Life Sciences Commons^™

The Plants Database: Providing Basic Plant Information, J S. Peterson, J F. Henson, W Oaks, J T. Kartesz

IGC Proceedings (1997-2023)

The PLANTS database provides basic plant information to the United States Department of Agriculture (USDA), Natural Resources Conservation Service (NRCS), its clients, cooperators, and the general public via the World Wide Web (Fig. 1). The foundation of PLANTS is a taxonomic backbone (checklist) of the vascular and nonvascular plants of North America (north of Mexico) and United States territories in the Caribbean and Pacific regions. Attribute data are appended to this backbone pertaining to distribution, vegetative specifications, nativity, federal and state status, crop data, growth form, growth parameters, species abstracts, and images.

Observations On Late Cretaceous Micrampulla (Corethrales, Bacillariophyceae) From The Campbell Plateau (Zealandia), Southwest Pacific Ocean, Kenta Abe, David M. Harwood, Richard W. Jordan

Department of Earth and Atmospheric Sciences: Faculty Publications

Late Cretaceous (late Campanian) diatom assemblages from the Campbell Plateau (Zealandia), southwest Pacific Ocean, obtained from Deep Sea Drilling Project (DSDP) Leg 29 Site 275, contain well-preserved specimens of two enigmatic diatom species currently assigned to the genus Ktenodiscus; Micrampulla parvula originally described from the Maastrichtian-age Moreno Shale, California, and Pterotheca cretacea from DSDP Site 275. In general, the two species share a number of common features with modern Corethron (domed valves, probable heterovalvate frustules, T-shaped serrated articulated spines, marginal sockets), but differ in the location of the sockets (i.e. vertically at the base of the valve dome and …

Case 3847 – Simopithecus Oswaldi Andrews, 1916 (Currently Theropithecus Oswaldi; Mammalia, Primates, Cercopithecidae), Proposed Conservation By Reversal Of Precedence With Cynocephalus Atlanticus Thomas, 1884., Eric Delson, David M. Alba, Stephen R. Frost, Dagmawit Abebe Getahun, Christopher C. Gilbert

Publications and Research

The purpose of this application, under Articles 23.9.3 and 81.1 of the Code, is to conserve the usage of the species-group name Simopithecus oswaldi Andrews, 1916 by giving it precedence over its senior subjective synonym Cynocephalus atlanticus Thomas, 1884. Theropithecus is a common to dominant member of the extinct primate community across Africa after 4 million years ago (Jablonski & Frost, 2010) and often co-occurred with extinct humans (Hominini); fossils are also known rarely across Eurasia (Roberts et al., 2014). Most fossil samples are currently included in Theropithecus oswaldi (Andrews, 1916), which is often divided into chrono-geographic subspecies. Cynocephalus atlanticus …

Molecular Markers For Classification Of Seed Collections Of Lolium Cultivars, Maragret Wallace, J. Provan, Trevor J. Gilliland

IGC Proceedings (1997-2023)

No abstract provided.

Hypsugo Stubbei Sp. Nov., A Novel Cryptic Bat Species Of The Genus Hypsugo (Vespertilionidae, Chiroptera, Mammalia) From Mongolia, Dietrich Dolch, Nyamsuren Batsaikhan, Annegret Stubbe, Dirk Steinhauser

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

The occurrence of two members of the genus Hypsugo, namely H. alaschanicus and H. savii caucasicus, have been reported for Mongolia in the literature. Due to various taxonomic reassignments within and between genera, the number of records for the genus Hypsugo in Mongolia is quite scarce and sometimes not resolved at species or subspecies level. Despite recognition of the two above-mentioned species, recent reports based on genetic analyses describe only new and further records of H. alaschanicus. Thus, it exists a large uncertainty regarding the occurrence and distribution of H. savii caucasicus in Mongolia. Here, our efforts …

