Life Sciences Commons^™

Monitoring Soft-Mast Production In Pine Woodland Restoration Areas On The Ouachita National Forest, Tamara B. Wood

Electronic Theses and Dissertations

The use of prescribed fire is integral to the restoration of open woodland habitats in the southeast, including shortleaf pine (Pinus echinata) woodlands in the Ouachita Mountains. Mature pine habitats maintained with recurrent disturbances have an open understory with a rich floristic diversity that provides quality habitat for many wildlife species, including the endemic and endangered red-cockaded woodpecker (Picoides borealis). Fire has many potential benefits for wildlife; however, the effects of fire on several important woody soft-mast producing species are not fully understood. Soft-mast quantity and quality is a key component in determining year-round habitat quality …

Evaluation Of Genetic Diversity And Stability Of Colocasia Cultivars Using Issr, Seukmin Hong

Electronic Theses and Dissertations

Using 44 ornamental Colocasia cultivars planted at Stephen F. Austin State University (Nacogdoches, TX), cultivar assessment, genetic diversity, stability, and relationship were examined with banding patterns produced from Inter-simple sequence repeat (ISSR) markers. Comparing banding patterns of vegetatively propagated clones of each cultivar, genetic stability was examined. Unweighted pair group method with arithmetic mean (UPGMA) and principal coordinate analysis (PCO) were performed to examine genetic relationship that can explain a need for the new classification Colocasia gigantea and recent movement of re-classifying Colocasia antiquorum. Average Shannon’s diversity index for all loci was found to quantify genetic diversity. The genetic …

Long-Term Sustainability Of Northern Mixedwood Management: Spatial And Temporal Aspects Of Forest Productivity, Bethany L. Munoz

Electronic Theses and Dissertations

Natural disturbances of moderate severity are common in northern temperate forests in Maine, USA. Given estimated return intervals of 575-1000 years for severe windstorms and 385-1200 years for severe fire events, few opportunities arise to evaluate high severity disturbances in northern mixedwood or northern conifer forests. This research evaluated 50-year results of clearcutting with whole-tree harvesting (WTH), stem-only harvesting (SOH), and stem-only harvesting with prescribed burning (SOHB) on growing stock, composition, and relationships among foliar and soil nutrient concentrations. At the other end of the disturbance spectrum, this research also investigated 60-year results of single-tree selection with a 10-year cutting …

Integrated Control Of Colorado Potato Beetle And Potato Virus Y Using Mineral Oil, Andrew K. Galimberti

Electronic Theses and Dissertations

Colorado potato beetle (Leptinotarsa decemlineata) (CPB) and Potato Virus Y (PVY) are two of the most damaging pests attacking potato crops. CPB can cause significant defoliation to potato fields and is difficult to control using insecticides because its populations rapidly develop insecticide resistance. PVY, which is transmitted non-persistently by aphids, can result in yield loss and rejection of seed potato lots. Due to its rapid mode of transmission, insecticides are often ineffective at curtailing the spread of the virus. Thus, an integrated pest management (IPM) approach is essential for both CPB and PVY control.

Mineral oil is a …

Prospective Associations Of Homocysteine, Executive Function, And Depressive Symptoms, Peter J. Dearborn

Electronic Theses and Dissertations

Associations of cardiovascular risk factors, cognitive performance, and depressive symptoms have been well established. However, the directionality of these associations as well as the specificity of these associations with respect to executive function are less clear. Additionally few studies have determined whether genetic risk factors, such as apolipoprotein-E4 (APOE-E4) genotype, and age moderate the associations of cardiovascular risk factors such as homocysteine with changes in depressive symptoms and how these associations may be mediated by cognitive performance. The primary aim of this study was to analyze the bidirectional associations of a full range of cognitive domains and symptoms of depression …

Estimating Density And Residency Of Bottlenose Dolphins (Tursiops Truncatus) In Three Estuarine Sites In South Carolina, Jessica Nicole Conway

Electronic Theses and Dissertations

Of the three estuarine bottlenose dolphin stocks in South Carolina, two are considered data insufficient, with no minimum population estimate or assigned potential biological removal value. Additionally, the Northern Georgia Southern South Carolina Estuarine System (NGSSCES) stock’s boundaries are based on sighting data that do not extend to the full area encompassed by the boundary lines. In areas where stock boundaries are not clearly defined and data is insufficient for traditional methods of estimating abundance, density may provide insight into local distributions and serve as a proxy for actual abundance. Photo-identification surveys were conducted in three sites, representative of the …

