Physical Sciences and Mathematics Commons^™

The Deep Bsde Method, Daniel Kovach

Masters Theses

"The curse of dimensionality is the non-linear growth in computing time as the dimension of a problem increases. Using the Deep Backwards Stochastic Differential Equation (Deep BSDE) method developed in [HJE18], I approximate the solution at an initial time to a one-dimensional diffusion equation. Although we only approximate a one-dimensional equation, this method extends well to higher dimensions because it overcomes the curse of dimensionality by evaluating the given partial differential equation along "random characteristics''. In addition to the implementation, I also present most of the mathematical theory needed to understand this method"-- Abstract, p. iii

Affine Image Registration Of Arterial Spin Labeling Mri Using Deep Learning Networks, Zongpai Zhang, Huiyuan Yang, Yanchen Guo, Nicolas R. Bolo, Matcheri Keshavan, Eve Derosa, Adam K. Anderson, David C. Alsop, Lijun Yin, Weiying Dai

Computer Science Faculty Research & Creative Works

Convolutional neural networks (CNN) have demonstrated good accuracy and speed in spatially registering high signal-to-noise ratio (SNR) structural magnetic resonance imaging (sMRI) images. However, some functional magnetic resonance imaging (fMRI) images, e.g., those acquired from arterial spin labeling (ASL) perfusion fMRI, are of intrinsically low SNR and therefore the quality of registering ASL images using CNN is not clear. In this work, we aimed to explore the feasibility of a CNN-based affine registration network (ARN) for registration of low-SNR three-dimensional ASL perfusion image time series and compare its performance with that from the state-of-the-art statistical parametric mapping (SPM) algorithm. The …

Skin Lesion Segmentation In Dermoscopic Images With Noisy Data, Norsang Lama, Jason Hagerty, Anand Nambisan, Ronald Joe Stanley, William Van Stoecker

Electrical and Computer Engineering Faculty Research & Creative Works

We Propose a Deep Learning Approach to Segment the Skin Lesion in Dermoscopic Images. the Proposed Network Architecture Uses a Pretrained Efficient Net Model in the Encoder and Squeeze-And-Excitation Residual Structures in the Decoder. We Applied This Approach on the Publicly Available International Skin Imaging Collaboration (ISIC) 2017 Challenge Skin Lesion Segmentation Dataset. This Benchmark Dataset Has Been Widely Used in Previous Studies. We Observed Many Inaccurate or Noisy Ground Truth Labels. to Reduce Noisy Data, We Manually Sorted All Ground Truth Labels into Three Categories — Good, Mildly Noisy, and Noisy Labels. Furthermore, We Investigated the Effect of Such …

An Explainable Deep Learning Model For Prediction Of Severity Of Alzheimer's Disease, Godwin Ekuma, Daniel B. Hier, Tayo Obafemi-Ajayi

Chemistry Faculty Research & Creative Works

Deep Convolutional Neural Networks (CNNs) have become the go-To method for medical imaging classification on various imaging modalities for binary and multiclass problems. Deep CNNs extract spatial features from image data hierarchically, with deeper layers learning more relevant features for the classification application. Despite the high predictive accuracy, usability lags in practical applications due to the black-box model perception. Model explainability and interpretability are essential for successfully integrating artificial intelligence into healthcare practice. This work addresses the challenge of an explainable deep learning model for the prediction of the severity of Alzheimer's disease (AD). AD diagnosis and prognosis heavily rely …

An Energy Efficient Smart Metering System Using Edge Computing In Lora Network, Preti Kumari, Rahul Mishra, Hari Prabhat Gupta, Tanima Dutta, Sajal K. Das

Computer Science Faculty Research & Creative Works

An important research issue in smart metering is to correctly transfer the smart meter readings from consumers to the operator within the given time period by consuming minimum energy. In this paper, we propose an energy efficient smart metering system using Edge computing in Long Range (LoRa). We assume that all appliances in a house are connected to a smart meter that is affixed with Edge device and LoRa node for processing and transferring the processed smart meter readings, respectively. The energy consumption of the appliances can be represented as an energy multivariate time series. The system first proposes a …

Social Media Analytics With Applications In Disaster Management And Covid-19 Events, Md Yasin Kabir

