Physical Sciences and Mathematics Commons^™

Using Low-Fix Rate Gps Telemetry To Expand Estimates Of Ungulate Reproductive Success, Nathan D. Hooven, Kathleen E. Williams, John T. Hast, Joseph R. Mcdermott, R. Daniel Crank, Gabe Jenkins, Matthew T. Springer, John J. Cox

Forestry and Natural Resources Faculty Publications

Background

Population parameters such as reproductive success are critical for sustainably managing ungulate populations, however obtaining these data is often difficult, expensive, and invasive. Movement-based methods that leverage Global Positioning System (GPS) relocation data to identify parturition offer an alternative to more invasive techniques such as vaginal implant transmitters, but thus far have only been applied to relocation data with a relatively fine (one fix every  < 8 h) temporal resolution. We employed a machine learning method to classify parturition/calf survival in cow elk in southeastern Kentucky, USA, using 13-h GPS relocation data and three simple movement metrics, training a random forest on cows that successfully reared their calf to a week old.

Results

We developed a decision rule based upon a predicted probability threshold across individual cow time series, accurately classifying 89.5% (51/57) of cows with a known reproductive status. When used to infer status of …

Annals Of Forest Science Promotes Multidisciplinary Research On Forests And Wood In A Changing World And Is Now A Full Open Access Journal, Erwin Dreyer, Jean Michel Leban, Shuguang Léo Liu, Andreas Bolte, John M. Lhotka, Marco Ferretti, Véronique Lesage

Forestry and Natural Resources Faculty Publications

No abstract provided.

Evaluating Otter Reintroduction Outcomes Using Genetic Spatial Capture-Recapture Modified For Dendritic Networks, Sean M. Murphy, Jennifer R. Adams, Lisette P. Waits, John J. Cox

Forestry and Natural Resources Faculty Publications

Monitoring the demographics and genetics of reintroduced populations is critical to evaluating reintroduction success, but species ecology and the landscapes that they inhabit often present challenges for accurate assessments. If suitable habitats are restricted to hierarchical dendritic networks, such as river systems, animal movements are typically constrained and may violate assumptions of methods commonly used to estimate demographic parameters. Using genetic detection data collected via fecal sampling at latrines, we demonstrate applicability of the spatial capture–recapture (SCR) network distance function for estimating the size and density of a recently reintroduced North American river otter (Lontra canadensis) population in …

Diet Composition: A Proximate Mechanism Explaining Stream Salamander Declines In Surface Waters With Elevated Specific Conductivity, Jacob M. Hutton, Steven J. Price, Stephen C. Richter, Christopher D. Barton

Forestry and Natural Resources Faculty Publications

Changes in land use, such as mountaintop removal mining with valley fills (MTR-VF), often results in headwater streams with elevated specific conductivity (SC). Stream salamanders appear to be particularly sensitive to elevated SC, as previous studies have shown occupancy and abundance decline consistently among all species and life stages as SC increases. Yet, the proximate mechanism responsible for the population declines in streams with elevated SC have eluded researchers. We sampled salamander assemblages across a continuous SC gradient (30–1966 μS/cm) in southeastern Kentucky and examined the diet of larval and adult salamanders to determine if the ratio of aquatic to …

Bundles And Hotspots Of Multiple Ecosystem Services For Optimized Land Management In Kentucky, United States, Yang Bai, Thomas O. Ochuodho, Jian Yang, Domena A. Agyeman

Forestry and Natural Resources Faculty Publications

Ecosystem services are benefits that the natural environment provides to support human well-being. A thorough understanding and assessment of these services are critical to maintain ecosystem services flow through sustainable land management to optimize bundles of ecosystem services provision. Maximizing one particular ecosystem service may lead to reduction in another. Therefore, identifying ecosystem services tradeoffs and synergies is key in addressing this challenge. However, the identification of multiple ecosystem services tradeoffs and synergies is still limited. A previous study failed to effectively capture the spatial interaction among ecosystem services as it was limited by “space-to-time” substitution method used because of …

Occupancy And Abundance Of Stream Salamanders Along A Specific Conductance Gradient, Jacob M. Hutton, Steven J. Price, Simon J. Bonner, Stephen C. Richter, Christopher D. Barton

