Biological Engineering Commons^™

Accounting For Host Cell Protein Behavior In Anion-Exchange Chromatography, Ryan K. Swanson, Ruo Xu, Daniel S. Nettleton, Charles Glatz

Dan Nettleton

Host cell proteins (HCP) are a problematic set of impurities in downstream processing (DSP) as they behave most similarly to the target protein during separation. Approaching DSP with the knowledge of HCP separation behavior would be beneficial for the production of high purity recombinant biologics. Therefore, this work was aimed at characterizing the separation behavior of complex mixtures of HCP during a commonly used method: anion-exchange chromatography (AEX). An additional goal was to evaluate the performance of a statistical methodology, based on the characterization data, as a tool for predicting protein separation behavior. Aqueous two-phase partitioning followed by two-dimensional electrophoresis …

The Subject Librarian Newsletter, Engineering And Computer Science, Fall 2017, Buenaventura "Ven" Basco

Buenaventura "Ven" Basco

No abstract provided.

Epitaxially Grown Collagen Fibrils Reveal Diversity In Contact Guidance Behavior Among Cancer Cells, Juan Wang, Joseph W. Petefish, Andrew C. Hillier, Ian C. Schneider

Andrew C. Hillier

Invasion of cancer cells into the surrounding tissue is an important step during cancer progression and is driven by cell migration. Cell migration can be random, but often it is directed by various cues such as aligned fibers composed of extracellular matrix (ECM), a process called contact guidance. During contact guidance, aligned fibers bias migration along the long axis of the fibers. These aligned fibers of ECM are commonly composed of type I collagen, an abundant structural protein around tumors. In this paper, we epitaxially grew several different patterns of organized type I collagen on mica and compared the morphology …

Energy Issues Affecting Corn/Soybean Systems: Challenges For Sustainable Production, Douglas L. Karlen, David Archer, Adam Liska, Seth Meyer

Douglas L Karlen

Quantifying energy issues associated with agricultural systems, even for a two-crop corn (Zea mays L.) and soybean (Glycine max [L.] Merr.) rotation, is not a simple task. It becomes even more complicated if the goal is to include all aspects of sustainability (i.e., economic, environmental, and social). This Issue Paper examines energy issues associated with and affecting corn/soybean rotations by first defining the size of the system from both a U.S. and global perspective and then establishing boundaries based on the Farm Bill definition of sustainability. This structured approach is essential to help quantify energy issues within corn/soybean systems that …

Three-Dimensional Confocal Microscopy Indentation Method For Hydrogel Elasticity Measurement, Donghee Lee, Md Mahmudur Rahman, You Zhou, Sangjin Ryu

Md Mahmudur Rahman

No abstract provided.

Test Submission Title, Demo Uwyo

Demo UWyo

Application Of Limited Mixing In The Hele-Shaw Geometry In Fabrication Of Janus Hydrogels, Md Mahmudur Rahman

Md Mahmudur Rahman

It is widely accepted that cells behave differently responding to the stiffness of their extracellular matrix (ECM). Such observations were made by culturing cells on hydrogel substrates of tunable stiffness. However, it was recently proposed that cells may sense how strongly they are tethered to ECM, not the local stiffness of ECM. To investigate both hypotheses, we developed a method to fabricate Janus polyacrylamide (PAAM) gels. We squeeze two drops of different concentrations in the Hele-Shaw geometry to generate radial Stokes flow. When the drops coalesce, limited mixing occurs at the interface due to the narrow confinement, and diffusion normal …

Angle-Tunable Enhanced Infrared Reflection Absorption Spectroscopy Via Grating-Coupled Surface Plasmon Resonance, Joseph W. Petefish, Andrew C. Hillier

Andrew C. Hillier

Surface enhanced infrared absorption (SEIRA) spectroscopy is an attractive method for increasing the prominence of vibrational modes in infrared spectroscopy. To date, the majority of reports associated with SEIRA utilize localized surface plasmon resonance from metal nanoparticles to enhance electromagnetic fields in the region of analytes. Limited work has been performed using propagating surface plasmons as a method for SEIRA excitation. In this report, we demonstrate angle-tunable enhancement of vibrational stretching modes associated with a thin poly(methyl methacrylate) (PMMA) film that is coupled to a silver-coated diffraction grating. Gratings are fabricated using laser interference lithography to achieve precise surface periodicities, …

