Digital Commons Network^™

The Malonate Template: The Key To Unlocking Novel Amino Acids, Thomas Owens

Dissertations

The “Malonate Template” provides access to various amino acids, all from a common intermediate. Herein, demonstrates the use of the malonate template to establish a synthetic route to both 2-thiohistidine and 2-thio-3-N-methyl-histidine from a benzyl methyl malonate derived intermediate. Furthermore, efforts exploiting the applicability of the malonate template for the of both 2-thiohistidine and 2-thio-3-N-methyl-histidine as a suitable alternative to methods previously described by Erdelmeier are described.

The method presented incorporates modifications to the biomimetic pathway described by Erdelmeier for the synthesis of 2-thiohisidine. By exploiting the biomimetic formation of 2-thiohisitidne’s mechanism via mass spectrometry, we …

Lessons From An Iconic Grouper: Sex, Science, And Serendipity, Yvonne J. Sadovy De Mitcheson

Gulf and Caribbean Research

From a common little damselfish and spectacular grouper aggregations, to disappearing reef fishes and the dark side of the international seafood trade, my journey has passed through a fascinating and worrying period of change in the way we view and treat our oceans. Although much of my career has been in the Indo—Pacific, I focus here mainly on my professional ‘roots’ in the Caribbean and on the Nassau Grouper Epinephelus striatus, a species that kept me curious, taught me patience, never to assume and always to stay hopeful. This fish is almost an obsession; why can we not better safeguard …

A Preliminary Assessment Of The Spawning Potential Ratio Of Five Target Species Of The Coastal Gillnet Fishery In Guyana And Suriname, Tomas Willems, Elford Liverpool, Michael Hiwat

Gulf and Caribbean Research

Data—limited stock assessment methods have the potential to positively impact livelihoods of fishermen around the world by providing management recommendations that aim to optimize sustainable yields from fisheries. Some years ago, a novel length— based (LB) method was developed for the assessment of spawning potential ratio (SPR), a measure of the reproductive capacity of fish stocks. We applied the LB—SPR method to 5 important target species of the coastal gillnet fishery in Guyana and Suriname. Nebris microps (Smalleye Croaker; 32% SPR) and Macrodon ancylodon (King Weakfish; 34% SPR) had the highest spawning potential, but remained below the 40% target level …

Jonathan Franco López 1955 – 2023, Angel Moran-Silva, Rafael Chávez-López, Sergio Cházaro-Olvera

Gulf and Caribbean Research

No abstract provided.

Heteroacene-Based Amphiphile As A Molecular Scaffold For Bioimaging Probes, Tharindu A. Ranathunge, Mahesh Loku Yaddehige, Jordan H. Varma, Cameron Smith, Jay Nguyen, Iyanuoluwani Owolabi, Wojciech Kolodziejczyk, Nathan I. Hammer, Glake Hill, Alex Flynt, Davita L. Watkins

Faculty Publications

The challenges faced with current fluorescence imaging agents have motivated us to study two nanostructures based on a hydrophobic dye, 6H-pyrrolo[3,2-b:4,5-b’]bis [1,4]benzothiazine (TRPZ). TRPZ is a heteroacene with a rigid, pi-conjugated structure, multiple reactive sites, and unique spectroscopic properties. Here we coupled TRPZ to a tert-butyl carbamate (BOC) protected 2,2-bis(hydroxymethyl)propanoic acid (bisMPA) dendron via azide-alkyne Huisgen cycloaddition. Deprotection of the protected amine groups on the dendron afforded a cationic terminated amphiphile, TRPZ-bisMPA. TRPZ-bisMPA was nanoprecipitated into water to obtain nanoparticles (NPs) with a hydrodynamic radius that was TRPZ-PG was encapsulated in pluronic-F127 (Mw …

Listeria Monocytogenes Response To Anaerobic Environments, Brandy N. Roberts, Damayanti Chakravarty, J.C. Gardner Iii, Steven C. Ricke, Janet R. Donaldson

