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Convergence, Constraint And The Role Of Gene Expression During Adaptive Radiation: Floral Anthocyanins In Aquilegia, Justen B. Whittall, Claudia Voelckel, Daniel J. Kliebenstein, Scott A. Hodges

Biology

Convergent phenotypes are testament to the role of natural selection in evolution. However, little is known about whether convergence in phenotype extends to convergence at the molecular level. We use the independent losses of floral anthocyanins in columbines (Aquilegia) to determine the degree of molecular convergence in gene expression across the anthocyanin biosynthetic pathway (ABP). Using a phylogeny of the North American Aquilegia clade, we inferred six independent losses of floral anthocyanins. Via semiquantitative reverse transcriptase-polymerase chain reaction (RT-PCR), we monitored developmental and tissue-specific variation in expression of the six major structural ABP loci in three Aquilegia species, two that …

Santa Clara Magazine, Volume 48 Number 2, Fall 2006, Santa Clara University

Santa Clara Magazine

8 - TRUTH, LEGEND, AND JESSE JAMES By Ron Hansen M.A. '95. Jesse James' exploits made him a legend even in his own time. Now the author of the novel The Assassination of Jesse James by the Coward Robert Ford reveals what it takes to get beyond coloring book heroes and villains to understanding a charming psychopath and his killer. Plus insights into the making of the forthcoming film starring Brad Pitt and Casey Affleck.

14 - VIOLENCE IN THE MOVIES By Jim Shepard. Movies keep giving us more motion, more mayhem-which is exactly what we want. But what price …

The Evolution Of Organismal Complexity In Angiosperms As Measured By The Information Content Of Taxonomic Descriptions, J. Gordon Burleigh, Justen B. Whittall, Michael J. Sanderson

Biology

We describe an information theoretic method for measuring relative organismal complexity. The complexity measure is based on the amount of information contained in formal taxonomic descriptions of organisms. We examine the utility of this measure for quantifying the complexity of plant families. The descriptions are subjective by nature, but we find a significant correlation in the complexity values of plant families from two independently authored sets of formal taxonomic descriptions. An analysis of the evolution of complexity across angiosperms found evidence of a pattern of increasing complexity. Our measure of complexity provides an operational definition of complexity that may be …

Santa Clara Magazine Volume 48 Number 1, Summer 2006, Santa Clara University

Santa Clara Magazine

8 - THE MAN BEHIND THE SOUND by Karen Crocker Snell. As a young music-loving soldier in the final days of World War II, John T. "Jack" Mullin '36 went to investigate a German recording device called a magnetophon. His resulting work in sound profoundly affected the field of recorded audio.

14 - THREE ROOMMATES IN PARIS By John Patrick Donnelly, S.J. It has been 500 years since Francisco Xavier and Pierre Favre were born, and 450 years since the death of Ignatius of Loyola. Quite a lot has happened since 1529 at the University of Paris, when the three …

Bacterial Cell Biology: Managing Magnetosomes, Craig Stephens

Biology

Sensing of magnetic fields by living organisms — magnetosensing — is best understood in magnetotactic bacteria. Recently work has provided new insight into the biogenesis of bacterial magnetosomes, and links these organelles to a newly recognized prokaryotic cytoskeletal filament which organizes magnetosomes into a sensory structure capable of aligning cells with the geomagnetic field.

A Survey Of Nuclear Ribosomal Internal Transcribed Spacer Substitution Rates Across Angiosperms: An Approximate Molecular Clock With Life History Effects, Kathleen M. Kay, Justen B. Whittall, Scott A. Hodges

Biology

Background: A full understanding of the patterns and processes of biological diversification requires the dating of evolutionary events, yet the fossil record is inadequate for most lineages under study. Alternatively, a molecular clock approach, in which DNA or amino acid substitution rates are calibrated with fossils or geological/climatic events, can provide indirect estimates of clade ages and diversification rates. The utility of this approach depends on the rate constancy of molecular evolution at a genetic locus across time and across lineages. Although the nuclear ribosomal internal transcribed spacer region ( nrITS) is increasingly being used to infer clade ages in …

Relating The Cost Of Spinning Silk To The Tendency To Share It For Three Embiids With Different Lifestyles (Order Embiidina: Clothodidae, Notoligotomidae, And Australembiidae), Janice Edgerly-Rooks, Shailesh Shenoy, Vanessa Werner

Biology

Although adult female embiids (Order Embiidina) superficially lack morphological diversity, their variety of habitats may impose distinct selective pressures on behavior, such as their use of silk and their tendency to aggregate. For example, where silk serves as a primary defense from environmental threats, coloniality might be adaptive. The cost of production or spinning might also prompt them to share silk. These ideas were tested in laboratory trials involving three species of embiids with different lifestyles: an arboreal species (Antipaluria urichi (Saussure) from a neotropical rain forest, a species (Notoligotoma hardyi (Frederichs) that dwells on surfaces of granite outcrops in …

Santa Clara Magazine, Volume 47 Number 4, Spring 2006, Santa Clara University

Santa Clara Magazine

8 - A DREAM OPPORTUNITY by Monte Lorenzet. Santa Clara University's sleep lab is one of just a handful of similar research facilities at undergraduate institutions. Students, alumni, faculty, and the research community are all benefiting from the fledgling lab.

10 - SCIENCE AND SOCIAL JUSTICE by Kim Kooyers. Social entrepreneurs use technology to address some of the world's urgent needs. Last November, some of these innovators were honored at the Tech Museum Awards, an international awards program.

14 - GIGANTES Y CABEZUDOS by Elizabeth Kelley Gillogly '93. In an intensive workshop featuring seasoned artists from Spain, SCU students explored …

Santa Clara Magazine, Volume 48 Number 3, Winter 2006, Santa Clara University

Santa Clara Magazine

8 - WELCOME HOME, STEVE By Steven Boyd Saum. Basketball superstar Steve Nash '96 comes home to Santa Clara for a unique honor: a ceremony retiring his Bronco jersey. In a convocation address, he tells how Santa Clara changed his life. Now he wants the University to take its mission global.

12 - THE SCHOOL OF HOPE By Martha Ellen Stortz. Scholar and teacher Bill Spohn earned deep affection and the respect of the Santa Clara community in his years directing the Bannan Center for Jesuit Education. When he was stricken with cancer, he and his wife, Marty Stortz, looked …