Doctoral Dissertations

"Social media such as Twitter offers a tremendous amount of data throughout an event or a disastrous situation. Leveraging social media data during a disaster is beneficial for effective and efficient disaster management. Information extraction, trend identification, and determining public reactions might help in the future disaster or even avert such an event. However, during a disaster situation, a robust system is required that can be deployed faster and process relevant information with satisfactory performance in real-time. This work outlines the research contributions toward developing such an effective system for disaster management, where it is paramount to develop automated machine-enabled …

Chimeranet: U-Net For Hair Detection In Dermoscopic Skin Lesion Images, Norsang Lama, Reda Kasmi, Jason R. Hagerty, R. Joe Stanley, Reagan Harris Young, Jessica Miinch, Januka Nepal, Anand Nambisan, William V. Stoecker

Electrical and Computer Engineering Faculty Research & Creative Works

Hair and ruler mark structures in dermoscopic images are an obstacle preventing accurate image segmentation and detection of critical network features. Recognition and removal of hairs from images can be challenging, especially for hairs that are thin, overlapping, faded, or of similar color as skin or overlaid on a textured lesion. This paper proposes a novel deep learning (DL) technique to detect hair and ruler marks in skin lesion images. Our proposed ChimeraNet is an encoder-decoder architecture that employs pretrained EfficientNet in the encoder and squeeze-and-excitation residual (SERes) structures in the decoder. We applied this approach at multiple image sizes …

Deep Learning-Based Surrogate Models For Post-Earthquake Damage Assessment, Xinzhe Yuan

Doctoral Dissertations

"Seismic damage assessment is a critical step to enhance community resilience in the wake of an earthquake. This study aims to develop deep learning-based surrogate models for widely used fragility curves to achieve more accurate and rapid assessment in practice. These surrogate models are based on artificial neural networks trained from the labelled ground motions whose resulting damage classes on targeted structures are determined by nonlinear time history analyses. The development of various surrogate models is progressed in four phases. In Phase I, the multilayer perceptron (MLP) is used to develop multivariate seismic classifiers with up to 50 hand-crafted intensity …

A Deep Learning Model To Predict Traumatic Brain Injury Severity And Outcome From Mr Images, Dacosta Yeboah, Hung Nguyen, Daniel B. Hier, Gayla R. Olbricht, Tayo Obafemi-Ajayi

Chemistry Faculty Research & Creative Works

For Many Neurological Disorders, Including Traumatic Brain Injury (TBI), Neuroimaging Information Plays a Crucial Role Determining Diagnosis and Prognosis. TBI is a Heterogeneous Disorder that Can Result in Lasting Physical, Emotional and Cognitive Impairments. Magnetic Resonance Imaging (MRI) is a Non-Invasive Technique that Uses Radio Waves to Reveal Fine Details of Brain Anatomy and Pathology. Although MRIs Are Interpreted by Radiologists, Advances Are Being Made in the Use of Deep Learning for MRI Interpretation. This Work Evaluates a Deep Learning Model based on a Residual Learning Convolutional Neural Network that Predicts TBI Severity from MR Images. the Model Achieved a …

Deep Learning For Digitized Histology Image Analysis, Sudhir Sornapudi

Doctoral Dissertations

“Cervical cancer is the fourth most frequent cancer that affects women worldwide. Assessment of cervical intraepithelial neoplasia (CIN) through histopathology remains as the standard for absolute determination of cancer. The examination of tissue samples under a microscope requires considerable time and effort from expert pathologists. There is a need to design an automated tool to assist pathologists for digitized histology slide analysis. Pre-cervical cancer is generally determined by examining the CIN which is the growth of atypical cells from the basement membrane (bottom) to the top of the epithelium. It has four grades, including: Normal, CIN1, CIN2, and CIN3. In …

Applications Of Machine Learning In Nuclear Imaging And Radiation Detection, Shaikat Mahmood Galib

Doctoral Dissertations

"The main focus of this work is to use machine learning and data mining techniques to address some challenging problems that arise from nuclear data. Specifically, two problem areas are discussed: nuclear imaging and radiation detection. The techniques to approach these problems are primarily based on a variant of Artificial Neural Network (ANN) called Convolutional Neural Network (CNN), which is one of the most popular forms of 'deep learning' technique.