Faculty Publications

Listeria monocytogenes is a Gram-positive facultative anaerobic bacterium that is responsible for the disease, listeriosis. It is particularly lethal in pregnant women, the fetus, the elderly and the immunocompromised. The pathogen survives and replicates over a wide range of temperatures (4 to 42 °C), pH, salt and oxygen concentrations. Because it can withstand various environments, L. monocytogenes is a major concern in food processing industries, especially in dairy products and ready-to-eat fruits, vegetables and deli meats. The environment in which the pathogen is exposed can influence the expression of virulence genes. For instance, studies have shown that variations in oxygen …

Life History Metrics Of Wahoo (Acanthocybium Solandri) From The Northern Gulf Of Mexico, Erik T. Lang, Chris A. Levron, Cijii D. Marshall, Brett J. Falterman

Gulf and Caribbean Research

Wahoo (Acanthocybium solandri) are highly sought in recreational and commercial fisheries in the Gulf of Mexico (GOM), yet the harvest of Wahoo is currently unmanaged in the GOM region outside of Florida waters. Life history metrics are critical to stock assessments and science-based management. Between 2014-2017, Louisiana Department of Wildlife and Fisheries (LDWF) biologists collected Wahoo otoliths and ovaries (n=198) from the northern GOM Wahoo recreational fishery based in Venice, LA to estimate life history metrics of age, growth, and maturity. A protocol was developed to section and age the small, fragile otoliths. A 2-parameter Von Bertalanffy growth …

Age-Related Tick Infestation Patterns In Springtime Migratory Passerines, Matthew Dunning

Honors Theses

To test the hypothesis that younger migrants are more prone to arrive at stopover sites on the northern coast of the Gulf of Mexico with ticks than adult migrants, 2177 migratory passerines were screened for ticks at Gulf Coast sites in Texas and Louisiana. Fifty eight (2.7%) were infested with ticks with 28 (1.3%) being young birds and 30 (1.4%) being adult birds. The body condition of the birds was assessed to determine if tick infestation had negative consequences and if the severity of consequences varied between ages. I found no relationship of age with the prevalence of a tick …

Exploring Churn And Alignment Between Retention And Occupational Culture As Perceived By Professional Truck Drivers, Catherine M. Cole

Dissertations

Despite advances in logistics software and increased driver pay, the trucking industry continues a historic wave of human capital risks in the form of driver turnover and driver shortages. Previous efforts to understand the phenomenon of driver turnover rely heavily on supply chain, transportation, and logistics based disciplines. The current study provides a human capital ontology towards understanding professional truck driver perceptions. Within the interpretive framework of pragmatism, the study applied a simultaneous ethnographic and phenomenological research design to explore the phenomenon of churn and professional truck driver perceptions of environmental alignment between trucking industry retention strategies and the occupational …

Comparative Analyses Of Zebrafish Anxiety-Like Behavior Using Conflict-Based Novelty Tests, Elana V. Kysil, Darya A. Meshalkina, Erin E. Frick, David J. Echevarria, Denis B. Rosemberg, Caio Maximino, Monica Gomes Lima, Murilo S. Abreu, Ana C. Giacomini, Leonardo J.G. Barcellos, Cai Song, Allan V. Kalueff

Faculty Publications

Modeling of stress and anxiety in adult zebrafish (Danio rerio) is increasingly utilized in neuroscience research and central nervous system (CNS) drug discovery. Representing the most commonly used zebrafish anxiety models, the novel tank test (NTT) focuses on zebrafish diving in response to potentially threatening stimuli, whereas the light-dark test (LDT) is based on fish scototaxis (innate preference for dark vs. bright areas). Here, we systematically evaluate the utility of these two tests, combining meta-analyses of published literature with comparative in vivo behavioral and whole-body endocrine (cortisol) testing. Overall, the NTT and LDT behaviors demonstrate a generally good cross-test correlation …

Ecological And Phenotypic Factors Influencing The Movement Dynamics Of The Blackspotted Topminnow, Fundulus Olivaceus, Scott Richard Clark

