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Articles 31 - 60 of 137
Full-Text Articles in Life Sciences
Mrub_3015 Is Orthologous To The B2757 Gene Found In Escherichia Coli Coding For Casd, Ramona Collins, Dr. Lori Scott
Mrub_3015 Is Orthologous To The B2757 Gene Found In Escherichia Coli Coding For Casd, Ramona Collins, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
This project is part of the Meiothermus ruber genome analysis project, which uses a collection of online bioinformatics tools to predict gene function. We investigated the biological function of the gene Mrub_3015, which we hypothesize is a component of the CRISPR-Cas prokaryotic defense system. We predict that Mrub_3015 (DNA coordinates 3055550...3056245) encodes the the CRISPR-associated protein cas5, which is integral in maintaining the crRNA-DNA structure, keeping the complex from base pairing with the target phage DNA. Our hypothesis is supported by identical hits for Mrub_3015 and b2527 to the KEGG, Pfam, TIGRfam, CDD and PDB databases as well as a …
Mrub_3018 Is Orthologous To E. Coli B2759 (Casb), Kyle Parker, Dr. Lori Scott
Mrub_3018 Is Orthologous To E. Coli B2759 (Casb), Kyle Parker, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
This project is part of the Meiothermus ruber genome analysis project, which uses a collection of online bioinformatics tools to predict gene function. We studied the biological activity of the Mrub_3018 gene, which we hypothesize is orthologous to E. coli gene B2759. We predicted that Mrub_3018(DNA coordinates 3057916… 3058524) encodes the protein CasB. CasB is a protein in the CRISPR CASCADE that will function as a structural protein. When the rest of the proteins form an “S” formation CasB will connect the front and back of the “S” creating a back bone for the structure. It will help bind DNA …
Mrub_3014 Is Orthologous To B2756, Samir Abdelkarim, Dr. Lori Scott
Mrub_3014 Is Orthologous To B2756, Samir Abdelkarim, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
This project is part of the Meiothermus ruber genome analysis project, which uses a collection of online bioinformatics tools to predict gene function. We investigated the biological function of the gene Mrub_3014, which we hypothesize is a component of the CRISPR-Cas prokaryotic defense system. We predict that Mrub_3014 (DNA coordinates 3054943..3055575) encodes CRISPR-associated protein Cse3/case which function as an endonuclease. Our hypothesis is supported by identical hits for Mrub_3014 and b2756 to the KEGG, Pfam, TIGRfam, CDD and PDB databases, as well as a low E-value for a pairwise NCBI BLAST comparison. Both protein products are predicted to be localized …
M. Ruber Mrub_3013 Is Orthologous To E. Coli B2755, Laura Butcher, Dr. Lori Scott
M. Ruber Mrub_3013 Is Orthologous To E. Coli B2755, Laura Butcher, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
This project is part of the Meiothermus ruber genome analysis project, which uses a collection of online bioinformatics tools to predict gene function. We investigated the biological function of gene Mrub_3013, which we hypothesize is orthologous to b2755 in E. coli K12 MG1655 (a.k.a. Cas1). We investigated the biological function of a gene with the M. ruber locus tag of Mrub_3013, which we hypothesize is a component of the CRISPR-Cas prokaryotic defense system in M. ruber. We predict that Mrub_3013 (DNA coordinates 3,053,978-3,054,940) encodes the protein Cas1 which as part of the CRISPR-Cas system, selects and cuts the foreign …
Mrub_3020, A Paralog Of Mrub_1489, Is Orthologous To E. Coli Casc (Locus Tag B2761), Alfred Dei-Ampeh, Dr. Lori Scott
Mrub_3020, A Paralog Of Mrub_1489, Is Orthologous To E. Coli Casc (Locus Tag B2761), Alfred Dei-Ampeh, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
This project is part of the Meiothermus ruber genome analysis project, which uses a collection of online bioinformatics tools to predict gene function. We investigated the biological functions of two genes: mrub_3020 and mrub_1489. We make two hypotheses in this investigation: a) mrub_3020 is orthologous to the gene b2761 in E. coli K12 MG1655 (a.k.a. casC); b) mrub_1489 is a paralog of mrub_3020. We also predict that the two genes encode unique proteins: mrub_3020 with DNA coordinates 3060491…3063190 encodes a CRISPR – associated helicase (Cas3) that supports the Cascade complex of the CRISPR – Cas adaptive immune system …
