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Multispecies Genomic Sex Identification Using Ddx3 Gene Polymorphisms, Jessica Felts

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

PCR sex determination assays must be reliable and cost effective due to the frequent and integral use of these assays in biological research and the animal production industry. Thus, the design of proof of a primer pair with a built-in control is warranted to not only bypass the extra cost of a multiplex reaction, but also to prevent anomalous results that have been documented with other primer pairs.

The objective of this study was to design primer pairs with built in PCR amplification control to identify sex in Equus caballus (domestic horse), Homo sapiens (humans), Macaca mulatta (rhesus macaque), and …

Habitat Selection By Desert Carnivores: How Water, Intraguild Predation, And Prey Impact Animal Space Use, Nadine A. Pershyn

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Across North America large carnivores have lost nearly half of their historic range, creating openings for smaller (< 15 kg) carnivores to take over their ecological roles. Coyotes (Canis latrans) have seen a significant range expansion, including into arid deserts. It was believed that the addition of artificial water sources by humans allowed coyotes to expand into desert ecosystems where they were previously unable to survive. The kit fox (Vulpes macrotis) is a small, desert-adapted carnivore with declining populations that faces threats from coyotes of intraguild predation. This is when carnivores compete over the same prey, and the larger carnivore (intraguild predator) kills the smaller carnivore (intraguild …

Novel Polymorphisms Of Zrsr2 And Gpm6b Gene Homologs And Their Use In Sex Identification Of Bovine And Porcine Species, Evan K. Peterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Accurate and cost-effective PCR based sex identification is important in animal production because it gives producers the ability to determine the sex of embryos prior to transfer, saving time and money. The most efficient PCR sex identification assays work by using a single primer pair to amplify a specific target region located on the Y-chromosome and a second, separate target region on the X-chromosome.

This thesis reports the design of two novel assays. The first assay was designed to target the Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2 (ZRSR2) gene found on the X-chromosome and its Y-chromosome …

A Comparison Of Five Statistical Methods For Predicting Stream Temperature Across Stream Networks, Maike F. Holthuijzen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The health of freshwater aquatic systems, particularly stream networks, is mainly influenced by water temperature, which controls biological processes and influences species distributions and aquatic biodiversity. Thermal regimes of rivers are likely to change in the future, due to climate change and other anthropogenic impacts, and our ability to predict stream temperatures will be critical in understanding distribution shifts of aquatic biota. Spatial statistical network models take into account spatial relationships but have drawbacks, including high computation times and data pre-processing requirements. Machine learning techniques and generalized additive models (GAM) are promising alternatives to the SSN model. Two machine learning …

Effects Of Cache Valley Particulate Matter On Human Lung Cells, Todd L. Watterson

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

During the wintertime, residents of the Cache Valley are very aware of the poor air quality that occurs during cold-air inversion episodes. If one somehow avoids the radio and television announcements as well as the electronic roadside signs indicating poor air quality and encouraging less driving, one need only to look upward toward the mountains that surround the valley and notice the lack of daytime visibility. This lack of visibility and health warnings are due to particulate air pollution or particulate matter (PM). PM is only one of many types of regulated air pollution but is the one that occurs …

Greater Sage-Grouse Seasonal Ecology And Responses To Habitat Manipulations In Northern, Utah, Eric T. Thacker

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Declining greater sage-grouse populations (Centrocercus urophasianus; hereafter sage-grouse) have led to increased concern regarding the long-term stability of the species. Previous research has identified factors contributing to the observed population declines. Habitat degradation and loss have been implicated as major factors in population declines. Although much is known about sage-grouse biology, more information is needed about population responses to specific management actions. This research was conducted to document sage-grouse responses to site-specific management actions. Additionally, I evaluated sage-grouse temporal and seasonal habitat-use and the comparability of techniques used by range and wildlife managers to measure vegetation responses of …

Terrestrial Ecosystem Classification In The Rocky Mountains, Northern Utah, Antonin Kusbach

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Currently, there is no comprehensive terrestrial ecosystem classification for the central Rocky Mountains of the United States. A comprehensive classification of terrestrial ecosystems in a mountainous study area in northern Utah was developed incorporating direct gradient analysis, spatial hierarchy theory, the zonal concept, and concepts of diagnostic species and fidelity, together with the biogeoclimatic ecosystem classification approach used in British Columbia, Canada.