Dissertations

Movement of individuals throughout a landscape is a complex behavior that has important consequences on numerous ecological and evolutionary processes. Perhaps most notably is the relationship between movement and reproduction, as this has implicit ramifications on individual fitness and consequently, population level processes. Although this relationship has been theoretically and empirically demonstrated across a number of animal taxa, its role in fishes remains understudied and largely unknown. Using a series of outdoor mesocosms, in combination with a field study, I employed passive integrated transponder (PIT) tags to experimentally assess the sex-specific movement dynamics of a small-bodied, sexually-dimorphic stream fish, the …

The Confluence Of Philosophy And Biology: An Excavation Of Philosophical Issues In Molecular And Developmental Biology, Patrick Johnson Mendie, Emmanuel Bassey Eyo (Ph.D)

Journal of Health Ethics

Philosophical evaluations have played an influential role in the growth and development of molecular and developmental biology to ensure that every individual is born healthy, born wanted and has the privilege to fulfil his or her potentials for a life free from disease and disability. This is why it becomes necessary for biologists to carefully understand human genes, evolution, cells and general human anatomy to fulfil this project. During this process, they are faced with challenges where they also lack the foundation on how to solve them. This challenge gave birth to a philosophical excavation of molecular and developmental biology. …

Rangia Cuneata Clam Decline In Lake Pontchartrain From 2001 To 2014 Due To An El Niño Southern Oscillation Shift Coupled With A Period Of High Hurricane Intensity And Frequency, Michael A. Poirrier, Claire E. Caputo

Gulf and Caribbean Research

The clam, Rangia cuneata, occurs in low salinity zones of Atlantic and Gulf of Mexico estuaries. Prior to 2001, it was abundant in Lake Pontchartrain, a large and shallow oligohaline estuary, located north of New Orleans. However, abundance abruptly decreased by 96% after an extreme drought from an El Niño Southern Oscillation (ENSO) shift (1998-2000). Stable higher salinities resulted in the establishment of higher salinity communities. The hooked mussel, Ischadium recurvum, increased abruptly and colonized live R. cuneata. Competition from I. recurvum and the R. cuneata decline occurred at the end of the drought, despite a decrease …

Analysis Of Post-Cranial Traits For The Assessment Of Biological Distance Among Temporally Distinct New World Populations Of African Descent, Claire Marie Dansereau

Master's Theses

This investigation examines change in post-cranial osteometric markers in temporally distinct New World populations of African ancestry: Newton Plantation series (17th-19th century Barbados; N = 16); two subsamples from the Hamann-Todd (HT) series (U.S.) based on birth year, 1865-1900 (N = 66) and 1901-1915 (N = 62); and the Forensic Databank Collection (FDB) (20th century U.S.; N = 137). It was anticipated that individuals from Newton would exhibit less admixture than those from H-T or FDB. They were also predicted to demonstrate greater skeletal robusticity due to mechanical loading. Additionally, it was expected that stature would increase over time due …

What Is Known About Species Richness And Distribution On The Outer-Shelf South Texas Banks?, Harriet L. Nash, Sharon J. Furiness, John W. Tunnell Jr.

Gulf and Caribbean Research

The outer-shelf South Texas Banks, also known as the snapper banks, are known by fishermen to be excellent fishing grounds. However, few scientific studies have been conducted to describe the ecology of these uncommon but distinctive habitats. This paper describes results of a literature review and an assessment to determine what is known about the biota of the South Texas Banks and to assist in developing renewed interest and focus on these topographic highs. The outer-shelf South Texas Banks include relict coralgal reefs and relict barrier islands, and we also include data for a nearshore site, which is geographically and …

Impacts Of Upstream Drought And Water Withdrawals On The Health And Survival Of Downstream Estuarine Oyster Populations, Laura E. Petes, Alicia J. Brown, Carley R. Knight

Faculty Publications

Increases in the frequency, duration, and severity of regional drought pose major threats to the health and integrity of downstream ecosystems. During 2007-2008, the U.S. southeast experienced one of the most severe droughts on record. Drought and water withdrawals in the upstream watershed led to decreased freshwater input to Apalachicola Bay, Florida, an estuary that is home to a diversity of commercially and ecologically important organisms. This study applied a combination of laboratory experiments and field observations to investigate the effects of reduced freshwater input on Apalachicola oysters. Oysters suffered significant disease-related mortality under high-salinity, drought conditions, particularly during the …