Effects Of Temperature On Crispr/Cas System, Eddie Beckom, Dr. Lori Scott
Effects Of Temperature On Crispr/Cas System, Eddie Beckom, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
This project is part of the Meiothermus ruber genome analysis project, which uses a collection of online bioinformatics tools to predict gene function. We investigated the effect of temperature on the complexity of CRISPR/Cas systems in bacterial organisms across temperature classifications. We predict that temperature extremes would result in CRISPR/Cas systems with multiple operons, repeating cas genes, and complex systems. CRISPR/Cas systems can be classified into three types with a number of subtypes based on the CRISPR-associated genes, cas genes, present in a given organism. Our hypothesis is supported by the presence of multiple operons in thermophilic organisms based on …
An Investigation Into The Relationship Between Mrub_3013, Mrub_1477, And Mrub_0224: Are They Paralogs?, Melette Devore, Dr. Lori Scott
An Investigation Into The Relationship Between Mrub_3013, Mrub_1477, And Mrub_0224: Are They Paralogs?, Melette Devore, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
This project is part of the Meiothermus ruber genome analysis project, which uses a collection of online bioinformatics tools to predict gene function. We investigated the biological function of mrub_3013 and the nature of its relationship with mrub_1477 and mrub_0224. We hypothesized that mrub_3013 is orthologous to b2755 in E. coli K12 MG1655 (a.k.a. cas1). We predict that mrub_3013 encodes the enzyme Cas1, which is involved in spacer acquisition in the CRISPR-Cas prokaryotic defense system. Our hypothesis is supported by identical hits for b2755, mrub_3013, mrub_1477, and mrub_0224 from the CDD and Pfam databases and highly similar hits from …
Smoking Cessation Treatments Varenicline (Chantix®️), Nrts, And Nicotine Dependence, Marley Vea Devoss
Smoking Cessation Treatments Varenicline (Chantix®️), Nrts, And Nicotine Dependence, Marley Vea Devoss
Biology: Student Scholarship & Creative Works
Varenicline was approved in 2006 by the FDA as an effective smoking cessation drug. Varenicline was designed to bind with α4β2 nicotinic acetylcholine receptors (nAChR) to work as both an agonist and antagonist. Other drugs like nicotine replacement therapies (NRTs) have also contributed to the decreasing rate of active smokers in the United States. The mechanisms of varenicline and its role in addiction are reviewed in this paper. With NRTs and recent trends in electronic smoking devices, nicotine dependence is still a cause for concern due to studies connecting nicotine with cell proliferation and heart disease.
Public Land Management On The Upper Mississippi: Exploring Relationships Between Management Imperatives And Ecosystem Biodiversity, Hunter Colleen Ridley
Public Land Management On The Upper Mississippi: Exploring Relationships Between Management Imperatives And Ecosystem Biodiversity, Hunter Colleen Ridley
Geography: Student Scholarship & Creative Works
Presently, public land management structure tends to disregard the interconnected nature of the social and ecological systems within managed landscapes. Since these social and ecological systems so heavily influence the identity of landscapes, it is critical that land managers understand the interactions and effects land management has with ecological structure and function. This knowledge helps land managers create more effective, sustainable, and efficient management plans and decisions. This research uses a portion of Upper Mississippi River as a case study for analyzing and discussing public land management on the Mississippi and how its structure may be influencing the ecological identity …
Stem Cell Generated Β-Cells: A Possible Solution To The Growing Problem Of Type 1 Diabetes, Danielle Rae Steffen
Stem Cell Generated Β-Cells: A Possible Solution To The Growing Problem Of Type 1 Diabetes, Danielle Rae Steffen
Biology: Student Scholarship & Creative Works
Type 1 diabetes is a growing problem throughout the world. At this time, there is no functional cure, only various treatment options. However, in recent years there has been a significant increase in both the quantity and quality of research into potential cures for type 1 diabetes. This has led to a variety of new possibilities, the most promising of which are β-cells generated from the patient’s own stem cells.
