Digital Commons Network^™

Effects Of Roadways On Seasonal Movement Strategies And Mate Location Success In An Imperiled Pit Viper (Crotalus Horridus), Elizabeth J. Noble

Graduate Research Showcase

A detailed understanding of animal movement behavior is fundamental to effective conservation and management. Within populations, a diversity of movement strategies can be displayed in search of critical resources, and these strategies are influenced by multiple interacting factors related to individuals and the environment. Mating partners are one critical resource that often serves as a prominent selective force shaping movement during mating seasons. For many large-bodied snakes, such as pit vipers (Viperidae: Crotalinae), male mate- searching movements are the primary determinant of mate location success. During this time, males incur significant risks associated with elevated movement. In an increasingly human- …

Rescape: Transforming Coral-Reefscape Images For Quantitative Analysis, Zachary Ferris, Eraldo Ribeiro, Tomofumi Nagata, Robert Van Woesik

Ocean Engineering and Marine Sciences Faculty Publications

Ever since the first image of a coral reef was captured in 1885, people worldwide have been accumulating images of coral reefscapes that document the historic conditions of reefs. However, these innumerable reefscape images suffer from perspective distortion, which reduces the apparent size of distant taxa, rendering the images unusable for quantitative analysis of reef conditions. Here we solve this century-long distortion problem by developing a novel computer-vision algorithm, ReScape, which removes the perspective distortion from reefscape images by transforming them into top-down views, making them usable for quantitative analysis of reef conditions. In doing so, we demonstrate the …

Synopsis Of The Genus Cerabilia, André Larochelle, Marie-Claude Larivière

Insecta Mundi

The genus Cerabilia Laporte de Castelnau (Carabidae: Abacetini) is revised for New Zealand. Thirteen species are recognized.

Seven species are described as new: Cerabilia (Cerabilia) cordata Larochelle and Larivière new species, Cerabilia (Cerabilia) kaihoka Larochelle and Larivière new species, Cerabilia (Cerabilia) laevis Larochelle and Larivière new species, Cerabilia (Cerabilia) motunau Larochelle and Larivière new species, Cerabilia (Cerabilia) rugosa Larochelle and Larivière new species, Cerabilia (Cerabilia) takaka Larochelle and Larivière new species, Cerabilia (Cerabilia) willi Larochelle and Larivière new species. …

Species Richness Of Moths In Parks Surrounded By Varying Levels Of ​Urbanization Around Nashville, Tennessee, Maxwell Stone, Allie Bennett

Science University Research Symposium (SURS)

Moths can act as indicators of environmental wellness due to their pollution sensitivity and the complexity of biodiversity required to support their life cycles. Urbanization can impact the occurrence of moths in protected green spaces. Higher moth species richness was hypothesized to occur in parks surrounded by more rural areas. Three metropolitan parks were chosen in the Nashville area: downtown, within a suburban neighborhood, and in a rural area. Tree canopy cover and degree of impervious surfaces were assessed for each park and surrounding area using iTreeCanopy. Moths were attracted to a white sheet using a mercury vapor bulb, UV …

U.S. History, Science History, Women Scientists, History Of Entomology, Mentoring, Gender In Science, Nature Studies, Ecology, Cornell University, History Of Higher Education, Pat Munday

Interdisciplinary Arts and Sciences Articles

James G. Needham (1868-1958) was a professor of entomology at Cornell University from 1906 to 1936, and an active emeritus for about ten years thereafter. As a professor, mentored many women graduate students at Cornell, a group that included twenty-nine who took doctorates. As a scientist, he was a member of an extensive network that included many more women entomologists. These women were located throughout the United States and Canada. Some had been his students at Cornell, some were colleagues with whom he did fieldwork, and others were young women who, even though students at colleges other than Cornell, worked …