Spiders Of Riparian Communities In The Cockscomb Basin Wildlife Sanctuary, Belize, Megan Chevis

Honors Theses

Currently there is little literature on what arachnids inhabit the tropics of Central America, especially within the country of Belize. This study aimed to find which spider species are found in riparian areas within the Cockscomb Basin Wildlife Sanctuary in central Belize and to distinguish trends among spiders and the microhabitats in which they live. Nocturnal samples were predicted to have greater diversity than diurnal samples at all sites. Pisauridae, Salticidae, and Lycosidae were predicted to be the most common spider families collected. Specimens were collected from three riparian sites located on trails within Cockscomb. Diurnal and nocturnal samples were …

Synthesis, Characterisation, And Preliminary In Vitro Studies Of Vanadium(Iv) Complexes With A Schiff Base And Thiosemicarbazones As Mixed Ligands, Nerissa A. Lewis, Fange Liu, Luke Seymour, Anthony Magnusen, Travis R. Erves, Jessa Faye Arca, Floyd A. Beckford, Ramaiyer Venkatraman, Antonio González-Sarrías, Frank R. Fronczek, Don G. Vanderveer, Navindra P. Seeram, Aimin Liu, William L. Jarrett, Alvin A. Holder

Faculty Publications

[VO(sal‐L‐tryp)(H₂O)] (1, sal‐L‐tryp = N‐salicylidene‐L‐tryptophanate) was used as a precursor to produce the new complexes [VO(sal‐L‐tryp)(MeATSC)]·1.5C₂H₅OH [2, MeATSC = 9‐Anthraldehyde‐N(4)‐methylthiosemicarbazone], [VO(sal‐L‐tryp)(N‐ethhymethohcarbthio)]·H₂O [3, N‐ethhymethohcarbthio = (E)‐N‐ethyl‐2‐(4‐hydroxy‐3‐methoxybenzylidene)hydrazinecarbothioamide] and [VO(sal‐L‐tryp)(acetylethTSC)]·C₂H₅OH {4, acetylethTSC = (E)‐N‐ethyl‐2‐[1‐(thiazol‐2‐yl)ethylidene]hydrazinecarbothioamide} by reaction with the respective thiosemicarbazone. The chemical and structural properties of these ligands and complexes were characterised by elemental analysis, ESI‐MS, FTIR, UV/Vis, ESR and ¹H and …

Chemical, Biological, And Preliminary In Vitro Studies Of Novel Vanadium(Iv) Complexes With Schiff Bases And Thiosemicarbazone Ligands, Nerissa Abigail Lewis

Master's Theses

9-Anthraldehyde-N(4)-methylthiosemicarbazone (MeATSC), potassium (E)-2-(2-hydroxybenzylideneamino)-3-(1H-indol-3-yl)propanoate (K[(Sal-L-tryp)] and 2-(2-hydroxybenzylamino)-3-(1H-indol-3-yl)propanoic acid (the reduced Schiff base) were prepared using known synthetic procedures. Two novel thiosemicarbazone ligands, (E)-N-ethyl-2-(4-hydroxy-3-methoxybenzylidene)hydrazinecarbothioamide (N-Ethhymethohcarbthio) and (E)-N-ethyl-2-(1-(thiazol-2-yl)ethylidene)hydrazinecarbothioamide (acetylethTSC), were also prepared. All ligands were characterized by FT IR and electrochemistry. N-Ethhymethohcarbthio were characterized by elemental analysis whereas the reduced Schiff base and K[(Sal-L-tryp)] were characterized by ESI MS. X-ray crystallography was also used to characterize acetylethTSC. The ligands were then reacted with [VO(Sal-L-tryp)(H2O)] (1) (Sal-L-tryp = N-salicylidene-L-tryptophanate) to produce the …

Changes In Perceived Self-Efficacy And Attitude Toward Science And Teaching Science In Elementary School, Betsy Ann Sullivan

Dissertations

This study was developed in an effort to ascertain if a proposed biological laboratory curriculum as developed and modeled by the instructor would affect the attitudes and perceived self-efficacy towards science, science teaching and ability to learn science of pre-service elementary teachers. Self-regulated learning (SRL) strategies were incorporated as the variation. Attitudinal topics investigated were the perceived ability to learn science and to teach science.