Forestry and Natural Resources Faculty Publications

In the Central Appalachians (USA), mountaintop-removal mining accompanied by valley fills often leads to streams with elevated specific conductivity (SC). Thus, the ionic composition of freshwaters in this region is hypothesized to be a driver of the distribution and abundance of freshwater taxa, including stream salamanders. We examined the association between SC and stream salamander populations by conducting salamander counts in 30 southeastern Kentucky streams across a continuous gradient of SC that ranged from 30 to 1966 μS/cm. We counted 2319 salamanders across 5 species and, using a hierarchical Bayesian version of the N-mixture model, found a negative association between …

Predicting And Mapping Plethodontid Salamander Abundance Using Lidar-Derived Terrain And Vegetation Characteristics, Marco Antonio Contreras, Wesley A. Staats, Steve J. Price

Forestry and Natural Resources Faculty Publications

Aim of the study: Use LiDAR-derived vegetation and terrain characteristics to develop abundance and occupancy predictions for two terrestrial salamander species, Plethodon glutinosus and P. kentucki, and map abundance to identify vegetation and terrain characteristics affecting their distribution.

Area of study: The 1,550-ha Clemons Fork watershed, part of the University of Kentucky’s Robinson Forest in southeastern Kentucky, USA.

Materials and methods: We quantified the abundance of salamanders using 45 field transects, which were visited three times, placed across varying soil moisture and canopy cover conditions. We created several LiDAR-derived vegetation and terrain layers and used these …

Influence Of Timber Harvesting Operations And Streamside Management Zone Effectiveness On Sediment Delivery To Headwater Streams In Appalachia, Daniel Bowker, Jeffrey W. Stringer, Christopher D. Barton

Forestry and Natural Resources Faculty Publications

Disturbances created by timber harvesting equipment and associated haul roads and skid trails can create overland sediment flows (sediment paths), especially in steeply sloping terrain, leading to stream sedimentation. This study investigated the effect of variables associated with GPS tracked harvest equipment movement, skid trail development and retirement, topography, and streamside management zone (SMZ) width and tree retention on sediment delivery to streams. While the intensity of harvest equipment traffic was not correlated with sediment path development, the presence and location of skid trails were. All of the sediment paths were found to originate at water control structures, influenced by …

Reviewing Fire, Climate, Deer, And Foundation Species As Drivers Of Historically Open Oak And Pine Forests And Transition To Closed Forests, Brice B. Hanberry, Marc D. Abrams, Mary A. Arthur, J. Morgan Varner

Forestry and Natural Resources Faculty Publications

Historically open oak and pine savannas and woodlands have transitioned to closed forests comprised of increased numbers of tree species throughout the eastern United States. We reviewed evidence for and against a suite of previously postulated drivers of forest transition focused on (1) change in fire regimes, (2) increased precipitation, (3) increased white-tailed deer densities, and (4) loss of American chestnut. We found that fire and fire exclusion provide a parsimonious mechanism for historical dominance by open forests of fire-tolerant oak and/or pine species and subsequent transition to closed forests with fire-sensitive tree species that fill the vertical profile. Based …

Competition And Burn Severity Determine Post-Fire Sapling Recovery In A Nationally Protected Boreal Forest Of China: An Analysis From Very High-Resolution Satellite Imagery, Lei Fang, Ellen V. Crocker, Jian Yang, Yan Yan, Yuanzheng Yang, Zhihua Liu

Forestry and Natural Resources Faculty Publications

Anticipating how boreal forest landscapes will change in response to changing fire regime requires disentangling the effects of various spatial controls on the recovery process of tree saplings. Spatially explicit monitoring of post-fire vegetation recovery through moderate resolution Landsat imagery is a popular technique but is filled with ambiguous information due to mixed pixel effects. On the other hand, very-high resolution (VHR) satellite imagery accurately measures crown size of tree saplings but has gained little attention and its utility for estimating leaf area index (LAI, m²/m²) and tree sapling abundance (TSA, seedlings/ha) in post-fire landscape remains …

Substantial Red Wolf Genetic Ancestry Persists In Wild Canids Of Southwestern Louisiana, Jennifer R. Adams, John J. Cox, Lisette P. Waits