A Foundational Population Genetics Investigation Of The Sexual Systems Of Solanum (Solanaceae) In The Australian Monsoon Tropics Suggests Dioecious Taxa May Benefit From Increased Genetic Admixture Via Obligate Outcrossing, Jason T. Cantley, Ingrid E. Jordon-Thaden, Morgan Roche, Daniel S. Hayes, Stephamie Kate, Christopher T. Martine

Faculty Journal Articles

Solanum section Leptostemonum is an ideal lineage to test the theoretical framework regarding proposed evolutionary benefits of outcrossing sexual systems in comparison to cosexuality. Theoretically, non-cosexual taxa should support more genetic diversity within populations, experience less inbreeding, and have less genetic structure due to a restricted ability to self-fertilize. However, many confounding factors present challenges for a confident inference that inherent differences in sexual systems influence observed genetic patterns among populations. This study provides a foundational baseline of the population genetics of several species of different sexual systems with the aim of generating hypotheses of any factor—including sexual system—that influences …

Smile For The Camera: Patterns Of Mammal Abundance In Great Hill Forest Through Four Years Of Camera Trapping, Alexander Gonatas

Honors Program Theses and Projects

Snapshot USA is a nationwide camera trapping project aiming to determine biodiversity and abundance of animal populations across all 50 states. Since 2019, participants have used camera traps to document wildlife every September and October, coinciding with animal activity patterns and North American academic year starts. Understanding biodiversity through long-term monitoring is an important topic to study, because the knowledge obtained can help track populations and better understand wildlife responses to disturbances. Since Snapshot USA participants use the same methods and trapping season, the information we collect can be directly compared to other Snapshot USA locations. At Great Hill Forest …

Keystone Species Explorer Website, Claire Hutchings

WWU Honors College Senior Projects

This project is an educational resource (in the form of a website) for elementary and middle school students to explore the ecological concept of keystone species. This site has been designed to provide young students with an accessible, engaging introduction to ecology. The website was created with the design platform Wix. This site is going to be a project in continued development, with entries covering content on several keystone species. The first species covered on the site is the North American beaver. Traditionally-rendered illustrations accompany various pages of content. These pages review the biology and behavior of this animal, its …

Cell Volume As A Determinant Of Virus-Mediated Population Growth In Ciliates, Jace Miller, John Paul Delong Phd

Honors Theses

Many protists and other small aquatic organisms consume virus particles, a behavior known as virovory. Some species of protists, such as the ciliate Halteria grandinella, can grow and divide using viruses as their sole food source. Other ciliate species have previously been shown to consume large quantities of viral particles, but it is unclear if they are able to support population growth with viruses alone. Because large ciliates have a higher energy demand, we hypothesize that they will be unable to support population growth on a virus-only diet. We fed nine ciliate species a diet of chloroviruses and found …

Invasive Annual Grasses—Reenvisioning Approaches In A Changing Climate, David Archer, David Toledo, Dana M. Blumenthal, Justin Derner, Usda Ars Burns, Oregon, Kirk Davies, Erik Hamerlynck, Roger Sheley, Pat Clark, Fred Pierson, Charlie Clements, Beth Newingham, Brian Rector, John Gaskin, Carissa L. Wonkka, Kevin Jensen, Tom Monaco, Lance T. Vermeire, Stephen L. Young

United States Department of Agriculture-Agricultural Research Service / University of Nebraska-Lincoln: Faculty Publications

For nearly a century, invasive annual grasses have increasingly impacted terrestrial ecosystems across the western United States. Weather variability associated with climate change and increased atmospheric carbon dioxide (CO2) are making even more difficult the challenges of managing invasive annual grasses. As part of a special issue on climate change impacts on soil and water conservation, the topic of invasive annual grasses is being addressed by scientists at the USDA Agricultural Research Service to emphasize the need for additional research and future studies that build on current knowledge and account for (extreme) changes in abiotic and biotic conditions. Much research …

The World Of Underground Ecology In A Changing Environment, Elsa Abs, Moira Hough