Habitat Use Of Blacktip Sharks (Carcharhinus Limbatus) At Fishing Piers, Kelsey L. Spencer

Electronic Theses and Dissertations

Blacktip sharks (Carcharhinus limbatus) can be observed near fishing piers throughout the summer along the northeast coast of South Carolina. These piers attract and support a wide variety of potential prey and sharks are able to forage on fishers’ discards with minimal energetic cost. I tagged 12 blacktip sharks with acoustic transmitters, monitored piers with acoustic receivers, and conducted pier-creel surveys to determine the habitat use of blacktip sharks at fishing piers, factors that influenced residence time and presence/absence at piers, and any cyclical patterns in visits to piers. Data were analyzed with pier association indices (PAI), mixed models, and …

Exogenous Ubiquitin: Role In Myocardial Inflammation And Remodeling Post- Ischemia/Reperfusion Injury, Stephanie Scofield

Electronic Theses and Dissertations

Sympathetic stimulation occurs in the heart after injuries such as ischemia/reperfusion (I/R) and myocardial infarction and affects myocardial remodeling. Prolonged sympathetic stimulation can result in myocardial dysfunction through its effects on cardiac myocyte apoptosis and myocardial fibrosis. Ubiquitin (UB) is well known for its role of tagging old or damaged proteins for degradation via the UB-proteosome pathway. The role of exogenous UB however, is not fully understood. Previously, our lab showed that β-adrenergic receptor (β-AR) stimulation increased levels of extracellular UB in the conditioned media of adult rat ventricular myocytes and that UB inhibits β-AR-stimulated apoptosis. This study investigates the …

This Is Just A Phase : The Impact Of Population Structure On Haplotype Phasing And Linkage Disequilibrium Measures At Functional Genetic Sites., Roxanne Kaaren Leiter

Electronic Theses and Dissertations

The block-like structure of the human genome has been the subject of many scientific papers and is of practical significance in large-scale genome-wide association studies. How stringent haplotype block boundaries are within and between populations has been the subject of ongoing debate within human population genetics. This thesis will contribute to the description of universal and population-specific haplotype blocks at functional sites, namely across the IL-10 gene family (including IL-10, IL-19, IL-20 and IL-24), which is involved in a number of immune system processes, and MAPKAP-K2, an adjacent and functionally significant kinase gene. Beyond the description of blocks across these …

Functional Data Analysis Methods For Predicting Disease Status., Sarah Kendrick

Electronic Theses and Dissertations

Introduction: Differential scanning calorimetry (DSC) is used to determine thermally-induced conformational changes of biomolecules within a blood plasma sample. Recent research has indicated that DSC curves (or thermograms) may have different characteristics based on disease status and, thus, may be useful as a monitoring and diagnostic tool for some diseases. Since thermograms are curves measured over a range of temperature values, they are often considered as functional data. In this dissertation we propose and apply functional data analysis (FDA) techniques to analyze DSC data from the Lupus Family Registry and Repository (LFRR). The aim is to develop FDA methods to …

Age-Related Host Factors Regulate Lung Cancer Progression., John Caleb Greenwell

Electronic Theses and Dissertations

Cancer is largely a disease of the elderly. In the United States alone, 87% of all cancers in 2017 will be diagnosed in individuals aged 50 years or older. Among them, lung cancer is the deadliest, accounting for 1 in 4 cancer deaths. The 5-year survival rate is below 20%, a number which has not changed substantially over the past several decades. This underscores a desperate need for new strategies in prevention, early detection and treatment of this deadly disease. While tobacco use is unquestionably the number one risk factor for the development of lung cancer, the majority of diagnoses …

Nonspreading Solutions In Integro-Difference Models With Allee And Overcompensation Effects., Garrett Luther Otto

Electronic Theses and Dissertations

Previous work in Integro-Difference models have generally considered Allee effects and over-compensation separately, and have either focused on bounded domain problems or asymptotic spreading results. Some recent results by Sullivan et al. (2017 PNAS 114(19), 5053-5058) combining Allee and over-compensation in an Integro-Difference framework have shown chaotic fluctuating spreading speeds. In this thesis, using a tractable parameterized growth function, we analytically demonstrate that when Allee and over-compensation are present solutions which persist but essentially remain in a compact domain exist. We investigate the stability of these solutions numerically. We also numerically demonstrate the existence of such solutions for more general …

Developing A Collaborative Research Program To Evaluate Fine-Scale Groundfish Dynamics In Eastern Maine, Mattie Rodrigue