An Issue Worth Tackling: Chronic Traumatic Encephalopathy In The National Football League, Lauren K. Hogan
An Issue Worth Tackling: Chronic Traumatic Encephalopathy In The National Football League, Lauren K. Hogan
Biology: Student Scholarship & Creative Works
America has become a sports empire over the past century. As the movie Concussion put it, the National Football League has single-handedly taken over the day that used to belong to the church–but this comes at a price. Chronic traumatic encephalopathy, or CTE, is a life-altering disease associated with high impact and contact sports that has created a heated debate in our sports-driven society. A study published in 2017 discovered CTE in 177 of 202 former football players–or a staggering 87%. Why do the players continue to play in the NFL if their longevity and well-being are jeopardized? Why has …
The Wilbarger Protocol, Brittany Hatlestad
The Wilbarger Protocol, Brittany Hatlestad
Biology: Student Scholarship & Creative Works
Sensory processing disorder (SPD) is ever-increasing in children with and without disabilities. The prevalence of such a diagnosis has given rise to many different therapeutic practices. The most prescriptive, the Wilbarger protocol, will be the topic of this technique and literature review with discussions of what sensory problems are, the Wilbarger protocol, the deep pressure and proprioceptive portion of the protocol, oral tactile techniques, mechanisms of the protocol, the limitations, other options for treatment, and will conclude by looking to future research.
Effects Of Evolution On Laboratory Sublines Of Myxococcus Xanthus Dk1622, Mackenzie Ryan, Francesca Scribano, Kimberly Murphy
Effects Of Evolution On Laboratory Sublines Of Myxococcus Xanthus Dk1622, Mackenzie Ryan, Francesca Scribano, Kimberly Murphy
Celebration of Learning
Microbes have served as effective models for studying evolution because of their ability to be easily replicated, stored, and manipulated. Myxococcus xanthus is a soil bacterium that has served as a model organism in many laboratories. The unique social and motile behaviors exhibited by this bacterium make it ideal for phenotypic assays. A wild-type strain of M. xanthus, DK1622, has been distributed to laboratories across the United States and therefore we now have DK1622 sublines. The genomes of a number of these sublines have been sequenced and their social and motile phenotypes have been analyzed. When nine of these sublines …
Eye Tissue Regeneration: Seam As A Cure For Prevalent Eye Disease, Molly Bute
Eye Tissue Regeneration: Seam As A Cure For Prevalent Eye Disease, Molly Bute
Biology: Student Scholarship & Creative Works
SEAM (Self-formed ectodermal autonomous multizone) is a form of eye tissue regeneration discovered by Japanese scientists in 2016. This tissue regeneration encompasses tissues from all areas of the human eye. The SEAM forms tissues using stem cells, induced pluripotent stem cells were used in the first study, and produces four concentric zones. The SEAM that has been created was shown to cure corneal blindness in animal models, and has the potential to cure a multitude of human eye diseases in the future.
The New Hero Of Upper Limb Prosthetics, Erin Miskell
The New Hero Of Upper Limb Prosthetics, Erin Miskell
Biology: Student Scholarship & Creative Works
This paper looks at the history and future of upper extremity prosthesis. The goal of this paper was to compare three different up and coming technological advances in the field of prosthesis that may help the devices to become more life-like for their users. Of the three different approaches looked at, the Open Bionics Hero Arm is praised as being the best option.
How Auditory And Visual Working Memory Tasks Affect Misophonic Response Levels, Erin Ansusinha, Melette Devore, Dr. Daniel Corts
How Auditory And Visual Working Memory Tasks Affect Misophonic Response Levels, Erin Ansusinha, Melette Devore, Dr. Daniel Corts
Celebration of Learning
Misophonia is characterized by an extreme aversion towards auditory triggers, such as chewing, tapping, and other repetitive sounds, making ignoring or directing attention away from the sounds nearly impossible. It is not classified as a psychological disorder, but it is associated with significant, reflexive emotional disturbances. Studies have shown that the anterior insular cortex (AIC), an area involved in detecting irregularities or errors, functions differently in people with misophonia, which translates to difficulty in controlling emotional reactions. The present study examines how misophonic reactions might interact with cognition with particular attention to how cognitive demands may exacerbate the emotional response. …
The Four Minute Mile----And The Entire Sport World Is Changed, Paul Olsen
The Four Minute Mile----And The Entire Sport World Is Changed, Paul Olsen
Celebration of Learning
Roger Bannister died recently, and he should be remembered as the man who changed sport----as well as an understanding of human possibility---forever. In 1954 this medical student at Oxford University navigated a world full of both hope and fear, of perceived physical limitation, historical "proof," physical exhaustion, naysayers from all angles including the press, coaches, and fellow athletes. Throughout that journey, Bannister grasped at what he called "rhythms arising from nerve impulses and contracting muscles which interact . . . with a feeling of beauty . . . which might otherwise remain locked away inside ourselves."