The Corvonirmus Group (Insecta, Psocodea, Phthiraptera, Ischnocera) Of Corvids (Aves, Corvidae). I. Stubbenirmus Gen. Nov., Eberhard Mey

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

1. The genera Corvonirmus Eichler, 1944 (with 11 spp.), Hecatrishula Gustafsson & Bush, 2017 (with 8 spp.), and Lycocoranirmus Mey, 2017 (with 5 spp.), which belong to the Brueelia complex (Philopteridae s. l.), are morpho-structurally characterized mainly by head structures and chaetotaxy. They are defined as a group of related taxa that should be placed in the rank of a subfamily (Corvonirminae subfam. nov.) if the former Brueeliinae sensu EICHLER (1963:177) would get the status of a separate family (Brueeliidae).

2. Within the Corvonirmus group, the former Hecatrishula biguttata species group is assumed to be classified as new …

First Record Of Blacknape Large-Eye Bream Gymnocranius Satoi (Perciformes: Lethrinidae) In The Philippines, Nicko Amor Flores, Jade Tifany Rey, Jeffrey T. Williams, Kent Carpenter, Mudjekeewis Santos

Biological Sciences Faculty Publications

The Philippines has been regarded as the center of the center of marine shorefish biodiversity, having the highest number of fish species per square area in the world. The blacknape large-eye bream, Gymnocranius satoi, has been reported to occur from Southern Japan, Taiwan to Northwestern Australia and to the Coral Sea, but has not previously been recorded from the Philippines. From 2011 – 2019, the National Fisheries Research and Development Institute (NFRDI) collaborated with the National Museum of Natural History of the Smithsonian Institution (NMNH/SI), USA, and the Old Dominion University (ODU), Virgina, USA, to inventory all commercial fish …

Connections In The Underworld: A Morphological And Molecular Study Of Diversity And Connectivity Among Anchialine Shrimp., Robert Eugene Ditter

FIU Electronic Theses and Dissertations

This research investigates the distribution and population structure of crustaceans, endemic to anchialine systems in the tropical western Atlantic focusing on cave-dwelling shrimp from the family Barbouriidae. Taxonomic and molecular tools (genetic and genomic) are utilized to examine population dynamics and the presence of phenotypic hypervariation (PhyV) of the critically endangered species Barbouria cubensis (von Martens, 1872). The presence of PhyV and its geographic distribution is investigated among anchialine populations of B. cubensis from 34 sites on Abaco, Eleuthera, and San Salvador, Bahamas. Examination of 54 informative morphological characters revealed PhyV present in nearly 90% (n=463) of specimens with no …

Repositories For Taxonomic Data: Where We Are And What Is Missing, Aurélian Miralles, Teddy Bruy, Katherine Wolcott, Mark D. Scherz, Dominik Begerow, Bank Beszteri, Michael Bonkowski, Janine Felden, Birgit Gemeinholzer, Frank Glaw, Frank Oliver Glöckner, Oliver Hawlitschek, Ivaylo Kostadinov, Tim W. Nattkemper, Christian Printzen, Jasmin Renz, Nataliya Rybalka, Marc Stadler, Tanja Weibulat, Thomas Wilke, Susanne S. Renner, Miguel Vences

Harold W. Manter Laboratory: Library Materials

Natural history collections are leading successful large-scale projects of specimen digitization (images, metadata, DNA barcodes), thereby transforming taxonomy into a big data science. Yet, little effort has been directed towards safeguarding and subsequently mobilizing the considerable amount of original data generated during the process of naming 15,000–20,000 species every year. From the perspective of alpha-taxonomists, we provide a review of the properties and diversity of taxonomic data, assess their volume and use, and establish criteria for optimizing data repositories. We surveyed 4,113 alpha-taxonomic studies in representative journals for 2002, 2010, and 2018, and found an increasing yet comparatively limited use …

