Education Commons^™

Adapting Cell-Free Protein Synthesis As A Platform Technology For Education, Grace W. Chu, Max Z. Levine, Nicole E. Gregorio, Javin P. Oza

STAR Program Research Presentations

Cell-free protein synthesis (CFPS) has emerged as an enabling biotechnology for research and biomanufacturing as it allows for the production of protein without the need for a living cell. Applications of CFPS include the construction of libraries for functional genomics and structural biology, the production of personalized medicine, and the expression of virus-like particles. The absence of a cell wall provides an open platform for direct manipulation of the reaction conditions and biological machinery. This project focuses on adapting the CFPS biotechnology to the classroom, making a hands-on bioengineering approach to learning protein synthesis accessible to students grades K-16 through …

Designing An Authentic Behavioral Research Experience In The Classroom Using Siamese Fighting Fish, Betta Splendens, Gianne Souza, Ronald M. Coleman

STAR Program Research Presentations

Recently there have been major shifts in biology education towards emphasizing the teaching of the scientific process to more closely reflect actual scientific practices. Authentic research experiences require the development of many higher order cognitive skills. Creating an authentic research experience that appropriately scaffolds the development of these complex skills while engaging individual student motivation remains challenging in classroom settings. Some common challenges include limited time available for working with large numbers of students, cramped working areas, and limited funding and materials resources. Using the Siamese Fighting Fish, Betta splendens, we have created an economically viable authentic animal behavioral …

Weights And Balances: Integrating Models For Prevention And Response To Southern California Offshore Oil Spills, Carmen Watts Clayton, Amoret Bunn

STAR Program Research Presentations

Licensing offshore oil and gas reserves in the United States waters are overseen by the U.S. Department of the Interior’s Bureau of Safety and Enforcement (BSEE). The licensing application includes planning for any worst-case oil spill scenario between BSEE and the applicant based on lessons learned from historic offshore spills such as the Deepwater Horizon (2010), Exxon Valdez (1989), and the Union Oil Platform Blowout (1969). The process for planning to respond to oil spills involves coordination with multiple agencies, trustees, and stakeholders to ensure that oil spill responses consider multiple factors, including ecologically sensitive species, commercial transportation and fisheries, …

Effects Of Soil Erosion Barriers On Percent Cover And Sediment Size, Michael Perez

STAR Program Research Presentations

Ranching began on Santa Rosa Island in the 1840’s, introducing nonnative megafauna that put selective grazing pressures on endemic species. Dense groves of island oak (Q. tomentella) are aid in sediment deposition and retention. A current restoration effort, involved installing soil erosion barriers, known as wattles, to prevent sediment from being lost upslope and recruit plant growth whose root systems could further stabilize the slope. This experiment was designed to compare percent cover of vegetation growth in areas with and without soil erosion barriers. This was done using the line intercept method (n=42) on three meter transects, measuring …

Chemical Oxygen Demand Reduction Using The Algae Dunaliella Primolecta And Chlorella Vulgaris, Angeles L. Mora, Alejandro Hernandez, Alejandro Calderón-Urrea

STAR Program Research Presentations

Farm industry wastewater is characterized by high organic materials and by high chemical oxygen demand (COD). Farms with large livestock and poultry operations can be a major source of wastewater thus a major concern for effective environmental and industrial management. Effective environmental and industrial management are high in cost therefor biofuels produced from plants have a potential of replacing a portion of fossil fuel consumption with a renewable efficient alternative. Due to California’s water crisis in the recent years, it is questioned if a biological treatment system that uses algal growth to create renewable energy in the form of biodiesel …

Towards Bioregenerative Life Support For Extended Human Exploration: Experiment Development For Testing The Fitness Of Algae In Space, Audrey Fry, R. Craig Everroad, Jessica E. Koehne, Thomas E. Murphy, Brad M. Bebout

STAR Program Research Presentations

Microbes such as algae and bacteria are promising candidates for supporting extended human space travel, as they are robust sources of food, fuel, waste cycling, and oxygen production. Growing microbes on membranes reduces the mass and water demands of a bioreactor system, both of which are important considerations in space travel. The European Modular Cultivation System (EMCS) on the International Space Station (ISS) provides an ideal opportunity to test the effects of microgravity and other aspects of the space environment on algal growth on membranes. This project aims to find optimal growing conditions and measurement technologies that conform to the …

Father Convict Cichlids Bite Intruders More Often In Hot Temperatures, Jesse L. Heckendorf

STAR Program Research Presentations

Convict cichlids (Archocentrus nigrofasciatus) have evolved to be extremely good parents by protecting their brood. Parental care leads to aggressive biting, chasing, and gill flaring to intimidate predators. In this experiment, we show that environmental factors, such as the changing of temperature in this case, affect a male convict cichlid’s aggression toward caring for his offspring when an intruder is introduced. Male convict cichlids attack more in warmer water.