Electrochemically Modulated Permeability Of Poly(Aniline) And Composite Poly(Aniline)−Poly(Styrenesulfonate) Membranes, D. L. Pile, Y. Zhang, Andrew C. Hillier

Andrew C. Hillier

The influence of oxidation state on the permeability of several probe molecules through conducting polymer membranes comprising composites of poly(aniline) and poly(styrenesulfonate) was examined in aqueous solution. Pure poly(aniline) membranes displayed a characteristic increase in permeability between reduced and half-oxidized states for neutrally charged phenol and negatively charged 4-hydroxybenzenesulfonate. In contrast, positively charged pyridine experienced decreased permeability through the membrane when poly(aniline) was switched from the reduced to the half-oxidized state. This behavior can be explained by a combination of oxidation-induced film swelling and the anion-exchange character of the positively charged membrane. The membrane composition was modified to include a …

Scanning Electrochemical Mapping Of Spatially Localized Electrochemical Reactions Induced By Surface Potential Gradients, Shrisudersan Jayaraman, Erin L. May, Andrew C. Hillier

Andrew C. Hillier

The influence of a surface potential gradient on the location and extent of electrochemical reactions was examined using a scanning electrochemical microscope. A linear potential gradient was imposed on the surface of a platinum-coated indium tin oxide electrode by applying two different potential values at the edges of the electrode. The applied potentials were used to control the location and extent of several electrochemical reactions, including the oxidation of Ru(NH3)62+, the oxidation of H2, and the oxidation of H2 in the presence of adsorbed CO. Scanning electrochemical mapping of these reactions was achieved by probing the feedback current associated with …

Organic Materials And Organic/Inorganic Heterostructures In Atom Probe Tomography, Derk Joester, Andrew C. Hillier, Yi Zhang, Ty J. Prosa

Andrew C. Hillier

Nano-scale organic/inorganic interfaces are key to a wide range of materials. In many biominerals, for instance bone or teeth, outstanding fracture toughness and wear resistance can be attributed to buried organic/inorganic interfaces. Organic/inorganic interfaces at very small length scales are becoming increasingly important also in nano and electronic materials. For example, functionalized inorganic nanomaterials have great potential in biomedicine or sensing applications. Thin organic films are used to increase the conductivity of LiFePO4 electrodes in lithium ion batteries, and solid electrode interphases (SEI) form by uncontrolled electrolyte decomposition. Organics play a key role in dye-sensitized solar cells, organic photovoltaics, and …

Resonance Quenching And Guided Modes Arising From The Coupling Of Surface Plasmons With A Molecular Resonance, Wei-Hsun Yeh, Joseph W. Petefish, Andrew C. Hillier

Andrew C. Hillier

In this paper, we describe experimental and modeling results that illucidate the nature of coupling between surface plasmon polaritons in a thin silver film with the molecular resonance of a zinc phthalocyanine dye film. This coupling leads to several phenomena not generally observed when plasmons are coupled to transparent materials. The increased absorption coefficient near a molecular resonance leads to a discontinuity in the refractive index, which causes branching of the plasmon resonance condition and the appearance of two peaks in the p-polarized reflectance spectrum. A gap exists between these peaks in the region of the spectrum associated with the …

Three-Dimensional Atom Probe Tomography Of Oxide, Anion, And Alkanethiolate Coatings On Gold, Yi Zhang, Andrew C. Hillier

Andrew C. Hillier

We have used three-dimensional atom probe tomography to analyze several nanometer-thick and monomolecular films on gold surfaces. High-purity gold wire was etched by electropolishing to create a sharp tip suitable for field evaporation with a radius of curvature of layer, primarily consisting of water and atmospheric gases, was observed on a fresh tip. This sample exhibited crystalline lattice spacings consistent with the interlayer spacing of {200} lattice planes of bulk gold. A thin oxide layer was created on the gold surface via plasma oxidation, and the thickness and composition of this layer was measured. Clear evidence of a nanometer-thick oxide …

