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Aquaculture and Fisheries

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Use Of Otolith Chemistry To Assess Recruitment And Habitat Use Of A White Bass Fishery In A Nebraska Reservoir, Matthew A. Perrion, Mark A. Kaemingk, Keith D. Koupal, Casey W. Schoenebeck, Nate A. Bickford Jan 2020

Use Of Otolith Chemistry To Assess Recruitment And Habitat Use Of A White Bass Fishery In A Nebraska Reservoir, Matthew A. Perrion, Mark A. Kaemingk, Keith D. Koupal, Casey W. Schoenebeck, Nate A. Bickford

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

Managing fisheries that exhibit variable annual recruitment is challenging, and maintenance stockings are often prescribed to minimize interannual population variation. Maintenance stockings are costly and may not be necessary if sufficient natural recruitment is occurring. Therefore, developing tools and techniques that can collectively assess hatching origin and subsequent habitat use of individuals would be valuable. Herein, we aimed to assess the efficacy of otolith chemistry techniques to (1) determine whether there was evidence of natural recruitment within an annually stocked white bass population and (2) examine the potential to describe spatial reservoir use of these age-0 fish. A sample of …


Summary Of The Stock Structure Information Used For Determining Spatial Management Of The Index Species For The Scalefish Resources Of Northern Western Australia, Daniel J. Gaughan, Stephen J. Newman, Corey B. Wakefield Feb 2018

Summary Of The Stock Structure Information Used For Determining Spatial Management Of The Index Species For The Scalefish Resources Of Northern Western Australia, Daniel J. Gaughan, Stephen J. Newman, Corey B. Wakefield

WA Marine Stewardship Council report series

This paper was specifically developed in response to issues raised in an assessment of the Pilbara Trap Managed Fishery (PTMF) against the fishery sustainability standard of the Marine Stewardship Council (MSC).


Frontiers In Otolith Chemistry: Insights, Advances And Applications, B. D. Walther, K. E. Limburg, C. M. Jones, J. J. Schaffler Jan 2017

Frontiers In Otolith Chemistry: Insights, Advances And Applications, B. D. Walther, K. E. Limburg, C. M. Jones, J. J. Schaffler

OES Faculty Publications

The rapid proliferation of publications employing chemical assays of fish hard parts, and otoliths in particular, has led to many novel insights into the migration patterns, life history strategies and mixed stock dynamics of fishes across the globe (Campana et al., 2000; Elsdon et al., 2008; Walther & Limburg, 2012). These insights include uncovering diverse migratory strategies within species and populations (Kerr et al., 2009; Hogan et al., 2014; Schoen et al., 2016), quantifying rates of mixing among stocks across management boundaries (Rooker et al., 2008; Walther & Thorrold, 2010) and estimating the relative …


Beyond Zar: The Use And Abuse Of Classification Statistics For Otolith Chemistry, C. M. Jones, M. Palmers, J. J. Schaffler Jan 2017

Beyond Zar: The Use And Abuse Of Classification Statistics For Otolith Chemistry, C. M. Jones, M. Palmers, J. J. Schaffler

OES Faculty Publications

Classification method performance was evaluated using otolith chemistry of juvenile Atlantic menhaden Brevoortia tyrannus when assumptions of data normality were met and were violated. Four methods were tested [linear discriminant function analysis (LDFA), quadratic discriminant function analysis (QDFA), random forest (RF) and artificial neural networks (ANN)] using computer simulation to determine their performance when variable-group means ranged from small to large and their performance under conditions of typical skewness to double the amount of skewness typically observed. Using the kappa index, the parametric methods performed best after applying appropriate data transformation, gaining 2% better performance with LDFA performing slightly better …


Application Of Otolith Chemical Signatures To Estimate Population Connectivity Of Red Snapper In The Western Gulf Of Mexico, Michelle Zapp Sluis, Beverly K. Barnett, William F. Patterson, James H. Cowan, Alan M. Shiller Jan 2015

Application Of Otolith Chemical Signatures To Estimate Population Connectivity Of Red Snapper In The Western Gulf Of Mexico, Michelle Zapp Sluis, Beverly K. Barnett, William F. Patterson, James H. Cowan, Alan M. Shiller