Forestry and Natural Resources Faculty Publications

Concerns over red wolf (Canis rufus) extinction caused by hybridization with coyotes (C. latrans) led to the capture and removal of remnant wild wolves from southwestern Louisiana and southeastern Texas, United States, during the 1970s. Here we show that despite decades of unmitigated hybridization, and declaration of endangered red wolves as functionally extinct in the wild, red wolf mitochondrial or nuclear DNA ancestry persists in ∼55% of contemporary wild canids sampled in southwestern Louisiana. Surprisingly, one individual had 78–100% red wolf ancestry, which is within the range for 75% red wolf, red wolf backcross, or putative …

Coarse Particulate Organic Matter Dynamics In Ephemeral Tributaries Of A Central Appalachian Stream Network, Ken M. Fritz, Gregory J. Pond, Brent R. Johnson, Chris D. Barton

Forestry and Natural Resources Faculty Publications

Headwater ephemeral tributaries are interfaces between uplands and downstream waters. Terrestrial coarse particulate organic matter (CPOM) is important in fueling aquatic ecosystems; however, the extent to which ephemeral tributaries are functionally connected to downstream waters through fluvial transport of CPOM has been little studied. Hydrology and deposition of leaf and wood, and surrogate transport (Ginkgo biloba leaves and wood dowels) were measured over month‐long intervals through the winter and spring seasons (6 months) in 10 ephemeral tributaries (1.3–5.4 ha) in eastern Kentucky. Leaf deposition and surrogate transport varied over time, reflecting the seasonality of litterfall and runoff. Leaf deposition …

Potential Economic Impacts Of Allocating More Land For Bioenergy Biomass Production In Virginia, Thomas O. Ochuodho, Janaki R. R. Alavalapati, Pankaj Lal, Domena A. Agyeman, Bernabas Wolde, Pralhad Burli

Forestry and Natural Resources Faculty Publications

The growing attention to renewable energy and rural development has created greater demand for production of biomass feedstock for bioenergy. However, forest growth rates and the amount of land in most existing forests may not be sufficient to sustainably supply the forest biomass required to support existing forest products industries and the expanding bioenergy industry. Additionally, concerns about agricultural land use competition have dampened expansion of biomass production on agricultural land base. One of the ways to meet the growing forest biomass feedstock demand for bioenergy production is by allocating currently marginal non-forested land for growing bioenergy feedstocks. In Virginia, …

Wildfire Alters Spatial Patterns Of Available Soil Nitrogen And Understory Environments In A Valley Boreal Larch Forest, Jianjian Kong, Jian Yang, Bo Liu, Lin Qi

Forestry and Natural Resources Faculty Publications

Wildfire, a primary natural disturbance in many forests, affects soil nutrient availability and spatial distributions of forest plants. However, post-fire changes in soil nutrients and spatial patterns of understory environments at fine scales are poorly understood. Here, we characterized spatial patterns of soil nitrogen availability and site characteristics at a 3-year-post-fire and an unburned site in a valley boreal larch forest. We also examined the relationship between soil nitrogen availability and site characteristics. The results showed that the burned site had higher NO₃⁻ and lower NH₄⁺ than the control. The herb, litter and coarse wood debris …

Post-Wildfire Recovery Of An Upland Oak-Pine Forest On The Cumberland Plateau, Kentucky, Usa, Devin E. Black, Zachary W. Poynter, Claudia A. Cotton, Suraj Upadhaya, David D. Taylor, Wendy Leuenberger, Beth A. Blankenship, Mary A. Arthur

Forestry and Natural Resources Faculty Publications

Background: Many forests within the southern Appalachian region, USA, have experienced decades of fire exclusion, contributing to regeneration challenges for species such as oaks (Quercus spp. L.) and pines (Pinus spp. L.), and threatening the maintenance of oak-dominated forests in the future. While the use of prescribed fire as a forest management tool is increasing within this region, there remains a lack of information on the potential role of wildfire. A wildfire within the Daniel Boone National Forest, Kentucky, USA, provided an opportunity to investigate how wildfire affected forest vegetation response.