Wavelength Tunable Surface Plasmon Resonance-Enhanced Optical Transmission Through A Chirped Diffraction Grating, Wei-Hsun Yeh, Justin Kleingartner, Andrew C. Hillier

Andrew C. Hillier

We report the construction and testing of a chirped diffraction grating, which serves as a substrate for surface plasmon-enhanced optical transmission. This grating possesses a spatial variation in both pitch and amplitude along its surface. It was created by plasma oxidation of a curved poly(dimethoxysilane) sheet, which resulted in nonuniform buckling along the polymer surface. A gold-coated replica of this surface elicited an optical response that consisted of a series of narrow, enhanced transmission peaks spread over the visible spectrum. The location and magnitude of these transmission peaks varied along the surface of the grating and coincided with conditions where …

High Rate Detection Of Volatile Products Using Differential Electrochemical Mass Spectrometry: Combining An Electrode-Coated Membrane With Hydrodynamic Flow In A Wall-Tube Configuration, Subramanian Venkatachalam, Robert J. Angelici, L. Keith Woo, Andrew C. Hillier

Andrew C. Hillier

We present an experimental system that combines differential electrochemical mass spectrometry with hydrodynamic flow consisting of an impinging jet in a wall-tube configuration. This assembly allows simultaneous detection of electrochemical signals along with monitoring of dissolved gas species using differential electrochemical mass spectrometry under well-defined hydrodynamic conditions and over a wide range of mass transfer rates. The working electrode is deposited directly onto a thin, hydrophobic membrane, which also serves as the inlet to the mass spectrometer. This inlet provides extremely rapid mass detection as well as a high flux of products from the electrode surface into the mass spectrometer. …

Diffraction-Based Tracking Of Surface Plasmon Resonance Enhanced Transmission Through A Gold-Coated Grating, Wei-Hsun Yeh, Joseph W. Petefish, Andrew C. Hillier

Andrew C. Hillier

Surface plasmon resonance enhanced transmission through metal-coated nanostructures represents a highly sensitive yet simple method for quantitative measurement of surface processes and is particularly useful in the development of thin film and adsorption sensors. Diffraction-induced surface plasmon excitation can produce enhanced transmission at select regions of the visible spectrum, and wavelength shifts associated with these transmission peaks can be used to track adsorption processes and film formation. In this report, we describe a simple optical microscope-based method for monitoring the first-order diffracted peaks associated with enhanced transmission through a gold-coated diffraction grating. A Bertrand lens is used to focus the …

Use Of Dispersion Imaging For Grating-Coupled Surface Plasmon Resonance Sensing Of Multilayer Langmuir–Blodgett Films, Wei-Hsun Yeh, Andrew C. Hillier

Andrew C. Hillier

We report grating-coupled surface plasmon resonance measurements involving the use of dispersion images to interpret the optical response of a metal-coated grating. Optical transmission through a grating coated with a thin, gold film exhibits features characteristic of the excitation of surface plasmon resonance due to coupling with the nanostructured grating surface. Evidence of numerous surface plasmon modes associated with coupling at both front (gold/air) and back (gold/substrate) grating interfaces is observed. The influence of wavelength and angle of incidence on plasmon coupling can be readily characterized via dispersion images, and the associated image features can be indexed to matching conditions …

Combined Electrochemical Surface Plasmon Resonance For Angle Spread Imaging Of Multielement Electrode Arrays, Andrew C. Hillier, Chang Hoon Choi

Andrew C. Hillier

A surface plasmon resonance imaging system combined with a multielement electrode array is described. An optical system with shaping optics is used to direct a wedge of light onto a gold-coated sample. The reflected light is detected in the form of an angle-spread image of the surface, with one direction denoting a variable incident angle and the other showing a span of locations along one lateral direction of the sample surface. At the proper incident angle, the angle-spread image shows the complete surface plasmon resonance curve over a span of locations on the surface. This imaging system is combined with …

Surface Plasmon Resonance Enhanced Transmission Of Light Through Gold-Coated Diffraction Gratings, Bipin K. Singh, Andrew C. Hillier