Betting & Hierarchy In Paleontology, Leonard Finkelman

Faculty Publications

In his Rock, Bone, and Ruin: An Optimist’s Guide to the Historical Sciences, Adrian Currie argues that historical scientists should be optimistic about success in reconstructing the past on the basis of future research. This optimism follows in part from examples of success in paleontology. I argue that paleontologists’ success in these cases is underwritten by the hierarchical nature of biological information: extinct organisms have extant analogues at various levels of taxonomic, ecological, and physiological hierarchies, and paleontologists are adept at exploiting analogies within one informational hierarchy to infer information in another. On this account, fossils serve the role …

Crossed Tracks: Mesolimulus, Archaeopteryx, And The Nature Of Fossils, Leonard Finkelman

Faculty Publications

Organisms leave a variety of traces in the fossil record. Among these traces, vertebrate and invertebrate paleontologists conventionally recognize a distinction between the remains of an organism’s phenotype (body fossils) and the remains of an organism’s life activities (trace fossils). The same convention recognizes body fossils as biological structures and trace fossils as geological objects. This convention explains some curious practices in the classification, as with the distinction between taxa for trace fossils and for tracemakers. I consider the distinction between “parallel taxonomies,” or parataxonomies, which privileges some kinds of fossil taxa as “natural” and others as “artificial.” The motivations …

Hypoplectrus Liberte, A New And Endangered Microendemic Hamlet From Haiti (Teleostei: Serranidae), Benjamin C. Victor, Kenneth W. Marks

Marine & Environmental Sciences Faculty Articles

The hamlets of the genus Hypoplectrus comprise a species flock of about 20 species found on coral reefs of the tropical western Atlantic Ocean, distinguished by complex color patterns and sharing mitochondrial DNA haplotypes within the Caribbean Sea (Gulf of Mexico and Florida-centered species are about 3% divergent in the COI marker). The species show a variety of biogeographic patterns, from widespread common species to relatively rare species limited to small parts of the Greater Caribbean region. We describe here a distinctive striped morph of barred hamlet, apparently limited to Fort-Liberté Bay in northeastern Haiti, as the new species Hypoplectrus …

Inventory Of Oceanic Fauna Data Including Species, Weight, And Measurements From R/V Point Sur (Cruise Dp05) In The Gulf Of Mexico From 2017-05-01 To 2017-05-11, April Cook, Tracey Sutton

DEEPEND Datasets

This dataset includes an inventory of Gulf of Mexico oceanic fauna data including species, weight, and measurements collected from R/V Point Sur (Cruise DP05) from 2017-05-01 to 2017-05-11. The main gear type used was a 10-m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The MOCNESS was fitted with 6 nets which were opened according to the following depth scheme: net 0 from the surface to 1500m, net 1 from 1500-1200m, net 2 from 200-1000m, net 3 from 1000-600m, net 4 from 600-200m, and net 5 from 200m to the surface. Two trawls were conducted at each station sampled …

Inventory Of Gulf Of Mexico Oceanic Fauna Data Including Species, Weight, And Measurements From R/V Point Sur (Cruises Dp03 And Dp04) May-August, 2016, April Cook, Tracey Sutton

DEEPEND Datasets

This data set includes the biological and environmental data for all of the species collected during the DP03 (May 2016) and DP04 cruises (August 2016). The main gear type used was a 10-m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The MOCNESS was fitted with 6 nets which were opened according to the following depth scheme: net 0 from the surface to 1500m, net 1 from 1500-1200m, net 2 from 200-1000m, net 3 from 1000-600m, net 4 from 600-200m, and net 5 from 200m to the surface. Two trawls were conducted at each station sampled to capture diel …

Inventory Of Gulf Oceanic Fauna Data Including Species, Weight, And Measurements. Cruises Dp01 May 1-8, 2015 And Dp02 August 9-21, 2015 R/V On The Point Sur In The Northern Gulf Of Mexico, April Cook, Tracey Sutton