Electronic Theses and Dissertations

Fisheries science conducted and used for management strategies in the Gulf of Maine (GOM) is conducted at broad spatial and temporal scales. There is a tendency for fisheries-independent monitoring programs, which play a critical role in fisheries assessment and management, to miss fine-scale dynamics, especially given the complex hydrographic structures characterizing the GOM. In New England, fishermen participating in a heterogeneous groundfish fishery within the GOM may have varied perceptions of fish abundance or distribution depending on the scale at which they participate in the fishery. Overlooking fine-scale life-history dynamics coupled with scale-mismatch in science and management may perpetuate a …

Water Chemistry Dynamics In Four Vernal Pools In Maine, Usa, Lydia H. Kifner

Electronic Theses and Dissertations

Vernal pools are small seasonal wetlands that are a common landscape feature that contribute to biodiversity in northeastern North American forests. However, even basic information about their biogeochemical functions, such as carbon cycling, is limited. Dissolved gas concentrations (CH₄, CO₂) and other water chemistry parameters were monitored weekly at the bottom and surface of four vernal pools in central and eastern Maine, USA, from April to August 2016. The vernal pools were supersaturated with respect to CH₄ and CO₂ at all sampling dates and locations. Concentrations of dissolved CH₄ and CO₂ ranged …

Type Ix Secretion System : Characterization Of An Effector Protein And An Insight Into The Role Of C-Terminal Domain Dimeration In Outer Membrane Translocation., Lahari Koneru

Electronic Theses and Dissertations

Porphyromonas gingivalis and Tannerella forsythia are two of the primary pathogens that are associated in the etiology and progression of chronic periodontitis. In T. forsythia, KLIKK proteases are the recently identified group of proteolytic enzymes that are secreted through Type IX secretion system (T9SS). Among, these KLIKK proteases a synergistic relationship was observed between karilysin and mirolysin in invading the host complement system for the survival of the bacteria. Since, karilysin has been already characterized, in this study we propose to study about mirolysin through structural, biochemical and biological characterization. The obtained results from the experiments has shown the …

Examining The Understanding Of Inquiry-Based Learning And Teaching Among Undergraduate Teachers And Students, Maren Hudson

Electronic Theses and Dissertations

One of the main aims of inquiry is to engage students as active, not passive, participants in science. The purpose of this study is to describe science educators’ and students’ views about inquiry-based instruction in order to better understand and improve implementation of evidence-based teaching strategies. Inquiry-based techniques have been shown to improve student understanding of scientific concepts, yet, there continue to be challenges in implementing these techniques. This research project utilizes Q Methodology, a research method that captures both common and disparate measures of subjectivity, to identify commonalities and defining viewpoints about inquiry-based teaching and learning. Three significantly different …

The Algz/R Two-Component System Is Responsible For Attenuation Of Virulence In Pseudomonas Aeruginosa, Danielle A. Williams

Electronic Theses and Dissertations

Pseudomonas aeruginosa is an important opportunistic pathogen. Many P. aeruginosa virulence factors are regulated by the AlgZ/R two component system. AlgZ is the sensor histidine kinase which phosphorylates AlgR, the response regulator. AlgR activates transcription of different gene targets based upon its phosphorylation state. The genes that encode AlgZ and AlgR are transcribed in an operon. While regulation of algR expression has been well studied, regulation of algZ expression has not. Using a pilW mutant in concert with algZTF-lacZ transcriptional fusion, we conducted a transposon mutagenesis to identify algZ regulators. We identified an unknown autoregulatory loop. The type …

Role Of Cannabinoid Receptor Type 2 (Cb2) In Late Stage Atherosclerosis, Makenzie Fulmer

Electronic Theses and Dissertations

Atherosclerosis is a chronic inflammatory disorder of medium and large vessels. Immune signaling and dyslipidemia are two of several processes which influence lesion development in atherosclerosis. Cannabinoids, such as those found in marijuana, exert their effects through two cannabinoid receptors, CB1 and CB2. Recent studies using CB2 knockout mice and CB2-selective ligands have shed light on a protective role of CB2 in early stages of atherosclerosis. However, the role of CB2 in advanced stages of atherosclerosis remains unclear. To determine if CB2 plays a role in advanced atherosclerotic lesion composition and progression, we investigated the effects of systemic CB2 gene …

Spatially Explicit Model Of Areas Between Suitable Black Bear Habitat In East Texas And Black Bear Populations In Louisiana, Arkansas, And Oklahoma, Caitlin M. Glymph, Christopher Comer, Daniel Scognamillo, Daniel Unger, Yanli Zhang

