutionary Dynamics Of Extrachromosomal Circular Dna In Chinese Hamster Ovary Cells, Dylan Chitwood

All Dissertations

Chinese hamster ovary (CHO) cell lines are among the most popular expression hosts used in biopharmaceutical manufacturing due to relative ease of culture, capacity to perform human-like post-translational modifications, and non-susceptibility to viruses. However, the intrinsic plasticity of the CHO genome can lead to undesired genetic rearrangements, phenotypic shifts, reduced product quality, and early culture termination that prevents continuous biomanufacturing. A characteristic of plastic and unstable genomes that is poorly understood in CHO cells is extrachromosomal circular DNA (eccDNA). EccDNAs are focal amplifications of the genome that reside in the extranuclear space. These plasmid-like entities are structurally complex and are …

Precision Management Of Inputs In Cotton And Soybean Production In South Carolina, Kyle Smith

All Theses

The adoption of precision agriculture technologies and developing specific product use recommendations in cotton and soybean production could help farmers reduce input costs and optimize overall farm profitability. The objectives of this research were to evaluate whether or not the use of variable rate seeding in cotton could increase profitability and to determine the rainfast interval of commonly used insecticides in cotton and soybean production. The first trial, variable rate seeding in cotton, was implemented at the Edisto Research and Education Center near Blackville, SC across five years to evaluate variable rate seeding in cotton. Results from trials in South …

Hibernating Tricolored Bats At A Southeastern Recreation Site: Microsite Use And Public Perceptions, Rebecca Brown

All Theses

High bat mortality from white-nose syndrome (WNS) has increased the need to manage hibernation sites. Management decisions should be based on science, and when sites are accessible to the public, also need to consider human dimensions. We used Stumphouse Tunnel, a recreation site and tricolored bat (Perimyotis subflavus) hibernaculum in northwestern South Carolina, as a case study to understand potential conflicts between conservation and recreation. The population declined by 90% after the arrival of white-nose syndrome (WNS), followed by stabilization and slight increases. Because the increase was associated with more bats roosting in the publicly accessible section, a potential …

Meta-Analysis Of The Effects Of Endophytes And Their Secondary Metabolites On Herbivory From Insects, Derrick Taylor

All Theses

Endophyte-infected plants have reduced the level of herbivory. The defense to herbivory can vary due to the metabolites in the plant and the method of feeding from the pest. Secondary metabolites produced by the endophytes are mainly alkaloids. The associations between endophytes and some alkaloid groups are studied in greater detail. The lack of research of certain alkaloid groups ultimately means that some alkaloids had more data that could be analyzed. As a result, the alkaloid groups were not evenly represented in the meta-analysis. The meta-analysis analyzed the relative effectiveness of the metabolites or endophytes in each of the articles …

Development Of A Novel Fluorescent Reporter Baculovirus Vector For Testing Promoters In Lepidopterans, Daniel Howard

All Theses

Testing gene expression patterns is an important process in learning more about an organism. The standard methods of rtPCR and RNASeq provide highly detailed data on specific expression patterns, but can be resource consuming if many different samples including genes or organisms must be tested. A potential alternative for studying expression is the use of a reporter system carried by a vector system that encodes fluorescent proteins under the control of promoters of interest. Many lepidopterans (moths) are pestiferous and better understanding of gene expression levels in lepidopterans, both endogenous and exogenous including from their viruses, would be beneficial. Baculoviruses …

Acetate Metabolism In The Fungal Pathogen Cryptococcus Neoformans, Oly Ahmed

All Dissertations

Cryptococcus neoformans is an environmental basidiomycetous fungus with a worldwide distribution and a wide range of habitats. Inhalation of the desiccated yeasts or spores of C. neoformans often leads to opportunistic pulmonary infections in immunocompromised individuals, and in severe cases causes lethal meningitis following hematogenous dissemination. During infection, depending on the tissue and disease state, the invading fungi experience a range of nutrient microenvironments within the host body. As a result, rapid metabolic adaptations geared towards efficient utilization of carbon sources alternative to glucose become one of the prime determinants of survival and growth for the pathogen. Incidentally, cryptococcal infection …

Diagnosis Of Urinary Tract Infections And Rapid Molecular Characterization Of Antibiotic Resistance, Mohammed Harris

All Dissertations

Urinary tract infections (UTIs) are one of the most common infectious clinical entities in both community and hospital settings. They have a broad range of clinical severity yet inflict large epidemiological burden of morbidity and mortality on patients and the healthcare system with billions of dollars in cost of treatment. Understanding what methods are optimal for diagnosing UTIs are critical to mitigate the marked impact and cost of these infections.