Results: We examined the effects of fire …

Dynamics Of Postfire Aboveground Carbon In A Chronosequence Of Chinese Boreal Larch Forests, Yuan Z. Yang, Wen H. Cai, Jian Yang, Megan White, John M. Lhotka

Forestry and Natural Resources Faculty Publications

Boreal forests store a large proportion of the global terrestrial carbon (C), while wildfire plays a crucial role in determining their C storage and dynamics. The aboveground C (AC) pool is an important component of forest C stocks. To quantify the turning point (transforming from C source to C sink) and recovery time of postfire AC, and assess how stand density affects the AC, 175 plots from eight stand age classes were surveyed as a chronosequence in the Great Xing'an Mountains of Northeast China. Linear and nonlinear regression analyses were conducted to describe postfire AC recovery patterns. The results showed …

Understory Community Assembly Following Wildfire In Boreal Forests: Shift From Stochasticity To Competitive Exclusion And Environmental Filtering, Bo Liu, Han Y. H. Chen, Jian Yang

Forestry and Natural Resources Faculty Publications

Understory vegetation accounts for the majority of plant species diversity and serves as a driver of overstory succession and nutrient cycling in boreal forest ecosystems. However, investigations of the underlying assembly processes of understory vegetation associated with stand development following a wildfire disturbance are rare, particularly in Eurasian boreal forests. In this study, we measured the phylogenetic and functional diversity and trait dispersions of understory communities and tested how these patterns changed with stand age in the Great Xing'an Mountains of Northeastern China. Contrary to our expectation, we found that understory functional traits were phylogenetically convergent. We found that random …

Integrating Multiple Genetic Detection Methods To Estimate Population Density Of Social And Territorial Carnivores, Sean M. Murphy, Ben C. Augustine, Jennifer R. Adams, Lisette P. Waits, John J. Cox

Forestry and Natural Resources Faculty Publications

Spatial capture–recapture models can produce unbiased estimates of population density, but sparse detection data often plague studies of social and territorial carnivores. Integrating multiple types of detection data can improve estimation of the spatial scale parameter (σ), activity center locations, and density. Noninvasive genetic sampling is effective for detecting carnivores, but social structure and territoriality could cause differential detectability among population cohorts for different detection methods. Using three observation models, we evaluated the integration of genetic detection data from noninvasive hair and scat sampling of the social and territorial coyote (Canis latrans). Although precision of estimated density was …

Assessing Ecosystem Services From The Forestry-Based Reclamation Of Surface Mined Areas In The North Fork Of The Kentucky River Watershed, Kumari Gurung, Jian Yang, Lei Fang

Forestry and Natural Resources Faculty Publications

Surface mining is a major driver of land use land cover (LULC) change in many mountainous areas such as the Appalachian region. Typical reclamation practices often result in land cover dominated by grass and shrubs. Assessing ecosystem services that can be obtained from a forest landscape may help policy-makers and other stakeholders fully understand the benefits of forestry-based reclamation (FRA). The objectives of this study are to (1) identify how surface mining and reclamation changed the LULC of a watershed encompassing the north fork of the Kentucky River, (2) assess the biophysical value of four major ecosystem services under the …

Quantifying Climate Sensitivity And Climate-Driven Change In North American Amphibian Communities, David A. W. Miller, Evan H Campbell Grant, Erin Muths, Staci M. Amburgey, Michael J. Adams, Maxwell B. Joseph, J. Hardin Waddle, Pieter T. J. Johnson, Maureen E. Ryan, Benedikt R. Schmidt, Daniel L. Calhoun, Courtney L. Davis, Robert N. Fisher, David M. Green, Blake R. Hossack, Tracy A. G. Rittenhouse, Susan C. Walls, Larissa L. Bailey, Sam S. Cruickshank, Gary M. Fellers, Thomas A. Gorman, Carola A. Haas, Ward Hughson, David S. Pilliod, Steve J. Price, Andrew M. Ray, Walt Sadinski, Daniel Saenz, William J. Barichivich, Adrianne Brand

Forestry and Natural Resources Faculty Publications

Changing climate will impact species’ ranges only when environmental variability directly impacts the demography of local populations. However, measurement of demographic responses to climate change has largely been limited to single species and locations. Here we show that amphibian communities are responsive to climatic variability, using > 500,000 time-series observations for 81 species across 86 North American study areas. The effect of climate on local colonization and persistence probabilities varies among eco-regions and depends on local climate, species life-histories, and taxonomic classification. We found that local species richness is most sensitive to changes in water availability during breeding and changes in …