Electronic Theses and Dissertations

Although black bears (Ursus americanus, Ursus americanus luteolus) were once found throughout the south-central United States, unregulated harvest and habitat loss resulted in severe range retractions and by the beginning of the twentieth century populations in Oklahoma, Louisiana, Texas and Arkansas were nearing extirpation. In response to these losses, translocation programs were initiated in Arkansas (1958-1968 & 2000-2006) and Louisiana (1964-1967 & 2001-2009). These programs successfully restored bears to portions of Louisiana and Arkansas, and, as populations in Arkansas began dispersing, to Oklahoma. In contrast, east Texas remains unoccupied despite the existence of suitable habitat in the region.

To facilitate …

Estimating Wildlife Biodiversity Of Pine Plantation Edges Of Contrasting Rotational Stages: A Case Study, Joshua Perry Harris

Electronic Theses and Dissertations

ESTIMATING WILDLIFE BIODIVERSITY OF PINE PLANTATION EDGES OF CONTRASTING ROTATIONAL STAGES: A CASE STUDY

By: Joshua Harris, Dr. Daniel Scognamillo, Dr. Gary Kronrad, and Dr. Jeremy Stovall

Abstract

Wildlife biodiversity was estimated amongst three loblolly pine (Pinus taeda) intra-plantation edge types of contrasting rotational phases in a two-year case study. Three structurally varied rotational phases that occur throughout plantation rotations combine to make three different edges: A= pre-thinned - post-thinned, B= pre-thinned - pre-clearcut, and C= post-thinned - pre-clearcut. For two summer seasons (May-August 2015-2016), invertebrates, birds, medium mammals, and small mammals were sampled in each edge type. …

Improving Management And Conservation Of Cusk (Brosme Brosme): Habitat Distribution, Bycatch Interactions, And Conservation Practices, Jocelyn M. Runnebaum

Electronic Theses and Dissertations

Cusk (Brosme brosme) are a National Oceanic and Atmospheric Administration species of concern, currently under internal status review for the Endangered Species Act, but are considered data limited. Current concerns for cusk include: decline in abundance, increase in fishing mortality relative to survey biomass, increased patchiness in habitat, and lack of management (72 FR 10710). Future management will require an improved understanding of cusk distribution, habitat use, spatial distribution of bycatch interactions, and the impact of bycatch on the population. This study set out to evaluate changes in cusk distribution and habitat, locations and levels of bycatch, and …

American Woodcock Migration Ecology At An Important Stopover, Cape May, New Jersey, Brian B. Allen

Electronic Theses and Dissertations

Migration poses risks and energetic demands to individuals that may be greater than those experienced during non-migratory periods. Most migratory birds require stopover sites to rest and recuperate energy spent during migratory flights, and stopover locations can alleviate risks and provide supplemental energy en route to the animal’s end destination. An individual’s stopover duration is contingent first on energy acquisition that is constrained by resource availability, and secondarily on environmental conditions such as weather that may facilitate or constrain continued migration. From 2010 to 2013 I conducted a radio-telemetry study of a short-distance migrant, the American Woodcock (Scolopax minor), on …

Evaluating The Influence Of Stem Form And Vigor On Product Potential, Growth, And Survival For Northern Commercial Hardwood Species, Mark Castle

Electronic Theses and Dissertations

Northern hardwood and mixed-wood forest types occupy a considerable percentage of the forest landscape across the Northeastern United States and portions of eastern Canada. While capable of producing valuable saw timber and veneer products, hardwood species demonstrate a wide range of stem quality resulting from the large variety of stem forms and defects that these species can manifest. The effect of different stem forms and damage has largely not been accounted for in predictions of volume, growth, and mortality. In addition to potential bias in growth and yield applications, the lack of quantification of these features has left the …

Evaluating The Dissemination Of The Icook 4-H Program Using Outcome, Process, And Fidelity Measures., Tara Gould

Electronic Theses and Dissertations

The iCook 4-H Dissemination Study, conducted in five states, was a control-treatment design to test whether a newly developed program for obesity prevention for youth could be successfully implemented by community leaders with minimal researcher involvement. Community leaders were primarily Cooperative Extension educators. A dyad model was used for youth (control=9.6±0.9 years of age; treatment=9.9±0.6 years of age) and their adult main food preparers (control=38.8±5.7 years of age; treatment=39.4±7.8 years of age). A three-pronged approach to evaluation developed previously for the program was used to measure outcomes, process, and fidelity of the program. The control group, youth (n=63) and adults …