This classification was derived from vegetation and environmental sampling of both forest and non-forest ecosystems. The SNOwpack TELemetry (SNOTEL) and The National Weather Service (NWS) Cooperative Observer Program (COOP) weather station network were used to approximate climate of …

A Conceptual Framework For Understanding Effects Of Wildlife Water Developments In The Western United States, Randy T. Larsen

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Free water can be a limiting factor to wildlife in arid regions of the world. In the western United States, management agencies have installed numerous, expensive wildlife water developments (e.g. catchments, guzzlers, wells) to: 1) increase the distribution or density of target species, 2) influence animal movements, and 3) mitigate for the loss of available free water. Despite over 50 years as an active management practice, water developments have become controversial for several species. We lack an integrated understanding of the ways free water influences animal populations. In particular, we have not meshed understanding of evolutionary adaptations that reduce the …

Garter Snake (Thamnophis) Natural History: Food Habits And Interspecific Aggression, Michael J. Edgehouse

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Communication and recognition are closely intertwined and have been well documented in closely related species over the past several decades. These two types of behaviors often will aid in fostering or disrupting coexistence of similar species. Frequently, it is through different diet patterns that similar species will be able to coexist. This study uses data from 1972 through 2006 to demonstrate the diet of Thamnophis sirtalis, T. atratus, T. elegans, and T. couchii throughout their California range of sympatry with Taricha torosa. Additionally, an in depth examination of the diet of T. sirtalis, T. elegans, …

Factors Influencing Epiphytic Lichen Communities In Aspen-Associated Forests Of The Bear River Range, Idaho And Utah, Paul C. Rogers

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

In western North America, quaking aspen (Populus tremuloides Michx.) is the most common hardwood in montane landscapes. Fire suppression, grazing, wildlife management practices, and climate patterns of the past century are some of the threats to aspen coverage in this region. Researchers are concerned that aspen-dependent species may be losing habitat, thereby threatening their long-term local and regional viability. Though lichens have a rich history as air pollution indicators, I believe that they may also be useful as a metric of community diversity associated with habitat change. To date, few studies have specifically examined the status of aspen's epiphytic lichen …

Coyote Foraging Ecology, Vigilance, And Behavioral Cascades In Response To Gray Wolf Reintroduction In Yellowstone National Park, T. Adam Switalski

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Vigilance behavior can aid in the detection of predators and may also play a role in observation of conspecifics, in food acquisition, and in the prevention of kleptoparasitism. However, in most occasions, vigilance is most important as an antipredator function. Generally, factors that increase the risk of predation also increase the amount of vigilance. We examined whether the reintroduction of the large predator, the wolf, in Yellowstone National Park (YNP) would influence coyote vigilance and foraging ecology. From December 1997 to July 2000, we collected 1743 h of coyote activity budgets. Coyote home ranges occurred within wolf territories (termed high-use …

Modeling Habitat Attributes Of Cavity-Nesting Birds In The Uinta Mountains, Utah: A Hierarchical Approach, Joshua J. Lawler

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Birds may have the ability to view their environments at a wide range of spatial scales; accordingly, they may make habitat-selection decisions at multiple spatial scales. I investigated the implications of hierarchy theory and a landscape perspective on nest-site selection in cavity-nesting birds in the Uinta Mountains in northeastern Utah. I used three different approaches to address the concept of a multi-scaled nest-site selection process. First, I conducted an exploratory study in which I investigated nest-site selection at three spatial scales for Red-naped Sapsucker (Sphyrapicus nuchalis), Northern Flicker (Colaptes auratus), Tree Swallow (Tachycineta bicolor), and …

Evaluation Of Translocation Criteria For Trumpeter Swans Reintroduced To Northern Utah: Habitat Quality And Interactions With Tundra Swans, Katharina A. M. Engelhardt

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Fifty-seven Trumpeter swans (Cygnus buccinator) were translocated to the Bear River Migratory Bird Refuge and the Bear River Club Company in northern Utah. The purpose of this effort was to encourage dispersal of the Rocky Mountain population of Trumpeter swans during the winter, and to reestablish a migratory route to southern wintering grounds. I assessed the success of the translocation by evaluating 13 translocation criteria proposed in the literature. In this study I addressed two of these criteria in detail by evaluating habitat quality at the translocation sites and by analyzing potential competitive interactions with Tundra swans ( …

The Influence Of Forest Fragmentation And Landscape Pattern On American Martens And Their Prey, Christina D. Hargis

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Habitat fragmentation occurs when large tracts of an orginal habitat are replaced by smaller patches of two or more habitat types, largely through human activities. I studied the behavior of six measures of landscape pattern that seemed appropriate for quantifying fragmentation, and used these measures to investigate the effects of forest fragmentation on American martens (Martes americana) and their prey. The measures I selected were edge density, contagion, mean nearest neighbor distance between patches, mean proximity index, perimeter-area fractal dimension, and mass fractal dimension. To test the behavior of these measures with a variety of landscape patterns, I …