DEEPEND Datasets

This data set includes the biological and environmental data for all of the species collected during the DP01 (May 2015) and DP02 cruises (August 2015). The main gear type used was a 10-m2 Multiple Opening Closing Net and Environmental Sensing System (MOCNESS). The MOCNESS was fitted with 6 nets which were opened according to the following depth scheme: net 0 from the surface to 1500m, net 1 from 1500-1200m, net 2 from 1200-1000m, net 3 from 1000-600m, net 4 from 600-200m, and net 5 from 200m to the surface. Two trawls were conducted at each station sampled to capture diel …

First Record Of The Beetle Family Throscidae (Insecta: Coleoptera), A New Species Of I>Aulonothroscus Horn, And New Species Records To The Fauna Of Peru / Primer Registro De La Familia De Escarabajos Throscidae (Insecta: Coleoptera), Una Nueva Especie De Aulonothroscus Horn Y Tres Nuevos Registros De Especies Para La Fauna De Perú, Paul J. Johnson, Caroline S. Chaboo

Publications of UNSM Staff and Affiliates

The beetle family Throscidae is documented from Peru for the first time, based on specimens collected in the regions of Cajamarca, Junín, Loreto and Madre de Dios. Aulonothroscus tambopata new species is descri­bed from Madre de Dios. Also, three additional species of Aulonothroscus are reported from Peru for the first time – A. alvarengai Cobos new country record, A. freudi Cobos new country record, and A. oculatissimus Cobos new country record. A key separating these four species is given. This report is part of the “Beetles of Peru” project.

Se documenta por primera vez la familia de …

Der Mönchsgeier Aegypius Monachus (L., 1766) Und Seine Mallophagen (Insecta, Phthiraptera) In Der Mongolei = Cinereous Vulture Aegypius Monachus (L., 1766) And Its Chewing Lice (Insecta, Phthiraptera) In Mongolia, Eberhard Mey, Michael Stubbe, Davaa Lchagvasuren, Annegret Stubbe

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

During a series of studies on the population, ecology, and biology of the Cinereous Vulture in Mongolia, fully feathered nestlings of the species from 9 nests were examined, without the use of chemical methods, for Mallophaga infestation from 2010 to 2015. The collection resulted in several first records for Mongolia of three species: Laemobothrion vulturis (J. C. FABRICIUS, 1775) sensu lato (Amblycera, Laemobothriidae), Neocolpocephalum aegypii (TENDEIRO, 1989) (Amblycera, Menoponidae s. l.) sp. inq., and Falcolipeurus quadripustulatus (BURMEISTER, 1838) (Ischnocera, Philopteridae s. l.). Despite being expected, there has still been no record of Agypoecus brevicollis (BURMEISTER, 1838) in Mongolia.

Chewing louse …

Key To The Bat Fleas Of Mongolia, Ingo Scheffler

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

Fleas of the family Ischnopsyllidae belong to the common bat ectoparasites. The current taxonomic status of these insects in Mongolia includes seven species for which we provide a determination key.

Leucothoe Eltoni Sp. N., A New Species Of Commensal Leucothoid Amphipod From Coral Reefs In Raja Ampat, Indonesia (Crustacea, Amphipoda), James Darwin Thomas

Marine & Environmental Sciences Faculty Articles

A new species of leucothoid amphipod, Leucothoe eltoni sp. n., is described from coral reefs in Raja Ampat, Indonesia where it inhabits the branchial chambers of solitary tunicates. With an inflated first gnathopod superficially resembling the genus Paraleucothoe, this new species has a two-articulate maxilla 1 palp characteristic of the genus Leucothoe. While described from coral reef environments in tropical Indonesia and the Philippines, it is an established invasive species in the Hawaiian Islands. The most likely mode of introduction was a US Navy dry dock transported to Pearl Harbor in 1992 from Subic Bay, Philippines.