The Paradigm Of Engagement: Integrating Social Science And Extension Outreach To Engage Beginning Family Forest Owners, Ian Anderson

Electronic Theses and Dissertations

Family forest owners own 36% of the forestland in the United States. These lands provide ecosystem services and natural resources to a broad community and management of these lands should be based on informed decisions. However, many family forest owners are unaware of conservation and stewardship options, and the number of unaware landowners may be increasing. A new cohort of beginning family forest owners (BFFO), who have acquired land in the past 5 years, has emerged. Programs designed to inform landowners about different management opportunities tend to attract only a small group of interested owners. In the following 2 phase …

Economic And Spatial Impacts Of A Wildlife Habitat Policy On Forest Management, Karin N. Bothwell

Electronic Theses and Dissertations

Regulations protecting habitat of forest-dwelling species often impact forest management practices. Those impacts may be mutually beneficial to both wildlife and forestry or they may lead to unanticipated negative outcomes, such as an associated economic cost compared to management free from habitat regulations. One example of a regulation that impacts forest management is the zoning of winter habitat of white-tailed deer (Odocoileus virginianus) in Maine, where deer abundance has been consistently below socially desired levels in most areas of the State since the 1970s due in part to the heavy toll of severe winter weather. To mitigate winter-related mortality, the …

Evaluating Mine Soil Prepared By Scraper Pans For Herbaceous Plants And Pine Seedlings At An East Texas Lignite Surface Mine, Hannah Z. Angel

Electronic Theses and Dissertations

Since 1974, Luminant Mining Company, LLC (Luminant) has planted over 38.7 million trees on its reclaimed lignite surface mine operations in Texas. For decades, the use of improved reclamation techniques on Luminant’s mined lands have resulted in over 31,160 ha reclaimed to forests, wildlife habitat, and pastures with productivity levels similar to those found on unmined lands. The development of new reclamation methodologies offers opportunities to further improve productivity of planted trees at Luminant’s Martin Lake Oak Hill Mine in east Texas. The conventional haulback or ‘truck shovel’ reclamation method uses haul trucks for the selective transport and placement of …

Pinching And Spacing Effects On Cut Sunflower (Helianthus Annuus) Production In East Texas, Rebecca B. Burnett

Electronic Theses and Dissertations

Three experiments evaluated pinching and spacing on Helianthus annuus in East Texas to determine their effects on growth and development. Experiment 1 was designed to determine the effects of pinching nodes 1, 2, 3, or 4 on ‘Pro Cut Gold’ sunflowers. Results from experiment 1 showed non-pinched plants produced marketable stem lengths and flower sizes, while pinched plants’ stem length, stem diameter, flower diameter, and disk diameter decreased compared to the non-pinched plants. The objective for experiment 2 was to evaluate pinching and spacing treatments on ‘Pro Cut Gold’ sunflowers. All spacings for non-pinched plants in experiment 2 produced marketable …

Attenuating The Antibody Reactivity Of The Shrimp Major Allergen (Tropomyosin) Using Food Processing Methods, Adeseye Lasekan

Electronic Theses and Dissertations

Shrimp is one of the major causes of adverse allergic reactions in both adults and children. Consumers with shrimp allergy have an immune system that is hypersensitive towards certain proteins in shrimp. The immune system of these consumers produces an antibody, immunoglobulin E (IgE), which binds to specific regions on these proteins and activates reactions leading to adverse symptoms. Most shrimp allergic consumers have IgE that binds to a shrimp myofibrillar protein known as tropomyosin. Other than avoidance of shrimp, structural modification of shrimp tropomyosin using food processing methods could influence the capacity of this allergenic protein to bind IgE. …

Lobster In A Changing Gulf Of Maine: Investigating The Temporal Impact On Molting And The Fishing Fleet, Kevin W. Staples

Electronic Theses and Dissertations

We investigated the phenological and fisheries dynamics surrounding the spring molt of American lobster (Homarus americanus, Milne Edwards 1847) in the Gulf of Maine. We created a time series from Maine Department of Marine Resources Lobster Sea Sampling data using logistic models to estimate the timing and duration of the spring molt for eastern, central, and western regions of the Maine coast. These estimates revealed substantial inter-annual variability in the timing of the spring molt for all regions and that 2012 was indeed anomalously early relative to other years. Each region experienced significantly different molt timing for any given …