Factors Associated With The Highway Mortality Of Mule Deer At Jordanelle Reservoir, Utah, Laura A. Romin

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Highway mortality of deer (Odocoileus sp.) is a nationwide concern. In 1991, 538,000 deer-vehicle collisions occurred nationwide. Property damage to vehicles, human injuries and fatalities, and potential impacts to local deer populations occur from deer-vehicle collisions. Techniques have been evaluated to reduce highway mortality of deer; however, an effective, cost-efficient solution does not exist for widespread use. If mitigative technologies are to be successful, we need to understand deer behavior and movement patterns associated with highway relationships. Most research about highway deer kills has focused on white-tailed deer (Odocoileus virginianus) in mixed hardwood habitat types. The …

The Importance Of Cover For Juvenile Rainbow Trout In Lentic Systems: Field Observations And An Experimental Study On Predation, Roger Allen Tabor

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Juvenile rainbow trout Oncorhynchus mykiss stocked into mid-elevation reservoirs in Utah are vulnerable to predation from piscivorous fish and birds. I determined how effectively juvenile trout used cover to avoid these predators by (1) direct observations (snorkel transects) of habitat selection in two reservoirs and (2) measurements of survival and growth rates in a pond experiment where adult brown trout Salmo trutta were predators. Observations of juvenile trout were conducted within five weeks of stocking in 1988 and 1989. During the day, juvenile trout were abundant in complex inshore habitats and avoided simple habitats such as sand and gravel. Measurements …

Aspects Of The Feeding Ecology Of The Bonneville Cisco Of Bear Lake, Utah-Idaho, David C. Lentz

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The Bonneville cisco (Prospium gemmiferum), a small planktivorous whitefish, is an important part of the distinctive fish community of Bear Lake, Utah-Idaho. The Bonneville cisco plays a key role in the trophic structure by converting zooplankton to fish biomass and providing a major forage source for cutthroat and lake trout. Aspects of cisco feeding ecology studied include characterization of the zooplankton community composition and dynamics and cisco feeding habits and prey selection.

Composition and seasonal dynamics of the zooplankton community were determined for a fifteen month period during 1981-1982. The community was dominated by a calanoid copepod, Epischura …

Seasonal Temperature Preference Of Adult Mountain Whitefish, Prosopium Williamsoni, Jean M. Ihnat

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

Temperatures selected seasonally by adult mountain whitefish were measured in the laboratory in a horizontal gradient. Final preferendum estimates, based on acute (3-hour) preference tests conducted with fish acclimated to 5, 10, and 15 C each season, were 17.7 C (pre-spawning), 11.9 C (post-spawning), 9.9 C (winter), and 16.3 C (spring). Seasonal influence on temperature selection was evident on the basis of differences in final preferenda, covariance analysis of responses of laboratory-acclimated fish, and temperature selection by fish held at ambient river temperatures. Post-spawning and winter groups selected lower temperatures than did pre-spawning and spring groups. Pre-spawning fish selected temperatures …

Comparisons Of Phytoseiid Predator Populations In Sprayed And Unsprayed Apple Orchards In Cache Valley, Utah, Yeboa A. Dodoo

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

A comparative study of phytoseiid populations was made of two well-cultivated and regularly sprayed apple orchards with two unsprayed orchards in Cache Valley, northern Utah.

Two phytoseiid species, Typhlodromus mcgregori Chant and T. occidentalis Nesbitt were observed on the apple leaves, under the bark, and occasionally in the litter and soil. Amblyseius cucumeris (Oudemans) occurred in the soil and litter and occasionally under bark. T. mcgregori was dominant in the unsprayed orchards, and T. occidentalis in the sprayed.

Of the phytophagous mites, which served as food for the phytoseiids, the two-spotted mite, Tetranychus urticae Koch was dominant. Other phytophagous mites …

An Ecological Study Of The Utah Sculpin Cottus Bairdi Semiscaber In Logan River, Utah, William Merle Zarbock

All Graduate Theses and Dissertations, Spring 1920 to Summer 2023

The study of the Utah sculpin Cottus bairdi semiscaber, or Rocky Mountain bullhead as it is known locally on Logan River, Utah, is primarily one of determining its relation to game fish. Field work for this study began in 1949 and continued to March of 1951. Numbers of the Utah sculpin on Logan River have been estimated to be as high as 150 per tenth mile of stream. The larger populations are in the area of the third impoundment on Logan River and downstream.