Other Life Sciences Commons^™

Factors Influencing Primate Hair Microbiome Diversity, Catherine Kitrinos

Masters Theses

Primate hair is both a substrate upon which essential social interactions occur and an important host-pathogen interface. As commensal microbes provide important immune functions for their hosts, understanding the microbial diversity in primate hair could provide insight into primate immunity and disease transmission. While studies of human hair and skin microbiomes show differences in microbial communities across body regions, little is known about the nonhuman primate hair microbiome. In this study, we collected hair samples (n=159) from 8 body regions across 12 nonhuman primate species housed at 3 US institutions to examine 1) the diversity and composition of the primate …

Comparison Of A One-Step Real-Time Rt-Pcr And A Nested Real-Time Rt-Pcr For A Genogroup Ii Norovirus Reveals Differences In Sensitivity Depending Upon Assay Design And Visualization, Clyde S. Manuel, Cassandra Suther, Matthew D. Moore, Lee-Ann Jaykus

Food Science Department Faculty Publication Series

Human norovirus (NoV) is the leading cause of acute viral gastroenteritis and a major source of foodborne illness. Detection of NoV in food and environmental samples is typically performed using molecular techniques, including real-time reverse transcription polymerase chain reaction (RT-PCR) and less frequently, nested real-time PCR. In this study, we conducted a controlled comparison of two published NoV detection assays: a broadly reactive one-step real-time RT-PCR and a two-step nested real-time PCR assay. A 20% human fecal suspension containing a genogroup II human NoV was serially diluted, genome extracted, and subjected to amplification using the two assays compared via PCR …

Dielectric Screening In Perovskite Photovoltaics, Rui Su, Zhaojian Xu, Jiang Wu, Deying Luo, Qin Hu, Wenqiang Yang, Xiaoyu Yang, Ruopeng Zhang, Hongyu Yu, Thomas P. Russell

Polymer Science and Engineering Department Faculty Publication Series

The performance of perovskite photovoltaics is fundamentally impeded by the presence of undesirable defects that contribute to non-radiative losses within the devices. Although mitigating these losses has been extensively reported by numerous passivation strategies, a detailed understanding of loss origins within the devices remains elusive. Here, we demonstrate that the defect capturing probability estimated by the capture cross-section is decreased by varying the dielectric response, producing the dielectric screening effect in the perovskite. The resulting perovskites also show reduced surface recombination and a weaker electron-phonon coupling. All of these boost the power conversion efficiency to 22.3% for an inverted perovskite …

Dominance Style Is A Key Predictor Of Vocal Use And Evolution Across Nonhuman Primates, Anna H. Weyher, Eithne Kavanagh, Sally E. Street, Felix O. Angwela, Thore J. Bergman, Maryjka B. Blaszczyk, Laura M. Bolt, Margarita Briseño-Jaramillo, Michelle Brown, Chloe Chen-Kraus

Anthropology Department Faculty Publication Series

Animal communication has long been thought to be subject to pressures and constraints associated with social relationships. However, our understanding of how the nature and quality of social relationships relates to the use and evolution of communication is limited by a lack of directly comparable methods across multiple levels of analysis. Here, we analysed observational data from 111 wild groups belonging to 26 non-human primate species, to test how vocal communication relates to dominance style (the strictness with which a dominance hierarchy is enforced, ranging from 'despotic' to 'tolerant'). At the individual-level, we found that dominant individuals who were more …

Trabecular Bone Organoid Model For Studying The Regulation Of Localized Bone Remodeling, Yongkuk Park, Eugene Cheong, Jun-Goo Kwak, Ryan Carpenter, Jae-Hyuk Shim, Jungwoo Lee

Chemical Engineering Faculty Publication Series

Trabecular bone maintains physiological homeostasis and consistent structure and mass through repeated cycles of bone remodeling by means of tightly localized regulation. The molecular and cellular processes that regulate localized bone remodeling are poorly understood because of a lack of relevant experimental models. A tissue-engineered model is described here that reproduces bone tissue complexity and bone remodeling processes with high fidelity and control. An osteoid-inspired biomaterial-demineralized bone paper-directs osteoblasts to deposit structural mineralized bone tissue and subsequently acquire the resting-state bone lining cell phenotype. These cells activate and shift their secretory profile to induce osteoclastogenesis in response to chemical stimulation. …

An Empirical Demonstration Of The Effect Of Study Design On Density Estimations, Muhammad Ali Nawaz, Barkat Ullah Khan, Amer Mahmood, Muhammad Younas, Jaffar Ud Din, Chris Sutherland