Growing Conditions For Algae, Angeles Mora, Tamar Melkonian, Alejandro Calderon-Urrea

STAR Program Research Presentations

With the growing demands of water in California and the increasing cost of fossil fuels to operate water-cleaning equipment, Algae was cultivated in different concentrations of Nitrogen, Phosphorus, and Potassium (NPK) during different trails to identify the best growing conditions for the removal water contaminates. Before testing algae in waste water, the Algae: Dunaliella Primolecta, Chlorella Vulgaris, and Scenedesmus Dimorphus were cultivated in four different media containing distilled water and plant vitamins. The different mediums used include: Orchid Grow More (20-20-20), Miracle Grow (30-10-10), Murashige & Skoog, and Orchid Bloom Boster (11-35-15). As a result of the investigation, the algae, …

Mother Convict Cichlids Inflict More Bites Upon An Intruder In Hot Temperatures, Jesse L. Heckendorf

STAR Program Research Presentations

Convict cichlids (Archocentrus nigrofasciatus) have developed to be extremely good parents by protecting their brood. Parental care leads to aggressive biting, chasing, and gill flaring to intimidate known predators. In this experiment, we show that environmental factors, such as the changing of temperature in this case, affect a female convict cichlid’s aggression toward caring for her offspring when an intruder is introduced. Females attack more in warmer water.

Jellyfish Identification And Quantification In The San Francisco Estuary, Amalia Borson, Lindsay L. Sullivan, Wim Kimmerer

STAR Program Research Presentations

As potential predators and competitors of plankton-eating fish, jellyfish have the potential to negatively impact fish populations. Jellyfish were collected weekly with plankton tows from the RombergTiburonCenterpier in Tiburon, CA. Since some jellyfish were too small to identify, one tow was collected and preserved to record abundances, and a second tow was collected to rear jellyfish until distinguishing characteristics were visible enough for identification. Jellyfish in the preserved tows were then identified, measured, and counted, and their abundance (number m^-3) was calculated. Jellyfish from the second tows were reared in plastic buckets that were lightly bubbled using aquarium …

Juxtaposing Nasa’S Aeronet Aod With Carb Pm Data Over The San Joaquin Valley To Facilitate Multi-Angle Imaging Spectroradiometer (Misr) Pm Pollution Research, John Kanemoto

STAR Program Research Presentations

Airborne particulate matter (PM) has been shown to increase the risk for asthma, chronic bronchitis, cardiopulmonary complications, and respiratory cell membrane damage/infection/leakage. PM levels are currently analyzed from two perspectives: stationary land-based monitoring (LBM) sites and total Aerosol Optical Depth (AOD) atmospheric column measurements. Both perspectives often leave miles of space between measuring locations and will have a continually increasing cost from introducing/maintaining sites. The Multi-angle Imaging SpectroRadiometer (MISR) satellite team hopes to begin investigating/archiving PM levels comprehensively via inputting MISR AOD measurements into a function/model which predicts the amount of ground level PM.

In the future, multivariable spatial correlations …

Fishing For Peptides, Kevin Nguyen, Heather Brewer, Ljiljana Pasa-Tolic

STAR Program Research Presentations

In the field of proteomics, samples come from an unlimited variety of sources depending on what the research goals are. During preparation for analysis by mass spectrometry (MS), there is a need to separate peptides from other molecules used in the digestion process. Solid Phase Extraction (SPE) is a common cleanup step used to capture peptides, allowing the researcher to remove unwanted chemicals (e.g. salts, denaturants, surfactants) which results in a sample that can be effectively analyzed by MS. For our testing procedures we performed an in solution digest of Shewanella oneidensis with trypsin, mimicking the preparation for membrane-bound peptides …

A Genetic Survey Of English Sole Populations In The Salish Sea, Elizabeth S. Gutierrez, Gary A. Winans, Jon Baker, Amanda Cope

STAR Program Research Presentations

This summer I interned at the Northwest Fisheries Science Center in Seattle, WA and participated in NOAA’s Salish Sea Project. The Salish Sea Project’s goal is to identify genetically distinctive groups of species in the Salish Sea that may have unique evolutionary and/or adaptive backgrounds. These findings will allow NOAA to promote and monitor the natural production of species in the Salish Sea, to select representative populations for experimental work regarding pollution, ocean acidification and climate change, to contribute to managing the ecosystem for intra- and inter-species diversity, and to help make informed decisions about adaptive management and marine protected …

Testing The Salinity Tolerance Levels Of Similar Invasive Species Found In The San Francisco Bay, Julia M. Smith, C. Sarah Cohen, Elizabeth Sheets

STAR Program Research Presentations

Testing the salinity tolerance levels of similar invasive species found in the San Francisco Bay

Julia Smith^1,2, Elizabeth Sheets², and C. Sarah Cohen²

¹Department of Teacher Education, California State University, Sacramento ²Department of Biology and Romberg Tiburon Center, San Francisco State University

Three non-indigenous colonial ascidian species, Botrylloides violaceus, Botrylloides diegensis, and Botryllus schlosseri, have become well established in San Francisco Bay. Two species, B. violaceous and B. schlosseri, are globally distributed, and understanding the salinity ranges and tolerances of these successful invaders in their introduced habitats is important for …