Andrew C. Hillier

Narrow peaks are observed in the transmission spectra of p-polarized light passing through a thin gold film that is coated on the surface of a transparent diffraction grating. The spectral position and intensity of these peaks can be tuned over a wide range of wavelengths by simple rotation of the grating. The wavelengths where these transmission peaks are observed correspond to conditions where surface plasmon resonance occurs at the gold−air interface. Light diffracted by the grating couples with surface plasmons in the metal film to satisfy the resonant condition, resulting in enhanced light transmission through the film. Notably, this phenomenon …

Fabrication Of Low-Cost Paper-Based Microfluidic Devices By Embossing Or Cut-And-Stack Methods, Martin M. Thuo, Ramses V. Martinez, Wen-Jie Lan, Xinyu Liu, Jabulani Barber, Manza B. Atkinson, Dineth Bandarage, Jean-Francis Bloch, George M. Whitesides

Martin M. Thuo

This article describes the use of embossing and “cut-and-stack” methods of assembly, to generate microfluidic devices from omniphobic paper and demonstrates that fluid flowing through these devices behaves similarly to fluid in an open-channel microfluidic device. The porosity of the paper to gases allows processes not possible in devices made using PDMS or other nonporous materials. Droplet generators and phase separators, for example, could be made by embossing “T”-shaped channels on paper. Vertical stacking of embossed or cut layers of omniphobic paper generated three-dimensional systems of microchannels. The gas permeability of the paper allowed fluid in the microchannel to contact …

Trait Selection And Welfare Of Genetically Engineered Animals In Agriculture, Michael Greger

Michael Greger, MD, FACLM

The release of the Final Guidance from the US Food and Drug Administration on the commercialization of genetically engineered animals has sparked renewed discussion over the ethical, consumer, and regulatory implications of transgenesis in animal agriculture. Animal welfare critiques have focused on unexpected phenotypic effects in animals used in transgenic research, rather than on the health and welfare implications of the intended productivity enhancement. Unless breeding goals are redefined to reflect social concerns, the occurrence and magnitude of undesirable side effects may increase and consumer confidence in the nascent technology may be undermined.

Computational Analysis Of Hybrid Norwood Circulation With Distal Aortic Arch Obstruction And Reverse Blalock-Taussig Shunt, Andres Ceballos, I. Ricardo Argueta-Morales, Eduardo Divo, Ruben Osorio, Christopher A. Caldarone, Alain J. Kassab, William M. Decampli

Eduardo Divo

BACKGROUND: The hemodynamics characteristics of the hybrid Norwood (HN) procedure differ from those of the conventional Norwood and are not fully understood. We present a multi-scale model of HN circulation to understand local hemodynamics and effects of aortic arch stenosis and a reverse Blalock-Taussig shunt (RBTS) on coronary and carotid perfusion. METHODS: Four 3-dimensional models of four HN anatomic variants were developed, with and without 90% distal preductal arch stenosis and with and without a 4-mm RBTS. A lumped parameter model of the circulation was coupled to a local 3-dimensional computational fluid dynamics model. Outputs from the lumped parameter model …

Computational Fluid Dynamics In Congenital Heart Disease, William M. Decampli, I. Ricardo Argueta-Morales, Eduardo Divo, Alain J. Kassab

Eduardo Divo

Computational fluid dynamics has been applied to the design, refinement, and assessment of surgical procedures and medical devices. This tool calculates flow patterns and pressure changes within a virtual model of the cardiovascular system. In the field of paediatric cardiac surgery, computational fluid dynamics is being used to elucidate the optimal approach to staged reconstruction of specific defects and study the haemodynamics of the resulting anatomical configurations after reconstructive or palliative surgery. In this paper, we review the techniques and principal findings of computational fluid dynamics studies as applied to a few representative forms of congenital heart disease.