Does Environment Filtering Or Seed Limitation Determine Post-Fire Forest Recovery Patterns In Boreal Larch Forests?, Wen H. Cai, Zhihua Liu, Yuan Z. Yang, Jian Yang

Forestry and Natural Resources Faculty Publications

Wildfire is a primary natural disturbance in boreal forests, and post-fire vegetation recovery rate influences carbon, water, and energy exchange between the land and atmosphere in the region. Seed availability and environmental filtering are two important determinants in regulating post-fire vegetation recovery in boreal forests. Quantifying how these determinants change over time is helpful for understanding post-fire forest successional trajectory. Time series of remote sensing data offer considerable potential in monitoring the trajectory of post-fire vegetation recovery dynamics beyond current field surveys about structural attributes, which generally lack a temporal perspective across large burned areas. We used a time series …

Spatio-Temporal Variations Of Soil Active Layer Thickness In Chinese Boreal Forests From 2000 To 2015, Xiongxiong Bai, Jian Yang, Bo Tao, Wei Ren

Forestry and Natural Resources Faculty Publications

The soil active layer in boreal forests is sensitive to climate warming. Climate-induced changes in the active layer may greatly affect the global carbon budget and planetary climatic system by releasing large quantities of greenhouse gases that currently are stored in permafrost. Ground surface temperature is an immediate driver of active layer thickness (ALT) dynamics. In this study, we mapped ALT distribution in Chinese boreal larch forests from 2000 to 2015 by integrating remote sensing data with the Stefan equation. We then examined the changes of the ALT in response to changes in ground surface temperature and identified drivers of …

Restoration Of Legacy Trees As Roosting Habitat For Myotis Bats In Eastern North American Forests, Michael J. Lacki

Forestry and Natural Resources Faculty Publications

Most eastern North American Myotis roost in forests during summer, with species forming maternity populations, or colonies, in cavities or crevices or beneath the bark of trees. In winter, these bats hibernate in caves and are experiencing overwinter mortalities due to infection from the fungus Pseudogymnoascus destructans, which causes white-nose syndrome (WNS). Population recovery of WNS-affected species is constrained by the ability of survivors to locate habitats suitable for rearing pups in summer. Forests in eastern North America have been severely altered by deforestation, land-use change, fragmentation and inadvertent introduction of exotic insect pests, resulting in shifts in tree …

First-Year Vitality Of Reforestation Plantings In Response To Herbivore Exclusion On Reclaimed Appalachian Surface-Mined Land, Zachary J. Hackworth, John M. Lhotka, John J. Cox, Christopher D. Barton, Matthew T. Springer

Forestry and Natural Resources Faculty Publications

Conventional Appalachian surface-mine reclamation techniques repress natural forest regeneration, and tree plantings are often necessary for reforestation. Reclaimed Appalachian surface mines harbor a suite of mammal herbivores that forage on recently planted seedlings. Anecdotal reports across Appalachia have implicated herbivory in the hindrance and failure of reforestation efforts, yet empirical evaluation of herbivory impacts on planted seedling vitality in this region remains relatively uninitiated. First growing-season survival, height growth, and mammal herbivory damage of black locust (Robinia pseudoacacia L.), shortleaf pine (Pinus echinata Mill.), and white oak (Quercus alba L.) are presented in response to varying intensities …

Phytophthora Cinnamomi Colonized Reclaimed Surface Mined Sites In Eastern Kentucky: Implications For The Restoration Of Susceptible Species, Kenton L. Sena, Kevin M. Yeager, Tyler J. Dreaden, Christopher D. Barton

Forestry and Natural Resources Faculty Publications

Appalachian forests are threatened by a number of factors, especially introduced pests and pathogens. Among these is Phytophthora cinnamomi, a soil-borne oomycete pathogen known to cause root rot in American chestnut, shortleaf pine, and other native tree species. This study was initiated to characterize the incidence of P. cinnamomi on surface mined lands in eastern Kentucky, USA, representing a range of time since reclamation (10, 12, 15, and 20 years since reclamation). Incidence of P. cinnamomi was correlated to soil properties including overall soil development, as indicated by a variety of measured soil physical and chemical parameters, especially the …