Environmental Conservation Faculty Publication Series

The simultaneous development of technology (e.g. camera traps) and statistical methods, particularly spatially capture-recapture (SCR), has improved monitoring of large mammals in recent years. SCR estimates are known to be sensitive to sampling design, yet existing recommendations about trap spacing and coverage are often not achieved, particularly for sampling wide-ranging and rare species in landscapes that allow for limited accessibility. Consequently, most camera trap studies on large wide-ranging carnivores relies on convenience or judgmental sampling, and often yields compromised results. This study attempts to highlight the importance of carefully considered sampling design for large carnivores that, because of low densities …

Functional Traits Linked To Pathogen Prevalence In Wild Bee Communities, Laura L. Figueroa, Sally Compton, Heather Grab, Scott H. Mcart

Environmental Conservation Faculty Publication Series

Reports of pollinator declines have prompted efforts to understand contributing factors and protect vulnerable species. While pathogens can be widespread in bee communities, less is known about factors shaping pathogen prevalence among species. Functional traits are often used to predict susceptibility to stressors, including pathogens, in other species-rich communities. Here, we evaluated the relationship between bee functional traits (body size, phenology, nesting location, sociality, and foraging choice) and prevalence of trypanosomes, neogregarines, and the microsporidian Nosema ceranae in wild bee communities. For the most abundant bee species in our system, Bombus impatiens, we also evaluated the relationship between intra-specific size …

Easing Covid-19 Lockdown Measures While Protecting The Older Restricts The Deaths To The Level Of The Full Lockdown, A. S. Fokas, J. Cuevas-Maraver, P. G. Kevrekidis

Mathematics and Statistics Department Faculty Publication Series

Guided by a rigorous mathematical result, we have earlier introduced a numerical algorithm, which using as input the cumulative number of deaths caused by COVID-19, can estimate the effect of easing of the lockdown conditions. Applying this algorithm to data from Greece, we extend it to the case of two subpopulations, namely, those consisting of individuals below and above 40 years of age. After supplementing the Greek data for deaths with the data for the number of individuals reported to be infected by SARS-CoV-2, we estimated the effect on deaths and infections in the case that the easing of the …

Mpdb 2.0: A Large Scale And Integrated Medicinal Plant Database Of Bangladesh, Nazmul Hussain, Rony Chanda, Ruhshan Ahmed Abir, Mohsina Akter Mou, Md Kamrul Hasan, M Arif Ashraf

Biology Department Faculty Publication Series

ObjectiveMPDB 2.0 is built to be the continuation of MPDB 1.0, to serve as a more comprehensive data repertoire for Bangladeshi medicinal plants, and to provide a user-friendly interface for researchers, health practitioners, drug developers, and students who wish to study the various medicinal & nutritive plants scattered around Bangladesh and the underlying phytochemicals contributing to their efficacy in Bangladeshi folk medicine.ResultsMPDB 2.0 database (https://www.medicinalplantbd.com/) comprises a collection of more than five hundred Bangladeshi medicinal plants, alongside a record of their corresponding scientific, family, and local names together with their utilized parts, information regarding ailments, active compounds, and PubMed ID …

Population Size Estimation Of Seasonal Forest-Going Populations In Southern Lao Pdr, Francois Rerolle, Jerry O. Jacobson, Paul Wesson, Emily Dantzer, Andrew A. Lover, Bousay Hongvantong, Jennifer Smith, John M. Marshall, Hugh J. W. Sturrock, Adam Bennett

Biostatistics and Epidemiology Faculty Publications Series

Forest-going populations are key to malaria transmission in the Greater Mekong Sub-region (GMS) and are therefore targeted for elimination efforts. Estimating the size of this population is essential for programs to assess, track and achieve their elimination goals. Leveraging data from three cross-sectional household surveys and one survey among forest-goers, the size of this high-risk population in a southern province of Lao PDR between December 2017 and November 2018 was estimated by two methods: population-based household surveys and capture-recapture. During the first month of the dry season, the first month of the rainy season, and the last month of the …

Syllabus: Drinking Water, Sanitation, And Global Development, Emily Kumpel

Sustainability Education Resources

Within the past three decades, more than 2.6 billion people have gained access to an improved water source and 2.1 billion have gained access to an improved sanitation facility. However, improved does not always mean people have safe, reliable, accessible, or equitable water and sanitation services. Waterborne diseases continue to cause and estimated 500,000 deaths each year. What causes waterborne diseases, and what is the role of engineered systems in their spread or prevention? How can we evaluate interventions to improve health and well-being? How can research address these challenges?