A Revision Of The Genera Of Charitometridae With Abruptly Expanded Genital Pinnules, Alois Romanowski

HCNSO Student Theses and Dissertations

Feather star (Echinodermata: Crinoidea: Comatulida) family Charitometridae has not been revised since 1950. Molecular analysis, new specimens of existing species, and the discovery of a new species has revealed the need for a generic-level revision of those genera that exhibit abruptly expanded genital pinnules. A morphological study was conducted using 57 specimens representing 10 species of the Charitometridae. The genus Poecilometra is redescribed, and two species formerly placed in Strotometra have been moved to the genus based primarily on possession of pedunculate genital pinnules and a wide flange on the first pinnular of the proximal pinnules. A new species was …

Case 3270: Isometrinae Clark, 1917 (Ecinodermata, Crinoidea): Proposed Emendation Of Spelling To Isometrainae To Remove Homonymy With Isometrinae Kraepelin, 1891 (Arachnida, Scorpiones), Victor Fet, Charles G. Messing

Victor Fet

The purpose of this application, under Articles 55 and 29 of the Code, is to remove the homonymy between the crinoid subfamily name ISOMETRINAE Clark, 1917 (type genus Isometra Clark, 1908; family ANTEDONIDAE) and the scorpion subfamily name ISOMETRINAE Kraepelin, 1891 (type genus Isometrus Ehrenberg in Hemprich & Ehrenberg, 1828; family BUTHIDAE). It is proposed that the entire generic name of Isometra should be adopted as the stem, so that the correct spelling of the crinoid subfamily will become ISOMETRAINAE Clark, 1917.

The Palm-Tree Index: Indexing With The Crowd, Aamer Mahmood, Walid G. Aref, Eduard Dragut, Saleh Basalamah

Cyber Center Publications

Crowdsourcing services allow employing human intelligence in tasks that are difficult to accomplish with computers such as image tagging and data collection. At a relatively low monetary cost and through web interfaces such as Amazon’s Mechanical Turk (AMT), humans can act as a computational operator in large systems. Recent work has been conducted to build database management systems that can harness the crowd power in database operators, such as sort, join, count, etc. The fundamental problem of indexing within crowdsourced databases has not been studied. In this paper, we study the problem of tree-based indexing within crowd-nabled databases. We investigate …

A New List Of Cuban Crinoids (Echinodermata: Crinoidea), Ruber Rodriguez-Barreras, Charles G. Messing

Marine & Environmental Sciences Faculty Articles

This review is based on the most recent taxonomic classification of extant Cuban Crinoidea. Existing material in natural history collections in Cuba was analyzed in detail and accurately reflects species presence. The crinoid literature was also reviewed. Several previously unpublished observations of species found in waters off Cuba have also been included. This paper provides the most up to date description of the Cuban crinoid fauna. Habitat, distribution, depth range and localities in Cuba are reported for each species. Collection codes for available specimens are included when known. The work describes a total of 33 species (plus two subspecies) in …

Bird Red List And Its Future Development In Mongolia, Sundev Gombobaatar, D. Samiya, Jonathan M. Baillie

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

With the involvement of the World Bank, Zoological Society of London, Dutch Government and National University of Mongolia, the volumes of Mongolian Red Lists of Fish, Amphibians and Reptiles, Birds and Mammals were completed, and Mongolia is now among the few nations that have up-to-date conservation assessments for all vertebrates. Of the 476 assessed native bird species of Mongolia, 10% were categorized as regionally threatened including Near Threatened. A further 0.6% were categorized as Critically Endangered (CR), 1.7% as Endangered (EN), 3.3% as Vulnerable (VU), and 4.4% as Near Threatened (NT). Almost 90% of Mongolian birds are categorized as Least …

An Approach To The Virtual Flora Of Mongolia – From A Data Repository To An Expert System, Http://Greif.Uni-Greifswald.De/Floragreif/, Jörg Hartleib, Martin Schnittler, Sabrina Rilke, Anne Zemmrich, Bernd Bobertz, Ulrike Najmi, Reinhard Zölitz, Susanne Starke