Functions Of Ecosystems: Stream Metabolism As An Efficient And Effective Means To Gage The Health And Understand The Interworking Of Urban Streams In A Watershed Of Rock Island, Il, Ryan Johnson, Dr. Kevin Geedey
Functions Of Ecosystems: Stream Metabolism As An Efficient And Effective Means To Gage The Health And Understand The Interworking Of Urban Streams In A Watershed Of Rock Island, Il, Ryan Johnson, Dr. Kevin Geedey
Celebration of Learning
Stream metabolism is a critical functional measure of stream health that integrates physical parameters like slope and discharge, with ecosystem functions like photosynthesis and respiration. Stream metabolism is widely studied; however, urban stream metabolism remains poorly understood. Stream metabolism was measured for five streams ranging from 1st to 5th orders from October 11th to October 18th 2017 and four streams ranging from 1st to 4th order from October 22nd to 25th 2017 located within an approximately 9.3 square kilometer watershed of Rock Island, IL that has an urban to suburban type of …
Effect Sizes In Task-Based Functional Magnetic Resonance Imaging, Tyler Kellett
Effect Sizes In Task-Based Functional Magnetic Resonance Imaging, Tyler Kellett
Celebration of Learning
Task-based functional magnetic resonance imaging (t-fMRI) techniques have changed the way scientists probe the neurological mechanisms underlying behavior. However, there are many problems surrounding t-fMRI especially underpowered studies leading to misleading effect sizes. This study is using a recent large data collection study, the Human Connectome Project, to investigate effect sizes in specific regions of the brain involving working memory. Previous studies have come up with relatively small effect sizes due to small sample sizes and large regions of interest (ROI). This study is concentrated on using more precise ROI called parcels to find larger effect sizes.
A Quantitative Analysis Of The Effects Of Urbanization, Mesophication And Prescribed Burns On Oak Woodlands In The Chicago Metropolitan Area, Chad Populorum
A Quantitative Analysis Of The Effects Of Urbanization, Mesophication And Prescribed Burns On Oak Woodlands In The Chicago Metropolitan Area, Chad Populorum
Celebration of Learning
Urban expansion has had devastating impacts on forest ecosystems, especially within the past century. Human attempts to dominate nature have diminished natural disturbance regimes, which have maintained the biodiversity and historic composition of these ecosystems. Fires have been a prominent force in maintaining the structure of oak, hickory and other heliophytic (sun loving and fire-adapted) forest systems. Human induced fire suppression has led to mesophication across North America. Mesophication is the transition from drier conditions with open canopies to wetter conditions with closed canopies. These new conditions decrease the survival rates of these important species and begin to favor mesophytic …
Animal Agriculture And American Health: The Search For Sustainable Protein, Britta Brinkmann
Animal Agriculture And American Health: The Search For Sustainable Protein, Britta Brinkmann
Biology: Student Scholarship & Creative Works
This study examines the impact large-scale animal agriculture has on the environment. It links the environment and health. The goal is to find protein sources that are sustainable and nutritious in order to replace typical meat and dairy products. A study is proposed to measure the impact of the typical American diet, a vegan diet, an insect-supplemented diet and a diet heavy in seafood.
Do We Own Our Bodies: The Legality Of Body Ownership, Nicole Marie Kasman
Do We Own Our Bodies: The Legality Of Body Ownership, Nicole Marie Kasman
Biology: Student Scholarship & Creative Works
In common times, property ownership has become a hard pressed issue as people try and claim what is rightfully theirs. As medical practices have expanded, the problem of ownership has also extended to the human body and thus questions of ownership arise. It is a common belief that each individual owns their own body but this will be shown to be untrue throughout this paper. Not only that but this paper will also show potential benefits of following through with the body belonging to the common biomass rather than each individual. Court cases such as Moore vs Reagents of the …
Functional Studies Of The E. Coli Proc And A Putative Ortholog Mrub_1345, Maureen Azar, Dr. Lori Scott