Michigan Tech Publications

This special feature presents state-of-the-art soil ecological science and was sparked following the 2-day long online live event entitled “Ecology Underground” during the Ecological Society of America annual meeting of 2020. Here, we, the co-guest-editors of this special feature, present this body of research in context of the current state of the field. This issue highlights that we are currently in a hot time for microbial research in soil science. Specifically, we find that two themes emerge from this corpus as key next questions to answer to move the field forward. How do microbial processes scale up in space and …

Growth And Survival Of Amphibians Exposed To Road Salt And Glyphosate-Based Herbicide, Jerica Eaton

Mahurin Honors College Capstone Experience/Thesis Projects

Amphibian populations are threatened by increasing levels of environmental pollution resulting from human activities. Areas with mixed land use that include agriculture and urban development experience increased contamination from surface herbicide and road deicer application. Upon entering water sources, these chemicals have the capacity to disrupt the natural dynamics of aquatic ecosystems. This study aimed to evaluate the effects of these contaminants on amphibian populations. I used the spotted salamander (Ambystoma maculatum) as a model, rearing larvae from hatching to metamorphosis. I subjected larvae in each of the treatment groups to varying levels of herbicide and salt concentrations. …

Utilizing Markov Chains To Estimate Allele Progression Through Generations, Ronit Gandhi

Honors Theses

All populations display patterns in allele frequencies over time. Some alleles cease to exist, while some grow to become the norm. These frequencies can shift or stay constant based on the conditions the population lives in. If in Hardy-Weinberg equilibrium, the allele frequencies stay constant. Most populations, however, have bias from environmental factors, sexual preferences, other organisms, etc. We propose a stochastic Markov chain model to study allele progression across generations. In such a model, the allele frequencies in the next generation depend only on the frequencies in the current one.

We use this model to track a recessive allele …

Levels Of Autotrophy And Heterotrophy In Mesophotic Corals Near The End Photic Zone, Amy Carmignani, Veronica Z. Radice, Kathryn M. Mcmahon, Alex I. Holman, Karen Miller, Kliti Grice, Zoe Richards

Biological Sciences Faculty Publications

Mesophotic corals live at ~30-150 m depth and can sustain metabolic processes under light-limited conditions by enhancing autotrophy through specialized photoadaptations or increasing heterotrophic nutrient acquisition. These acclimatory processes are often species-specific, however mesophotic ecosystems are largely unexplored and acclimation limits for most species are unknown. This study examined mesophotic coral ecosystems using a remotely operated vehicle (Ashmore Reef, Western Australia at 40–75m depth) to investigate the trophic ecology of five species of scleractinian coral (from genera Leptoseris, Pachyseris, and Craterastrea) using stable isotope analyses (δ¹³C and δ¹⁵N) of host and symbiont tissues …

Rapidly Changing Range Limits In A Warming World: Critical Data Limitations And Knowledge Gaps For Advancing Understanding Of Mangrove Range Dynamics In The Southeastern Usa, Rémi Bardou, Michael J. Osland, Steven Scyphers, Christine Shepard, Karen E. Aerni, Jahson B. Alemu I, Robert Crimian, Richard H. Day, Nicholas M. Enwright, Laura C. Feher, Sarah L. Gibbs, Kiera O'Donnell, Savannah H. Swinea, Kalaina Thorne, Sarit Truskey, Anna R. Armitage, Ronald Baker, Josh L. Breithaupt, Kyle C. Cavanaugh, Erik S. Yando, A. Randall Hughes, Et Al.

Biological Sciences Faculty Publications

Climate change is altering species’ range limits and transforming ecosystems. For example, warming temperatures are leading to the range expansion of tropical, cold-sensitive species at the expense of their cold-tolerant counterparts. In some temperate and subtropical coastal wetlands, warming winters are enabling mangrove forest encroachment into salt marsh, which is a major regime shift that has significant ecological and societal ramifications. Here, we synthesized existing data and expert knowledge to assess the distribution of mangroves near rapidly changing range limits in the southeastern USA. We used expert elicitation to identify data limitations and highlight knowledge gaps for advancing understanding of …