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

FloraGREIF is an internet accessible information system providing taxonomic, phytogeographic and ecological information on Mongolia’s flora in terms of descriptions, high-resolution plant images and an interactive WebGIS application. Organised along an updated checklist of the approx. 3000 Mongolian vascular plants that serves as a taxonomic backbone, information is split into the taxon level, referring to plant species, and the record level, referring to record or a collected plant specimen. At the latter level, images of living plants, scans of herbarium sheets, habitat photos and further notes can be found. Both data levels are linked by the name of the respective …

Bryoecology In The American Southwest: Patterns Of Biodiversity And Responses To Global Change, John Carroll Brinda

UNLV Theses, Dissertations, Professional Papers, and Capstones

This dissertation combines investigation of the large-scale responses of bryophyte species diversity and distribution with small-scale physiological adaptations to global change. These two areas of inquiry are linked because one way to predict plant species responses to global change is to examine their distribution across current ecological gradients produced by factors such as latitude and elevation. By examining these biogeographic patterns one can identify those species that have a narrow tolerance and therefore are most sensitive to change. Selected bryophytes might then be used as indicator species in long-term monitoring programs. Where historical data exist, these can be used to …

Conservation Genetics Of The Endangered Eastern Freshwater Cod, Maccullochella Ikei, Catherine Jane Nock

Dr Catherine J Nock

Fragmentation over evolutionary time scales following vicariant and dispersal events has long been recognised as a dominant process in biological diversification and speciation; while anthropogenic habitat fragmentation in recent times is considered a threat to the long-term persistence of species and ecosystems. The eastern freshwater cod Maccullochella ikei is Australia’s largest endangered freshwater fish species. Abundant in the Clarence and Richmond River systems at the time of European settlement, populations crashed in the early 1900s causing local extinctions and range reduction. Recovery efforts, including a prohibition on fishing for M. ikei and hatchery breeding programs, were initiated in an attempt …

A Taxonomy-Based Model For Expertise Extrapolation, Delroy H. Cameron, Boanerges Aleman-Meza, Ismailcem Budak Arpinar, Sheron L. Decker, Amit P. Sheth

Kno.e.sis Publications

While many ExpertFinder applications succeed in finding experts, their techniques are not always designed to capture the various levels at which expertise can be expressed. Indeed, expertise can be inferred from relationships between topics and subtopics in a taxonomy. The conventional wisdom is that expertise in subtopics is also indicative of expertise in higher level topics as well. The enrichment of Expertise Profiles for finding experts can therefore be facilitated by taking domain hierarchies into account. We present a novel semantics-based model for finding experts, expertise levels and collaboration levels in a peer review context, such as composing a Program …

Ectoparasites Of Bats In Mongolia (Ischnopsyllidae, Nycteribiidae, Cimicidae And Spinturnicidae), Ingo Sceffler, Dietrich Dolch, Jargalsaikhan Ariunbold, Nyamsuren Batsajchan, Andreas Abraham, Klaus Thiele

Erforschung biologischer Ressourcen der Mongolei / Exploration into the Biological Resources of Mongolia, ISSN 0440-1298

For large parts of the world, the knowledge of bat ectoparasites is still scanty. Regarding Mongolia, only few studies exist to date. This paper analyzes results from extensive captures between 2005-2008, carried out in different sites of Mongolia. Discussed ectoparasites include bat fleas, (Ischnopsyllidae), bat flies (Nycteribiidae), and bat bugs (Cimicidae) and spinturnicid mites (Spinturnicidae). A number of species found in this study were new records for Mongolia, and for many species additional sites were reported. For some bat species, the spectrum and frequency of larger ectoparasites could be determined for the first time.

Leucothoidae, Kristine N. White, James Darwin Thomas

Marine & Environmental Sciences Faculty Articles

Four genera and 17 species of leucothoids, the majority of these belonging to the genus Leucothoe, are herein reported from the Great Barrier Reef. Fifteen species are new to science and only Anamixis bazimut has been previously reported from the Great Barrier Reef.