The first problem is about interpreting and analyzing 3D medical radiation images automatically. A method is developed to identify and quantify deformable image registration (DIR) errors from lung CT scans …

A Distributed Semi-Supervised Platform For Dnase-Seq Data Analytics Using Deep Generative Convolutional Networks, Shayan Shams, Richard Platania, Joohyun Kim, Jian Zhang, Kisung Lee, Seungwon Yang, Seung Jong Park

Computer Science Faculty Research & Creative Works

A deep learning approach for analyzing DNase-seq datasets is presented, which has promising potentials for unraveling biological underpinnings on transcription regulation mechanisms. Further understanding of these mechanisms can lead to important advances in life sciences in general and drug, biomarker discovery, and cancer research in particular. Motivated by recent remarkable advances in the field of deep learning, we developed a platform, Deep Semi-Supervised DNase-seq Analytics (DSSDA). Primarily empowered by deep generative Convolutional Networks (ConvNets), the most notable aspect is the capability of semi-supervised learning, which is highly beneficial for common biological settings often plagued with a less sufficient number of …

Towards Distributed Cyberinfrastructure For Smart Cities Using Big Data And Deep Learning Technologies, Shayan Shams, Sayan Goswami, Kisung Lee, Seungwon Yang, Seung Jong Park

Computer Science Faculty Research & Creative Works

Recent advances in big data and deep learning technologies have enabled researchers across many disciplines to gain new insight into large and complex data. For example, deep neural networks are being widely used to analyze various types of data including images, videos, texts, and time-series data. In another example, various disciplines such as sociology, social work, and criminology are analyzing crowd-sourced and online social network data using big data technologies to gain new insight from a plethora of data. Even though many different types of data are being generated and analyzed in various domains, the development of distributed city-level cyberinfrastructure …

A Multi-Step Nonlinear Dimension-Reduction Approach With Applications To Bigdata, R. Krishnan, V. A. Samaranayake, Jagannathan Sarangapani

Mathematics and Statistics Faculty Research & Creative Works

In this paper, a multi-step dimension-reduction approach is proposed for addressing nonlinear relationships within attributes. In this work, the attributes in the data are first organized into groups. In each group, the dimensions are reduced via a parametric mapping that takes into account nonlinear relationships. Mapping parameters are estimated using a low rank singular value decomposition (SVD) of distance covariance. Subsequently, the attributes are reorganized into groups based on the magnitude of their respective singular values. The group-wise organization and the subsequent reduction process is performed for multiple steps until a singular value-based user-defined criterion is satisfied. Simulation analysis is …

Smart Augmented Reality Instructional System For Mechanical Assembly, Ze-Hao Lai

Masters Theses

"Quality and efficiency are pivotal indicators of a manufacturing company. Many companies are suffering from shortage of experienced workers across the production line to perform complex assembly tasks such as assembly of an aircraft engine. This could lead to a significant financial loss. In order to further reduce time and error in an assembly, a smart system consisting of multi-modal Augmented Reality (AR) instructions with the support of a deep learning network for tool detection is introduced. The multi-modal smart AR is designed to provide on-site information including various visual renderings with a fine-tuned Region-based Convolutional Neural Network, which is …

Automated Breast Cancer Diagnosis Using Deep Learning And Region Of Interest Detection (Bc-Droid), Richard Platania, Jian Zhang, Shayan Shams, Kisung Lee, Seungwon Yang, Seung Jong Park

Computer Science Faculty Research & Creative Works

Detection of suspicious regions in mammogram images and the subsequent diagnosis of these regions remains a challenging problem in the medical world. There still exists an alarming rate of misdiagnosis of breast cancer. This results in both over treatment through incorrect positive diagnosis of cancer and under treatment through overlooked cancerous masses. Convolutional neural networks have shown strong applicability to various image datasets, enabling detailed features to be learned from the data and, as a result, the ability to classify these images at extremely low error rates. In order to overcome the difficulty in diagnosing breast cancer from mammogram images, …

Evaluation Of Deep Learning Frameworks Over Different Hpc Architectures, Shayan Shams, Richard Platania, Kisung Lee, Seung Jong Park

Computer Science Faculty Research & Creative Works

Recent advances in deep learning have enabled researchers across many disciplines to uncover new insights about large datasets. Deep neural networks have shown applicability to image, time-series, textual, and other data, all of which are available in a plethora of research fields. However, their computational complexity and large memory overhead requires advanced software and hardware technologies to train neural networks in a reasonable amount of time. To make this possible, there has been an influx in development of deep learning software that aim to leverage advanced hardware resources. In order to better understand the performance implications of deep learning frameworks …