Students in one biology for non-science majors' biology laboratory class at the University of Southern Mississippi participated in this case study. The group participated in the modified laboratory section which utilized SRL activities, including reflections …

Analysis Of Common And Specific Mechanisms Of Liver Function Affected By Nitrotoluene Compounds, Youping Deng, Sharon A. Meyer, Xin Guan, Barbara Lynn Escalon, Junmei Ai, Mitchell S. Wilbanks, Ruth Welti, Natàlia Garcia-Reyero, Edward J. Perkins

Faculty Publications

Background: Nitrotoluenes are widely used chemical manufacturing and munitions applications. This group of chemicals has been shown to cause a range of effects from anemia and hypercholesterolemia to testicular atrophy. We have examined the molecular and functional effects of five different, but structurally related, nitrotoluenes on using an integrative systems biology approach to gain insight into common and disparate mechanisms underlying effects caused by these chemicals.

Methodology/Principal Findings: Sprague-Dawley female rats were exposed via gavage to one of five concentrations of one of five nitrotoluenes [2,4,6-trinitrotoluene (TNT), 2-amino-4,6-dinitrotoluene (2ADNT) 4-amino-2,6-dinitrotoulene (4ADNT), 2,4-dinitrotoluene (2,4DNT) and 2,6-dinitrotoluene (2,6DNT)] with necropsy …

Populations Of The Gorgonian Genus Leptogorgia At Two Jetties In The Northwestern Gulf Of Mexico, Emily A. Williamson, Kevin B. Strychar, Kim Withers

Gulf of Mexico Science

No abstract provided.

Observations At A Multispecies Parrotfish (Scaridae) Spawning Aggregation Site At Bermuda With Notes On The Predation Behavior Of Black Grouper (Mycteroperca Bonaci), Brian E. Luckhurst

Gulf and Caribbean Research

The objective of the present study was to describe the spawning behavior of three different species of parrotfishes at the same spawning aggregation site with detailed timing sequences. In addition, observations of other species known to form resident spawning aggregations (i.e., surgeonfishes) and the predatory behavior of black grouper (Mycteroperca bonaci) at this aggregation site are included.

A New Approach To Construct Pathway Connected Networks And Its Application In Dose Responsive Gene Expression Profiles Of Rat Liver Regulated By 2,4dnt, Sudhir Chowbina, Youping Deng, Junmei Ai, Xiaogang Wu, Xin Guan, Mitchell S. Wilbanks, Barbara Lynn Escalon, Edward J. Perkins, Jake Y. Chen

Faculty Publications

Background: Military and industrial activities have lead to reported release of 2,4-dinitrotoluene (2,4DNT) into soil, groundwater or surface water. It has been reported that 2,4DNT can induce toxic effects on humans and other organisms. However the mechanism of 2,4DNT induced toxicity is still unclear. Although a series of methods for gene network construction have been developed, few instances of applying such technology to generate pathway connected networks have been reported.

Results: Microarray analyses were conducted using liver tissue of rats collected 24h after exposure to a single oral gavage with one of five concentrations of 2,4DNT. We observed …

2k09 And Thereafter: The Coming Era Of Integrative Bioinformatics, Systems Biology And Intelligent Computing For Functional Genomics And Personalized Medicine Research, Jack Y. Yang, Andrzej Niemierko, Ruzena Bajcsy, Dong Xu, Brian D. Athey, Aidong Zhang, Okan K. Ersoy, Guo-Zheng Li, Mark Borodovsky, Joe C. Zhang, Hamid R. Arabnia, Youping Deng, A. Keith Dunker, Yunlong Liu, Arif Ghafoor

Faculty Publications

Significant interest exists in establishing synergistic research in bioinformatics, systems biology and intelligent computing. Supported by the United States National Science Foundation (NSF), International Society of Intelligent Biological Medicine (http://www.ISIBM.org), International Journal of Computational Biology and Drug Design (IJCBDD) and International Journal of Functional Informatics and Personalized Medicine, the ISIBM International Joint Conferences on Bioinformatics, Systems Biology and Intelligent Computing (ISIBM IJCBS 2009) attracted more than 300 papers and 400 researchers and medical doctors world-wide. It was the only inter/multidisciplinary conference aimed to promote synergistic research and education in bioinformatics, systems biology and intelligent computing. The conference committee …

Estación De Investigaciones Marinas El Carmen, Universidad Nacional Autónoma De México, Elva Escobar Briones, Raymundo Lecuanda

Gulf of Mexico Science

No abstract provided.