I. The High Strain Rate Response Of Hollow Sphere Steel Foam; Ii. The Dynamic Response Of An American Elm Tree, Ignacio Cetrangolo

Masters Theses

PART I

Hollow-sphere (HS) steel foam is a relatively new material whose cellular morphology and material properties qualify it as a metallic foam. This is an innovative foam-like material that exhibits high stiffness paired with low relative densities. Technological advancements in the past few decades have enabled the manufacturing of this material by a sintering process and, as a result, research has begun to accelerate as a multi-school collaboration effort for this particular work. Even though commercialization has been a challenge for metallic foams, it is imperative that researchers continue to prove and promote the advantages of metallic foams despite …

Ecological Consequences Of Lost Anadromous Forage Fish In Freshwater Ecosystems, Steven R. Mattocks

Masters Theses

Beginning in the early 1600s, dam construction in New England obstructed anadromous fish access to spawning grounds during migration. As a result, anadromous forage fish populations have declined, which has impacted freshwater, marine, and terrestrial ecosystems. To determine the impacts of dams on anadromous forage fish and freshwater ecosystems, I used historical and current data to estimate population changes in alewives (Alosa pseudoharengus) from 1600-1900. A significant reduction in spawning habitat occurred in New England as a result of 1,642 dams constructed between 1600 and 1900, resulting in 14.8% and 16.6% lake and stream habitat remaining by 1900, …

Use Of Distributed Temperature Sensing Technology To Characterize Fire Behavior, Douglas Cram, Christine E. Hatch, Scott Tyler, Carlos Ochoa

Geosciences Department Faculty Publication Series

We evaluated the potential of a fiber optic cable connected to distributed temperature sensing (DTS) technology to withstand wildland fire conditions and quantify fire behavior parameters. We used a custom-made ‘fire cable’ consisting of three optical fibers coated with three different materials—acrylate, copper and polyimide. The 150-m cable was deployed in grasslands and burned in three prescribed fires. The DTS system recorded fire cable output every three seconds and integrated temperatures every 50.6 cm. Results indicated the fire cable was physically capable of withstanding repeated rugged use. Fiber coating materials withstood temperatures up to 422 °C. Changes in fiber attenuation …

Studies In The Atomic Spectrometric Determination And Speciation Of Arsenic In Environmental Samples, Nan Wang

Doctoral Dissertations

The application of work described in this dissertation, the determination of total and arsenic species in water and rice samples, is of considerable societal importance as large numbers of the citizens of many countries around the world are exposed to potentially harmful concentrations of these carcinogenic compounds by daily consumption. The field of analytical chemistry is crucial to support the operation of any treatment to decrease arsenic concentrations as well as any regulations and legislation regarding arsenic in food and the environment. The current goals of research in trace arsenic measurements and speciation are to increase knowledge of the subject …

Vernal Pool Vegetation And Soil Patterns Along Hydrologic Gradients In Western Massachusetts, Kasie Collins

Masters Theses 1911 - February 2014

This study looks at relationships along the hydrologic gradient between and within six pools; including the vegetation community, soil characteristics and hydrology. Pool conditions were monitored weekly throughout the 2011 and 2012 growing seasons. Each pool was equipped with permanent platinum-tipped redox probes to quantify the severity and duration of soil reduction. We described and analyzed 12 soil profiles in each pool, distributed in summit/upland, basin, and rim/transition positions as defined by the high water line. The pools were systematically surveyed for understory vegetation during the 2012 growing season.

Vegetation patterns varied between study areas. No clear pattern of unique …

A Multidisciplinary Approach To Food Safety Evaluation: Hummus Spoilage And Microbial Analysis Of Kitchen Surfaces In Residential Child Care Institutions (Rcci) In Massachusetts, U.S.A., Elsina E. Hagan

Masters Theses 1911 - February 2014

Food borne illnesses continues to be a public health challenge in the United States (U.S.); an estimated 9.4 million incident cases occurred in 2011. In view of this challenge we conducted two food safety studies; 1) related to product formulation (hummus spoilage challenge study) and 2) evaluating the microbial safety of domestic kitchen surfaces in Residential Child Care Institutions (RCCI pilot study).

Hummus is of Mediterranean origin but is currently eaten globally. This challenge study evaluates a variety of industrial hummus formulations (four in total, differing in pH and/or addition of a preservative (natamycin). Two batches were setup: batch 1; …

Behavior And Habitat Use Of Roseate Terns (Sterna Dougallii) Before And After Construction Of An Erosion Control Revetment, Corey Grinnell

Masters Theses 1911 - February 2014

An erosion control revetment was constructed at the Falkner Island Unit of the Stewart B. McKinney National Wildlife Refuge, Connecticut during the winter of 2000–2001. At the time, Falkner Island was the fifth largest breeding colony site for the federally endangered Roseate Tern. This study measures and describes some baseline information regarding Roseate Tern nesting, behavior, and habitat use at Falkner Island during the three breeding seasons prior to revetment construction (1998–2000). This baseline information is then compared to similar information from the first breeding season following revetment construction (2001).

For Roseate Tern adults, this study examined changes in pre-nesting …