The Importance Of Winter Dinoflagellate Blooms In Chesapeake Bay— A Missing Link In Bay Productivity, Nicole C. Millette, Sophie Clayton, Margaret R. Mulholland, Leah Gibala-Smith, Michael Lane

OES Faculty Publications

It is widely assumed that phytoplankton abundance and productivity decline during temperate winters because of low irradiance and temperatures. However, winter phytoplankton blooms commonly occur in temperate estuaries, but they are often undocumented because of reduced water quality monitoring in winter. The small body of in situ work that has been done on winter blooms suggests they can be of enormous consequence to ecosystems. However, because monitoring is often reduced or stopped altogether during winter, it is unclear how widespread these blooms are or how long they can last. We analyzed an over 30-year record of monthly phytoplankton monitoring samples …

Corrigendum: Evolution, Ecology, And Zoonotic Transmission Of Betacoronaviruses: A Review, Herbert F. Jelinek, Mira Mousa, Eman Alefishat, Wael Osman, Ian Spence, Dengpan Bu, Samuel F. Feng, Jason Byrd, Paola A. Magni, Shafi Sahibzada, Guan K. Tay, Habiba S. Alsafar

Research outputs 2022 to 2026

In the published article, there was an error in the legend for Figure 1 as published. The figure legend did not indicate that it has been adapted from Plowright et al. (2017). Copyright permission was obtained from Springer Nature to adapt Figure 1 from Plowright et al. (2017). The corrected legend appears below. Figure 1. Zoonotic risk distribution, pathway to spillover, and the multimodal role of the determinants of spillover. The zoonotic risk is demonstrated by the accumulated distribution of reservoir hosts and vectors that play a role in the pathway to spillover. The risk of spillover is determined by …

Our Natural World, Jennifer Mattei

Biology Faculty Publications

It’s nothing earth-shattering to say our natural world gives us everything we need to survive, from the oxygen we breathe and the clean water we drink to that apple you are enjoying with your lunch today. We all know this. However, we sometimes fail to appreciate and act on the converse—if we fail to maintain a well-functioning and resilient natural world our future is literally at risk.

What’s more, our reliance on nature goes deeper than the base physical essentials of air, water and food that are required for life. Our bodies—physically, mentally and emotionally—are healthier for their interaction with …

Occurrence Of Kanamycin-Resistant Bacteria Relative To Anthropogenic Pollution Along Richland Creek In Nashville, Tn​, Jolene Ho Mach, Annie Le, Brandon Torres Ramirez

Science University Research Symposium (SURS)

The overuse of antibiotics has caused an increase in antibiotic-resistant (AR) bacteria, which is a serious public health concern. Previous studies showed a significant correlation between anthropogenic pollution and AR bacteria. This project aims to identify AR bacteria in Richland Creek relative to local anthropogenic pollution. Water samples were collected at four locations along Richland Creek in Nashville, Tennessee. Bacteria resistant to the antibiotic kanamycin were isolated from the water samples, identified to genera using DNA barcoding, and compared among the sites. We expect to see a greater abundance and diversity of kanamycin-resistant bacteria closer to the end than near …

18s-Nemabase: Curated 18s Rrna Database Of Nematode Sequences, Kaitlin Gattoni, Eli M. S. Gendron, Rebeca Sandoval- Ruiz, Abigail Borgemeier, J. Parr Mcqueen, Rachel M. Shepherd, Dieter Slos, Tom Powers, Dorota L. Porazinska

Department of Plant Pathology: Faculty Publications

Nematodes are the most abundant and diverse animals on the planet but lack representation in biodiversity research. This presents a problem for studying nematode diversity, particularly when molecular tools (i.e., barcoding and metabarcoding) rely on well-populated and curated reference databases, which are absent for nematodes. To improve molecular identification and the assessment of nematode diversity, we created and curated an 18S rRNA database specific to nematodes (18S-NemaBase) using sequences sourced from the most recent publicly available 18S rRNA SILVA v138 database. As part of the curation process, taxonomic strings were standardized to contain a fixed number of taxonomic ranks relevant …