Developing A Small-Footprint Bioengineering Program, Alisha Sarang-Sieminski, Debbie Chachra

Alisha L. Sarang-Sieminski

The field of bioengineering is rapidly changing and expanding to include not only more traditional bioengineering applications (e.g. device-focused areas such as prosthetics, imaging) but also more recent sub-fields and technologies(e.g. more biologically-focused areas such as those enabled by tissue engineering and microfluidics). This rapid change, coupled with the intrinsically interdisciplinary nature of bioengineering, presents a unique challenge to the developers of academic programs, as they need to both select relevant content and strike a balance between depth and breadth. We, the architects of the bioengineering program at the undergraduate-only Franklin W. Olin College of Engineering, which enrolled its first …

Nanoenabled Microelectromechanical Sensor For Volatile Organic Chemical Detection, Chiara Zuniga, Matteo Rinaldi, Samuel M. Khamis, A. T. Johnson, Gianluca Piazza

Matteo Rinaldi

A nanoenabled gravimetric chemical sensor prototype based on the large scale integration of single-stranded DNA (ss-DNA) decorated single-walled carbon nanotubes (SWNTs) as nanofunctionalization layer for aluminum nitride contour-mode resonant microelectromechanical (MEM) gravimetric sensors has been demonstrated. The capability of two distinct single strands of DNA bound to SWNTs to enhance differently the adsorption of volatile organic compounds such as dinitroluene (simulant for explosive vapor) and dymethyl-methylphosphonate (simulant for nerve agent sarin) has been verified experimentally. Different levels of sensitivity (17.3 and 28 KHz µm^2/fg) due to separate frequencies of operation (287 and 450 MHz) on the same die have also …

A Thousand Tiny Pieces: The Federal Circuit’S Fractured Myriad Ruling, Lessons To Be Learned, And The Way Forward, Jonathan R. K. Stroud

Jonathan R. K. Stroud

No abstract provided.

Settling And Bioflocculation Of Two Species Of Algae Used In Wastewater Treatment And Algae Biomass Production, Derek Manheim, Yarrow M. Nelson

Yarrow Nelson

The settling and bioflocculation of two strains of algae were investigated in the laboratory to provide insights to help improve algae settling in large-scale, algae-based wastewater treatment systems with simultaneous algae biofuel production. Energyefficient algae harvesting is a requirement for cost effective production of biofuels from algae, but algae harvesting usually requires energy-intensive methods such as centrifugation, filtration or dissolved air flotation. Bioflocculation using bacteriallyderived exudates is promising, but its use in high-rate algae pond (HRAP) wastewater systems has not yielded consistently reliable settling. To improve our understanding of the complex interactions between mixed cultures of algae and bacteria, the …

Proteomic Analysis Of 17Β-Estradiol Degradation By Stenotrophomonas Maltophilia, Zhongtian Li

Z Li

Microbial degradation plays a critical role in determining the environmental fate of steroid hormones, such as 17β-estradiol (E2). The molecular mechanisms governing the microbial transformation of E2 and its primary degradation intermediate, estrone (E1), are largely unknown. The objective of this study was to identify metabolism pathways that might be involved in microbial estrogen degradation. To achieve the objective, Stenotrophomonas maltophilia strain ZL1 was used as a model estrogen degrading bacterium and its protein expression level during E2/E1 degradation was studied using quantitative proteomics. During an E2 degradation experiment, strain ZL1 first converted E2 to E1 stoichiometrically. At 16 h …

Securing Foreign Oil: A Case For Including Military Operations In The Climate Change Impact Of Fuels, Adam Liska, Richard Perrin

Richard K Perrin

Military operations are major industrial activities that use massive amounts of fuel and materials that significantly contribute to climate change. In this article, we assert that military activity to protect international oil trade is a direct production component for importing foreign oil— as necessary for imports as are pipelines and supertankers—and therefore the greenhouse gas (GHG) emissions from that military activity are relevant to U.S. fuel policies related to climate change. Military security for protection of global maritime petroleum distribution is part of the acquisition process, but in addition, recent Middle Eastern wars may also be related to securing petroleum …

Energy And Climate Implications For Agricultural Nutrient Use Efficiency, Adam J. Liska, Richard K. Perrin

Richard K Perrin

Energy and climate change are beginning to dominate the global political agenda and will drive policy formation that will shape the future of agriculture. Energy issues threaten national security and economic stability, as well as access to low-cost nutrient inputs for agriculture. Climate change has the potential to cause serious disruption to agricultural productivity. Paradoxically, nutrient use in agriculture to increase crop yields has the potential to negatively impact climate. This chapter will discuss recent and future energy and climate trends, the relationships between agricultural nutrient use efficiency and biofuels, and how global land limitations will shape agriculture in the …