Faculty Publications

Otolith chemical signatures of Red Snapper Lutjanus campechanus from six nursery regions were used to estimate the sources of recruits to four sampling regions in the western Gulf of Mexico (Gulf) and to estimate whether postsettlement mixing of Red Snapper occurs between the U.S. and Mexican portions of the western Gulf. In a previous study, region-specific otolith signatures (element : Ca ratios: Ba:Ca, Mg:Ca, Mn:Ca, Sr:Ca, and Li:Ca; stable isotope delta values: δ13C and δ18O) were developed based on age-0 Red Snapper (2005–2007 year-classes) sampled from the six nursery areas. In the present study, subadult and …


The Impact Of Multiple Nursery Areas On The Population Structure Of Atlantic Menhaden, Brevooria Tyrannus, Kristen A. Anstead Jan 2014

The Impact Of Multiple Nursery Areas On The Population Structure Of Atlantic Menhaden, Brevooria Tyrannus, Kristen A. Anstead

OES Theses and Dissertations

Understanding the population structure and patterns of connectivity in marine fishes is essential when making predictions about a species' resiliency and persistence in an increasingly changing environment. The Atlantic Menhaden Brevoortia tyrannus is a clupeid that plays a critical role in the marine food web and supports one of the largest fisheries on the US East Coast. In addition to a decrease in overall numbers and spawning stock biomass, recruitment levels have remained low since the 1990s. Menhaden use numerous estuaries along the Atlantic coast for juvenile development before recruiting to the adult population and the contribution of each of …


Effect Of Laser Ablation Depth In Otolith Life History Scans, Renée R. Hoover, Cynthia M. Jones Jan 2013

Effect Of Laser Ablation Depth In Otolith Life History Scans, Renée R. Hoover, Cynthia M. Jones

OES Faculty Publications

Life history scans of fish otoliths are bringing new insight into the structure, connectivity, and movement of fish populations. Data obtained from such scans, however, possess in-herent limitations that have not yet been fully addressed or understood. For example, several investigators have noted delays in otolith elemental uptake that do not appear to reflect habitat exposure. We hypothesized that the 3-dimensional structure of otoliths may produce sampling artifacts in the results obtained from laser ablation scans. To test this hypothesis, we sampled sagittal otoliths from juvenile Atlantic croaker Micropogonias undulatus with laser ablation inductively coupled plasma mass spectrometry to obtain …


Evaluating Methods For Optimizing Classification Success From Otolith Tracers For Spotted Seatrout (Cynoscion Nebulosus) In The Chesapeake Bay, Stacy Kavita Beharry Jan 2011

Evaluating Methods For Optimizing Classification Success From Otolith Tracers For Spotted Seatrout (Cynoscion Nebulosus) In The Chesapeake Bay, Stacy Kavita Beharry

OES Theses and Dissertations

Identifying the natal sources of fish is an important step in understanding its population dynamics. Adult recruits are often sourced from multiple nursery areas, with good quality locations contributing disproportionately more fish to the adult stock. Because population persistence is strongly influenced by nursery habitat, methods that correctly identify the source of recruits are necessary for effective management. Within the last decade, otolith chemistry signatures have been increasingly used as a natural marker to delineate fish from a mixture of nursery sources. Despite the widespread use of otolith trace element and stable isotope ratios as habitat markers, the statistical approaches …


A Reconnaissance Of The Intersex Condition In Micropterus Dolomieu Of The Upper Ohio River Basin As An Indicator Of Anthropogenic Endocrine Disruptors, Christopher Barry Jan 2009

A Reconnaissance Of The Intersex Condition In Micropterus Dolomieu Of The Upper Ohio River Basin As An Indicator Of Anthropogenic Endocrine Disruptors, Christopher Barry

Theses, Dissertations and Capstones

The intersex condition has been used as a marker of endocrine disruption in West Virginia. Fifty-two male smallmouth bass from 6 basins on the upper Ohio River were examined for the presence and severity of intersex. Vitellogenin (VTG) RNA levels were quantified as marker of estrogenic contaminants. A significant increase in intersex (p=0.02), ranging from 83.3% to 100%, corresponds with higher population densities and agricultural land (p=0.003). At reference sites, smallmouth bass had intersex frequencies of 16.7% to 33.3%. Vitellogenin results were significantly lower (p< 0.001) at impacted sites, consistent with previously reported results in female fish. VTG levels in males were not significantly different. Increased intersex occurrence in males and lowered VTG expression in females have shown that agricultural chemicals and common residential wastewater constituents are likely targets for exploring the relationship between individual EDCs and intersex. There may be a natural background level of the intersex condition.