Chapter 1 and 2 in this work surveys the broad array of diagnostic modalities for UTIs and highlights their advantages and limitations in the context of the current standard of …

An Agricultural Literacy Assessment Of Social Studies Teachers In South Carolina, Walker Reid

All Theses

Studies in the career development of youth identify middle school as the optimum time for career exploration, as it advances young adolescents’ self-awareness, knowledge of prospective careers, and goal setting. In South Carolina (SC), only 5% (13 of 248) of public middle schools provide agricultural education. The purpose of this study is to measure any increase in agricultural awareness and literacy of South Carolina 8^th-grade social studies teachers participating in a five-day study tour (SOCIAL tour) through mixed method procedures. A pre and post-tour survey given to participants indicated a significant increase in knowledge and perception of agriculture …

Winter Cover Crop Performance In The Southern Piedmont Region Of South Carolina, Payton Davis

All Theses

Cover crops (CC) offer in-field and environmental benefits when integrated into cropping systems. Low CC adoption in the southern Piedmont of South Carolina is partially due to the lack of information on CC performance and benefits within the region. To address this, eight winter CC and a fallow/pigweed treatment were investigated for their influence on soil temperature, volumetric water content (VWC), percent cover, biomass, and the occurrence of soil water repellency (SWR). A randomized complete block design experiment was conducted in the fall and winter of 2021-2022 (EXP A) and repeated in 2022-2023 (EXP B). Cover crops minimally influenced soil …

Assessing Recreational User Impacts, Motivations, And Knowledge On The Spread Of Invasive Plant Species In A Managed, Multiple-Use Forest Ecosystem, Crystal Strickland

All Theses

The spread of invasive plants is ecologically and economically detrimental to native ecosystems, animals, and humans. Recreation is one factor that may influence plant dispersal. The impacts of recreation on invasive plant spread are multifaceted and include the physical act of spreading and transporting seeds and vegetation to new areas on clothes, pets, and equipment, as well as the social aspect of outreach and education. Therefore, I used a multifaceted approach to assess the impact of human trafficked areas where recreational activities frequently occur on four known invasive plant species in the Clemson Experimental Forest (CEF) in South Carolina: Microstegium …

Inhibitors Of Human Eno2 Are Potent Anti-Trypanosomal Agents, Danielle Lavigne

Honors College Theses

Kinetoplastid parasite infections remain a global health burden. Here, we have characterized inhibitors of an essential Trypanosoma brucei glycolytic enzyme, enolase (TbENO). We anticipate TbENO inhibitors will be potent anti-trypanosomals, as T. brucei relies on glycolysis for ATP production in the blood of infected mammals. Additionally, the phosphonate enolase inhibitors being considered are well-tolerated in mammals, suggesting their potential in developing novel therapeutics for kinetoplastid infections. TbENO was cloned into the bacterial expression vector, pQE-30, and the heterologously-expressed protein was purified by nickel affinity and assayed in a coupled enzyme assay. Enzyme activity paralleled the abundance …

Identification Of Sva-Mediated 3’ And 5’ Transductions In Human Genome Sequences, Emily C. Golba

Honors College Theses

Transposable elements (TEs) are sequences of DNA that can move, or transpose, within a genome. Retrotransposons are TEs that propagate via a “copy and paste” mechanism where the elements are transposed to a new genomic location via an RNA intermediate. Short interspersed element (SINE)-VNTR-Alu elements (SVAs) are non-autonomous retrotransposons that use long interspersed element 1 proteins to mobilize. SVAs are currently active in the human genome and often are characterized by the mobilization of sequences adjacent to the 3’ and 5’ ends of insertions, known as transduction events (TDs). TDs were a focus of this study due to their contribution …

The Influence Of Diet Recommendations On Exercise Performance, Specifically Single And Multi-Nutrient Effects, Samuel Maurer

All Theses

Objectives: The main question in this study was “Do nutrients present within the MyPlate and Paleo dietary patterns affect exercise parameters in a positive way?” An auxiliary question was “Do nutrients present within these two diets reduce comorbidities of chronic diseases?”