18s-Nemabase: Curated 18s Rrna Database Of Nematode Sequences, Kaitlin Gattoni, Eli M. S. Gendron, Rebeca Sandoval- Ruiz, Abigail Borgemeier, J. Parr Mcqueen, Rachel M. Shepherd, Dieter Slos, Tom Powers, Dorota L. Porazinska

Department of Plant Pathology: Faculty Publications

Nematodes are the most abundant and diverse animals on the planet but lack representation in biodiversity research. This presents a problem for studying nematode diversity, particularly when molecular tools (i.e., barcoding and metabarcoding) rely on well-populated and curated reference databases, which are absent for nematodes. To improve molecular identification and the assessment of nematode diversity, we created and curated an 18S rRNA database specific to nematodes (18S-NemaBase) using sequences sourced from the most recent publicly available 18S rRNA SILVA v138 database. As part of the curation process, taxonomic strings were standardized to contain a fixed number of taxonomic ranks relevant …

Writing An Existential Novel: An Environmental And Philosophical Exploration, Julia Whinston

Honors College

Halfway Through the Wood is a creative project guided by the question, does nature have intrinsic ethical, philosophical, and/or spiritual value, or do we project it there? As a subsidiary question, is our relationship with nature akin to our relationship with ourselves? The novel begins with a “man versus nature” conflict, exploring human relationships to land, then moves on to a conversation about self, which ultimately leads to an incredulous/existential discourse about interconnectedness. The novel explores the implications of experiencing grief alongside natural systems, and concludes that enmeshing oneself within a natural system is vital for discovering meaning after experiencing …

Synopsis Of The Tribe Amarotypini In New Zealand (Coleoptera: Carabidae), André Larochelle, Marie-Claude Larivière

Insecta Mundi

The tribe Amarotypini (Coleoptera: Carabidae: Migadopinae) is revised for New Zealand. Three genera and fourteen species are recognized.

Two genera and thirteen species are described as new: Amarophilus Larochelle and Larivière new genus, Amarophilus lomondensis Larochelle and Larivière new species, Amarophilus otagoensis Larochelle and Larivière new species, Amarophilus rotundicollis Larochelle and Larivière new species, Amarophilus wanakensis Larochelle and Larivière new species, Amarotypus fiordlandensis Larochelle and Larivière new species, Amarotypus glasgowensis Larochelle and Larivière new species, Amarotypus murchisonorum Larochelle and Larivière new species, Amarotypus simoninensis Larochelle and Larivière new species, Amarotypus takaheensis …

Assessing The Effects Of Elevation On The Peaks Of Otter Salamander (Plethodon Hubrichti) Using Body Condition Index, Norman Reichenbach, Timothy R. Brophy, Hannah Suber, Elisabeth Russell, Hannah Kinsley, Liam Cusack, Cetia Dawson, Savannah Dunn, Olivia De Araujo

Faculty Publications and Presentations

The Peaks of Otter Salamander (Plethodon hubrichti; POS) is a montane species found at elevations above 442 m within a 117 km2 area of the Blue Ridge Mountains in central Virginia. In allopatric areas (areas without the Eastern Red-backed Salamander, P. cinereus, a known competitor), POS body condition was hypothesized to decline both above and below some optimal elevation. Decreased condition at lower elevations would most likely be due to increased temperatures and lower relative humidities, which may adversely affect the ability of salamanders to forage effectively on vegetation due to desiccation risk. Decreased condition at elevations above …

Nature, Data, And Power: How Hegemonies Shaped This Special Section, A. Kamath, B. Velocci, A. Wesner, N. Chen, Vincent A. Formica, B. Subramaniam, M. Rebolleda-Gómez