Predicting Potential Fire Severity Using Vegetation, Topography And Surface Moisture Availability In A Eurasian Boreal Forest Landscape, Lei Fang, Jian Yang, Megan White, Zhihua Liu

Forestry and Natural Resources Faculty Publications

Severity of wildfires is a critical component of the fire regime and plays an important role in determining forest ecosystem response to fire disturbance. Predicting spatial distribution of potential fire severity can be valuable in guiding fire and fuel management planning. Spatial controls on fire severity patterns have attracted growing interest, but few studies have attempted to predict potential fire severity in fire-prone Eurasian boreal forests. Furthermore, the influences of fire weather variation on spatial heterogeneity of fire severity remain poorly understood at fine scales. We assessed the relative importance and influence of pre-fire vegetation, topography, and surface moisture availability …

Influence Of Damming On Anuran Species Richness In Riparian Areas: A Test Of The Serial Discontinuity Concept, Jacquelyn C. Guzy, Evan A. Eskew, Brian J. Halstead, Steve J. Price

Forestry and Natural Resources Faculty Publications

Almost all large rivers worldwide are fragmented by dams, and their impacts have been modeled using the serial discontinuity concept (SDC), a series of predictions regarding responses of key biotic and abiotic variables. We evaluated the effects of damming on anuran communities along a 245‐km river corridor by conducting repeated, time‐constrained anuran calling surveys at 42 locations along the Broad and Pacolet Rivers in South Carolina, USA. Using a hierarchical Bayesian analysis, we test the biodiversity prediction of the SDC (modified for floodplain rivers) by evaluating anuran occupancy and species diversity relative to dams and degree of urbanized land use. …

Remote Sensing Of Forests Using Discrete Return Airborne Lidar, Hamid Hamraz, Marco A. Contreras

Forestry and Natural Resources Faculty Publications

Airborne discrete return light detection and ranging (LiDAR) point clouds covering forested areas can be processed to segment individual trees and retrieve their morphological attributes. Segmenting individual trees in natural deciduous forests, however, remained a challenge because of the complex and multi-layered canopy. In this chapter, we present (i) a robust segmentation method that avoids a priori assumptions about the canopy structure, (ii) a vertical canopy stratification procedure that improves segmentation of understory trees, (iii) an occlusion model for estimating the point density of each canopy stratum, and (iv) a distributed computing approach for efficient processing at the forest level. …

Sampling Effort And Uncertainty In Leaf Litterfall Mass And Nutrient Flux In Northern Hardwood Forests, Yang Yang, Ruth D. Yanai, Craig R. See, Mary A. Arthur

Forestry and Natural Resources Faculty Publications

Designs for litterfall sampling can be improved by understanding the sources of uncertainty in litterfall mass and nutrient concentration. We compared the coefficient of variation of leaf litterfall mass and nutrient concentrations (nitrogen, phosphorus, calcium, magnesium, and potassium) at different spatial scales and across years for six northern hardwood species from 23 stands in the White Mountains of New Hampshire, USA. Stands with steeper slopes (P = 0.01), higher elevations (P = 0.05), and more westerly aspect (P = 0.002) had higher interannual variation in litter mass, probably due to a litter trap design that allowed litter …

Establishing Pine Monocultures And Mixed Pine-Hardwood Stands On Reclaimed Surface Mined Land In Eastern Kentucky: Implications For Forest Resilience In A Changing Climate, Geoffrey Bell, Kenton L. Sena, Christopher D. Barton, Michael French

Forestry and Natural Resources Faculty Publications

Surface mining and mine reclamation practices have caused significant forest loss and forest fragmentation in Appalachia. Shortleaf pine (Pinus echinata) is threatened by a variety of stresses, including diseases, pests, poor management, altered fire regimes, and climate change, and the species is the subject of a widescale restoration effort. Surface mines may present opportunity for shortleaf pine restoration; however, the survival and growth of shortleaf pine on these harsh sites has not been critically evaluated. This paper presents first-year survival and growth of native shortleaf pine planted on a reclaimed surface mine, compared to non-native loblolly pine ( …