Functional Studies Of The E. Coli Proc And A Putative Ortholog Mrub_1345, Maureen Azar, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
This project is part of the Meiothermus ruber genome analysis project, which uses the bioinformatics tools associated with the Guiding Education through Novel Investigation –Annotation Collaboration Toolkit (GENI-ACT) to predict gene function. We investigated the biological function of Escherichia coli and Meiothermus ruber proC genes using the complementation assay. In this research project, mutants of varying severity to the functional state of the protein were developed. The results showed that two or more amino acid deletions reduced or eliminated ProC function. Amino acid substitutions, on the other hand, were not severe enough to impact ProC function. Double and triple mutants …
Ethics And Euthanasia, Nicole Marie Kasman
Ethics And Euthanasia, Nicole Marie Kasman
Biology: Student Scholarship & Creative Works
Illness is never easy to deal with and death is even harder whether it be for the patient, the patient's family, or the physician. Add into that, cases of sever and/or long-term suffering and people can begin wondering what there is to live for. Our animal companions have been able to escape pain via euthanasia for some time now but that same option is not generally available for their human counterparts. A suggested option for our terminally in is physician-assisted suicide. This has been met with a large amount of opposition, partly due to fear of promoting suicide, partly due …
Examination Of Orthologous Genes (Mrub_2518 And B3728, Mrub_2519 And B3727, Mrub_2520 And B3726, Mrub_2521 And B3725) Responsible For Abc Phosphate Transporters In Two Species M. Ruber And E. Coli, Margaret Meyer, Dr. Lori Scott
Examination Of Orthologous Genes (Mrub_2518 And B3728, Mrub_2519 And B3727, Mrub_2520 And B3726, Mrub_2521 And B3725) Responsible For Abc Phosphate Transporters In Two Species M. Ruber And E. Coli, Margaret Meyer, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
In this project we investigated the biological function of the genes b3725, b3726, b3727, b3728 and Mrub_2518, Mrub_2519, Mrub_2520 and Mrub_2521 (KEGG map number 02010). We predict that these genes encode the components of a Phosphate ABC transporter: Orthologous genes Mrub_2518 (DNA coordinates 2565359..2566438) and b3728 encodes the periplasmic phosphate binding component; Orthologous genes Mrub_2519 (DNA coordinates 2566499..2567485) and b3727, and Mrub_2520 (DNA coordinates 2567496..2568326) and b3726 encode for the two transmembrane proteins; Orthologous genes Mrub_2521 (DNA coordinates 2568338..2569159) and b3725 encode for the ATP binding protein within the cytoplasm. Within the two species, M. ruber and E. coli, …
Mrub_1325, Mrub_1326, Mrub_1327, And Mrub_1328 Are Orthologs Of B_3454, B_3455, B_3457, B_3458, Respectively Found In Escherichia Coli Coding For A Branched Chain Amino Acid Atp Binding Cassette (Abc) Transporter System, Bennett Tomlin, Adam Buric, Dr. Lori Scott
Mrub_1325, Mrub_1326, Mrub_1327, And Mrub_1328 Are Orthologs Of B_3454, B_3455, B_3457, B_3458, Respectively Found In Escherichia Coli Coding For A Branched Chain Amino Acid Atp Binding Cassette (Abc) Transporter System, Bennett Tomlin, Adam Buric, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
In this project we investigated the biological function of the genes Mrub_1325, Mrub_1326, Mrub_1327, and Mrub_1328 (KEGG map number 02010). We predict these genes encode components of a Branched Chain Amino Acid ATP Binding Cassette (ABC) transporter: 1) Mrub_1325 (DNA coordinates 1357399-1358130 on the reverse strand) encodes the ATP binding domain; 2) Mrub_1326 (DNA coordinates 1358127-1359899 on the reverse strand) encodes the ATP-binding domain and permease domain; 3) Mrub_1327 (DNA coordinates 1359899-1360930 on the reverse strand) encodes a permease domain; and 4)Mrub_1328 (DNA coordinates 1711022-1712185 on the reverse strand) encodes the substrate binding domain. This system is not predicted to …
Predicted Ortholog Pairs Between E. Coli And M. Ruber Are B3456 And Mrub_2379, B3457 And Mrub_2378, B3456 And Mrub_2374, B3455 And Mrub_2376, And B3454 And Mrub2377, Which Each Code For Components Of A Prokaryotic-Type Abc Transporter For Branched-Chain Amino Acids, Elizabeth Paris, Tony Steinle, Dr. Lori Scott