What Exactly Are You Inferring? A Closer Look At Hypothesis Testing, Mc Newman Jan 2008

What Exactly Are You Inferring? A Closer Look At Hypothesis Testing, Mc Newman

VIMS Articles

This critical review describes the confused application of significance tests in environmental toxicology and chemistry that often produces incorrect inferences and indefensible regulatory decisions. Following a brief review of statistical testing theory, nine recommendations are put forward. The first is that confidence intervals be used instead of hypothesis tests whenever possible. The remaining recommendations are relevant if hypothesis tests are used. They are as follows: Define and justify Type I and II error rates a priori; set and justify an effect size a priori; do not confuse p(E vertical bar H-0) and p(H-0 vertical bar E); design tests permitting Positive …


Chemistry Of Surface Waters: Distinguishing Fine-Scale Differences In Sea Grass Habitats Of Chesapeake Bay, Emmanis Dorval, Cynthia M. Jones Jan 2005

Chemistry Of Surface Waters: Distinguishing Fine-Scale Differences In Sea Grass Habitats Of Chesapeake Bay, Emmanis Dorval, Cynthia M. Jones

OES Faculty Publications

We tested the hypothesis that the physical and chemical processes acting in sea grass habitats of the lower Chesapeake Bay are spatially structured and that dissolved elemental chemistry of sea grass-habitat surface waters have their own unique identity. We sampled surface waters from July to September 2001 in five sea grass habitats of the lower bay: Potomac, Rappahannock, York, Island (Tangier-Bloodsworth), and Eastern Shore. Dissolved Mg, Mn, Sr, and Ba concentrations were measured by sector field inductively coupled plasma-mass spectrometry. As expected, Mg, Sr, and Ba exhibited conservative behavior, but Mn exhibited nonconservative behavior along the salinity gradient. Spatial differences …


Predators And Life Histories Shape Lestes Damselfly Assemblages Along A Freshwater Habitat Gradient, Robby Stoks, Mark A. Mcpeek Oct 2002

Predators And Life Histories Shape Lestes Damselfly Assemblages Along A Freshwater Habitat Gradient, Robby Stoks, Mark A. Mcpeek

Dartmouth Scholarship

Survey data from New England showed that assemblages of Lestes dam- selflies are organized along the entire gradient of pond permanence and predator presence. One assemblage occupies vernal ponds lacking large dragonfly predators and fish; four are largely confined to temporary ponds that typically contain dragonfly predators; one dom- inates fishless permanent ponds and lakes where dragonflies are the top predators; and one dominates permanent ponds and lakes where fish are the top predators. We determined the role of life history and predation in maintaining this striking pattern by conducting a series of transplant experiments in the field and a …


Effects Of Developmental Activities On Streamside Salamander Communities In Boone County, West Virginia, Mindy S. Hamilton Jan 2002

Effects Of Developmental Activities On Streamside Salamander Communities In Boone County, West Virginia, Mindy S. Hamilton

Theses, Dissertations and Capstones

A study was conducted from May 1998 through June 1999 in three streams associated with mountaintop mining and valley fills in Boone County, West Virginia. Streamside salamander communities were monitored in these streams, as well as in two relatively undisturbed reference streams in the region, using refugia bags, rock-on-rock methodology, and day surveys. The relative abundance of salamanders was compared between the streams in order to detect effects of the associated valley fills to downstream biota. Relative abundance was lower in two of three streams associated with valley fills as compared to the reference streams. However, there was no significant …


A Survey Of The Water Quality And Fishes Of Rocky Branch Nature Preserve, Clark County, Illinois, Larry J. Decker Jan 1974

A Survey Of The Water Quality And Fishes Of Rocky Branch Nature Preserve, Clark County, Illinois, Larry J. Decker

Masters Theses

No abstract provided.