Biology Faculty Works

Systems of oppression—racism, colonialism, misogyny, cissexism, ableism, heteronormativity, and more—have long shaped the content and practice of science. But opportunities to reckon with these influences are rarely found within academic science, even though such critiques are well developed in the social sciences and humanities. In this special section, we attempt to bring cross-disciplinary conversations among ecology, evolution, behavior, and genetics on the one hand and critical perspectives from the social sciences and humanities on the other into the pages—and in front of the readers—of a scientific journal. In this introduction to the special section, we recount and reflect on the …

Rethinking Human-Local Wildlife Relations, Yin Chan

Critical and Creative Thinking Capstones Collection

The plight of suburban wildlife receives considerably less attention than that of exotic or endangered species despite facing similar threats due to the decline of their natural habitats as humans expand upon them. From the perspective of a reflective practitioner, this paper provides new avenues to rethink current views on human-local wildlife relations and answer some of the difficult questions surrounding the topic. The methodology of Action Research is employed to explore concepts relevant to human-local wildlife relations. A synthesized practical framework integrating Action Research with Permaculture Design is proposed to create models for mutually beneficial coexistence between local wildlife …

Reconstructing The Ecological Relationships Of Late Cretaceous Antarctic Dinosaurs And How Functional Tooth Morphology Influenced These Relationships, Ian D. Broxson

2022 Symposium

The Sandwich Bluff Formation of the James Ross Basin of Antarctica has recently yielded a group of five late Cretaceous dinosaurs that lived contemporaneously with each other, a first for Antarctica. These five dinosaurs include fragmentary remains of two differently sized elasmarian ornithopods, a possible megaraptor, a hadrosaur, and a nodosaur. In this study we will construct a model of the ecological relationships of late Cretaceous Antarctica. Additionally, we will look at what specific factors allowed this group of four herbivores and a carnivore to coexist in a restricted locality and what niches were filled by each species. Methods to …

An Overview Of The Current Research On Epiphyte Ecology, Kelsey Inman-Carter

Honors Projects

Epiphytes are non-parasitic, photosynthetic organisms that depend on other photosynthetic host organisms for support. Epiphytes can be found both in aquatic and terrestrial habitats. The interactions between epiphytes and their hosts can vary based on both their habitat and the features of individual hosts. This review explores the many facets of epiphyte research, including: the diversity of epiphytes in aquatic and terrestrial habitats; the effects of host-epiphyte interactions on the hosts; and the abiotic and biotic interactions that together determine epiphyte community composition.

Development And Validation Of An Edna Protocol For Monitoring Endemic Asian Spiny Frogs In The Himalayan Region Of Pakistan, Muhammad Saeed, Muhammad Rais, Ayesha Akram, Maggie R. Williams, Kenneth F. Kellner, Syed A. Hashsham, Drew R. Davis

School of Earth, Environmental, and Marine Sciences Faculty Publications and Presentations

Wildlife monitoring programs are instrumental for the assessment of species, habitat status, and for the management of factors affecting them. This is particularly important for species found in freshwater ecosystems, such as amphibians, as they have higher estimated extinction rates than terrestrial species. We developed and validated two species-specific environmental DNA (eDNA) protocols and applied them in the field to detect the Hazara Torrent Frog (Allopaa hazarensis) and Murree Hills Frog (Nanorana vicina). Additionally, we compared eDNA surveys with visual encounter surveys and estimated site occupancy. eDNA surveys resulted in higher occurrence probabilities for both A. …

The Secret Life Of Diatoms: An Exploration Of The Fascinating World Of Diatoms Through The Art Of Printmaking, Zofia Danielson

WWU Honors College Senior Projects

Diatoms are a type of microscopic primary producer that fall within the group of phytoplankton. They are named for their two halves: two cell walls made of glass (silica). These glass walls have a variety of forms depending upon the species that allow diatoms to adapt to their marine environments. Diatoms also contribute to productive coastal ecosystems, global oxygen production, and nutrient cycles. This project explored the significance of diatoms to marine ecosystems and their beauty in form through relief linocut printmaking in a workshop setting. The final result of this project is a relief printmaking workshop curriculum about diatoms …