Predicted Ortholog Pairs Between E. Coli And M. Ruber Are B3456 And Mrub_2379, B3457 And Mrub_2378, B3456 And Mrub_2374, B3455 And Mrub_2376, And B3454 And Mrub2377, Which Each Code For Components Of A Prokaryotic-Type Abc Transporter For Branched-Chain Amino Acids, Elizabeth Paris, Tony Steinle, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
In this project we investigated the biological function of the genes Mrub_2379, Mrub_2378, Mrub_2374, Mrub_2376, and Mrub_2377 (KEGG map number 02010). We predict these genes encode components of a branched-chain amino acid ATP Binding Cassette (ABC) transporter: 1) Mrub_2374 (DNA coordinates 2424832-2425902 on the reverse strand) encodes one permease component (aka transmembrane domain); 2) Mrub_2378 (DNA coordinates 2429525-2430439 on the reverse strand) encodes the second permease component (aka transmembrane domain); 3) Mrub_2376 (DNA coordinates 2427858-2428613 on the reverse strand) encodes one of the ATP-binding domain (aka nucleotide binding domain); 4) Mrub_2377 (DNA coordinates 2428704-2429489 on the reverse strand) …
Mrub_1199 & Mrub_2272 Of Meiothermus Ruber Are Orthologous Genes To The B0262 Gene In Escherichia Coli While Mrub_1200, Mrub_1201, Mrub_2015 & Mrub_2271 Are Not Orthologous To The B0262 Gene Coding For The Iron (Fe3+) Abc Transport System, Kumail Hussain, Dr. Lori Scott
Mrub_1199 & Mrub_2272 Of Meiothermus Ruber Are Orthologous Genes To The B0262 Gene In Escherichia Coli While Mrub_1200, Mrub_1201, Mrub_2015 & Mrub_2271 Are Not Orthologous To The B0262 Gene Coding For The Iron (Fe3+) Abc Transport System, Kumail Hussain, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
In this project we investigated the biological function of the genes Mrub_1199, Mrub_1200, Mrub_1201, Mrub_2015, Mrub_2271 and Mrub_2272 (KEGG map number 02010). We predict these genes encode components of an Iron (Fe3+) ATP Binding Cassette (ABC) transporter: 1) Mrub_1199 (DNA coordinates [1211595-1212572] on the reverse strand) encodes the permease component (aka transmembrane domain); and 2) Mrub_1200 (DNA coordinates [1212612-1214093] on the reverse strand) encodes the ATP-binding domain (aka nucleotide binding domain); and 3) Mrub_1201 (DNA coordinates [1214347-1215309] on the reverse strand) encodes the substrate binding protein (aka the periplasmic component); and Mrub_2015 ( DNA coordinates [2053963-2054949] on the reverse strand) …
Confirmation That Mrub_1751 Is Homologous To E. Coli Xylf, Mrub_1752 Is Homologous To E. Coli Xylh, And Mrub_1753 Is Homologous To E. Coli Xylg, Ben Price, Dr. Lori Scott
Confirmation That Mrub_1751 Is Homologous To E. Coli Xylf, Mrub_1752 Is Homologous To E. Coli Xylh, And Mrub_1753 Is Homologous To E. Coli Xylg, Ben Price, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
In this project we investigated the biological function of the genes Mrub_1751, Mrub_1752 and Mrub_1753 (KEGG map number 02010). We predict these genes encode components of a D-xylose ATP Binding Cassette (ABC) transporter: 1) Mrub_1752 (DNA coordinates 1809004-1810224 on the forward strand) encodes the permease component (aka transmembrane domain), predicted to be an ortholog and 2) Mrub_1753 (DNA coordinates 1810227-1811000 on the forward strand) encodes the ATP-binding domain (aka nucleotide binding domain); and 3) Mrub_1751 (DNA coordinates 1807855-1808892 on the forward strand) encodes the solute binding protein. The ABC-transporter for M. ruber to transport D-xylose is homologous with the transporter …
Mrub_1283, Mrub_1284 And Mrub_1285 Encode For A Glycine/Betaine Abc Transporter And Are Orthologs Of E. Coli Prov, Prow And Prox, Lan Dang, Dr. Lori Scott
Mrub_1283, Mrub_1284 And Mrub_1285 Encode For A Glycine/Betaine Abc Transporter And Are Orthologs Of E. Coli Prov, Prow And Prox, Lan Dang, Dr. Lori Scott
Meiothermus ruber Genome Analysis Project
ABC transporters are essential for cellular transport; contribute to maintain the homeostasis of the cells. Generally, ABC transporters are multi-subunit; contain essential cytoplasmic factors which are critical to ATP hydrolysis activity. In this paper, we would like to take a closer look to Mrub_1283, Mrub_1284 and Mrub_1285, three consecutive genes in Meiothermus ruber genome. We hypothesize that these genes are in the same operon and encode for ABC glycine/ betaine transporters. To confirm our hypothesis, we utilizes several bioinformatics tools to predict the potential function of Mrub_1283, Mrub_1284 and Mrub_1285 and to search for their orthologs in Escherichia coli genome. …