Methods: This study analyzed secondary data collected from a previous diet and exercise study. Dietary records were analyzed for correlations between nutrient intake and exercise performance in both diet groups. Further stratification by VO2 peak performance was done to analyze nutrient intake differences between high and low-performing individuals.

Results: The MyPlate eating pattern increased body fat percentage, blood pressure, …

Growth, Mortality, And Movement Of Endemic Bartram's Bass And Invasive Alabama Bass In Upper Savannah River Basin Tributaries, Tyler Zumwalt

All Theses

Bartram’s Bass are an endemic to the Upper Savannah River basin in North Carolina, South Carolina, and Georgia. Bartram’s Bass are facing many risks, primary among them being hybridization with nonnative Alabama Bass. More recently, nonnative Alabama Bass and their hybrid congeners have been observed moving from reservoirs into tributaries where the remaining Bartram’s Bass populations exist. Thus, for Chapter 1 we sought to better understand the threat of nonnative gene spreading in tributary systems. To do this, we 1) quantified the movement of pure Alabama Bass, Bartram’s Bass, and their hybrids, 2) assessed correlations between movement and abiotic variables, …

Mapping The Sos204 ( Suppressor Of Sunn-1 204) Gene In Medicago Truncatula, Rakshya Shah

All Theses

Nodules in legumes allow the plant to form a symbiotic interaction with bacteria, providing access to the inert N₂ in the atmosphere. The Autoregulation of Nodulation Pathway (AON), a negative regulatory feedback mechanism, is a long-distance signaling system which controls the nodule numbers formed on roots, helping the plant conserve energy by not hosting bacterial symbionts beyond those needed by the plant. A forward genetic screen of the EMS mutagenized supernodulating sunn-1 mutant, a weak allele of SUNN in Medicago truncatula, identified 6 lines of heritable suppressor mutants that reduced the nodulating phenotype from supernodulating to wild-type. We used …

Role Of Salinity In Perfluorooctane Sulfonate (Pfos) Bioconcentration Between Aquatic Species And The Differential Regulation Of Transporters In Fundulus Heteroclitus, Tyler Davis

All Theses

Perfluorooctane sulfonate (PFOS) is a persistent organic pollutant that is known for its surfactant properties and its resistance to degradation. The persistence and lipophilicity of PFOS in surface waters have led to its bioaccumulation in fish, which in turn leads to its accumulation and toxic effects in humans that consume fish. PFOS is also hypothesized to perturb reproduction and survival of low and mid-trophic level zooplankton species such as Daphnia magna that are food for multiple fish species. In this study, a 21-day D. magna chronic toxicity test was performed using 1,10, 100, 1000, and 5000 ppb of PFOS to …

Comparing The Economic Efficiency Of Payment Structures To Subsidize On-Farm Greenhouse Gas Abatement In Iowa, David Mansfield

All Theses

Abating greenhouse gas (GHG) emissions in the agricultural sector can help
combat climate change and meet the goals of the 2015 Paris Climate Agree-
ment. The agricultural sector can sequester soil organic carbon and, by adopt-
ing conservation-driven land-use decisions, such as reducing or stopping tillage,
increase carbon storage in soil and reduce nitrous oxide (N2O) emissions.
This thesis will compare the cost of achieving different levels of GHG emis-
sions reduction through payments based on: 1) region averages for GHG emis-
sions by crop and practice, without considering additionality, 2) region averages
for GHG emissions by crop and practice …

Attenuation Of Human Dmc1 Recombination Activities By Substitution Of A Conserved Residue, Melody Hayman

All Theses

Unrepaired DNA double strand breaks (DSB) are detrimental to the viability of the cell. The repair of DSBs can occur by a process called homologous recombination (HR). HR is used whenever the cell has a homologous template in the way of a homologous chromosome available. The process of HR during mitosis is different from meiotic HR. To initiate meiotic recombination, DSBs are formed and processed to allow proper chromosome segregation and ultimately genetic variation. Meiotic HR is mediated by the meiosis specific recombinase, DMC1. The DMC1 recombinase binds to the 3’ end of a newly resected DSB forming a nucleoprotein …

Rabbit Anatomy: A Brief Photographic Atlas And Dissection Guide - Part Ii: Cardiovascular System (Third Edition), Soma Mukhopadhyay, Lisa Ruggiero Wagner

Rabbit Anatomy: A Brief Photographic Atlas and Dissection Guide

No abstract provided.