Heterologous Expression Studies Of Saccharomyces Cerevisiae Reveal Two Distinct Trypanosomatid Caax Protease Activities And Identify Their Potential Targets, David Z. Mokry, Surya P. Manandhar, Kristen A. Chicola, George M. Santangelo, Walter K. Schmidt

Faculty Publications

The CaaX tetrapeptide motif typically directs three sequential posttranslational modifications, namely, isoprenylation, proteolysis, and carboxyl methylation. In all eukaryotic systems evaluated to date, two CaaX proteases (Rce1 and Ste24/Afc1) have been identified. Although the Trypanosoma brucei genome also encodes two putative CaaX proteases, the lack of detectable T. brucei Ste24 activity in trypanosome cell extracts has suggested that CaaX proteolytic activity within this organism is solely attributed to T. brucei Rce1 (J. R. Gillespie et al., Mol. Biochem. Parasitol. 153: 115-124. 2007). In this study, we demonstrate that both T. brucei Rce1 and T. brucei Ste24 are enzymatically active when …

Abundance And Distribution Of Two Species Of Squilla (Crustacea: Stomatopoda: Squillidae) In The Northern Gulf Of Mexico, Jennifer L. Wortham

Gulf and Caribbean Research

Stomatopods (mantis shrimps) are predatory benthic crustaceans. Mantis shrimp in the genus Squilla are frequent bycatch animals unintentionally collected in conjunction with the shrimp fishery in the Gulf of Mexico (GOM). Their carcasses are discarded instead of being retained for human consumption, fish meal, or other protein-based food products. The size, depth, salinity, and temperature distributions of these species, as well as their abundance based on gender, were examined to gain biological information that would be necessary if a fishery were to develop in the GOM. I collected samples (n = 2,854) of Squilla empusa and Squilla chydaea in the …

Investigation Of The Summer Kara Sea Circulation Employing A Variational Data Assimilation Technique, G. Panteleev, A. Proshutinsky, M. Kulakov, Dmitri A. Nechaev, W. Maslowski

Faculty Publications

[ 1] The summer circulations and hydrographic fields of the Kara Sea are reconstructed for mean, positive and negative Arctic Oscillation regimes employing a variational data assimilation technique which provides the best fit of reconstructed fields to climatological data and satisfies dynamical and kinematic constraints of a quasi-stationary primitive equation ocean circulation model. The reconstructed circulations agree well with the measurements and are characterized by inflow of 0.63, 0.8, 0.51 Sv through Kara Gate and 1.18, 1.1, 1.12 Sv between Novaya Zemlya and Franz Josef Land, for mean climatologic conditions, positive and negative AO indexes, respectively. The major regions of …

Deep Scattering Layers Of The Northern Gulf Of Mexico Observed With A Shipboard 38-Khz Acoustic Doppler Current Profiler, A.M. Kaltenberg, D.C. Biggs, S.F. Dimarco

Gulf of Mexico Science

Midwater sound-scattering layers containing aggregations of zooplankton and micronekton prey form in response to a trade-off between predator avoidance at depth and optimal foraging near the surface. Although the volume backscatter strength of zooplankton aggregations have been extensively studied in the past, fewer studies have specifically examined other descriptive characteristics of these layers such as depth of layers, timing of migrations, and the presence of secondary scattering layers below the main scattering layer. In the present study, patterns of deep scattering layers (DSLs) were characterized using relative acoustic backscatter from a ship-mounted 38-kHz phased-array, acoustic Doppler current profiler (ADCP) in …