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Full-Text Articles in Medicine and Health Sciences
Susceptibility Scoring In Family-Based Association Testing, Laila M. Poisson, Benjamin A. Rybicki, Steven W. Coon, Jill S. Barnholtz-Sloan, Gary A. Chase
Susceptibility Scoring In Family-Based Association Testing, Laila M. Poisson, Benjamin A. Rybicki, Steven W. Coon, Jill S. Barnholtz-Sloan, Gary A. Chase
Wayne State University Associated BioMed Central Scholarship
Abstract
Background
Family-based association testing is an important part of genetic epidemiology. Tests are available to include multiple siblings, unaffected offspring, and to adjust for environmental covariates. We explore a susceptibility residual method of adjustment for covariates.
Results
Through simulation, we show that environmental adjustments that down-weight persons who are "destined" to be affected decrease the power to detect genetic association. We used the residual adjusted method on the Framingham Heart Study offspring data, provided for Genetic Analysis Workshop 13, and got mixed results.
Conclusion
When the genetic effect and environmental effects are independent, a susceptibility residual method of adjustment …
Analysis Of Gene × Environment Interactions In Sibships Using Mixed Models, Jill S. Barnholtz-Sloan, Laila M. Poisson, Steven W. Coon, Gary A. Chase, Benjamin A. Rybicki
Analysis Of Gene × Environment Interactions In Sibships Using Mixed Models, Jill S. Barnholtz-Sloan, Laila M. Poisson, Steven W. Coon, Gary A. Chase, Benjamin A. Rybicki
Wayne State University Associated BioMed Central Scholarship
Abstract
Background
Gene × environment models are widely used to assess genetic and environmental risks and their association with a phenotype of interest for many complex diseases. Mixed generalized linear models were used to assess gene × environment interactions with respect to systolic blood pressure on sibships adjusting for repeated measures and hierarchical nesting structures. A data set containing 410 sibships from the Framingham Heart Study offspring cohort (part of the Genetic Analysis Workshop 13 data) was used for all analyses. Three mixed gene × environment models, all adjusting for repeated measurement and varying levels of nesting, were compared for …