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Louisiana State University

Faculty Publications

2011

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Search For Ultrahigh Energy Neutrinos In Highly Inclined Events At The Pierre Auger Observatory, P. Abreu, M. Aglietta, E. J. Ahn, I. F.M. Albuquerque, D. Allard, I. Allekotte, J. Allen, P. Allison, J. Alvarez Castillo, J. Alvarez-Muñiz, M. Ambrosio, A. Aminaei, L. Anchordoqui, S. Andringa, T. Antičić, A. Anzalone, C. Aramo, E. Arganda, F. Arqueros, H. Asorey, P. Assis, J. Aublin, M. Ave, M. Avenier, G. Avila, T. Bäcker, M. Balzer, K. B. Barber, A. F. Barbosa, R. Bardenet, S. L.C. Barroso, B. Baughman, J. Bäuml Dec 2011

Search For Ultrahigh Energy Neutrinos In Highly Inclined Events At The Pierre Auger Observatory, P. Abreu, M. Aglietta, E. J. Ahn, I. F.M. Albuquerque, D. Allard, I. Allekotte, J. Allen, P. Allison, J. Alvarez Castillo, J. Alvarez-Muñiz, M. Ambrosio, A. Aminaei, L. Anchordoqui, S. Andringa, T. Antičić, A. Anzalone, C. Aramo, E. Arganda, F. Arqueros, H. Asorey, P. Assis, J. Aublin, M. Ave, M. Avenier, G. Avila, T. Bäcker, M. Balzer, K. B. Barber, A. F. Barbosa, R. Bardenet, S. L.C. Barroso, B. Baughman, J. Bäuml

Faculty Publications

The Surface Detector of the Pierre Auger Observatory is sensitive to neutrinos of all flavors above 0.1 EeV. These interact through charged and neutral currents in the atmosphere giving rise to extensive air showers. When interacting deeply in the atmosphere at nearly horizontal incidence, neutrinos can be distinguished from regular hadronic cosmic rays by the broad time structure of their shower signals in the water-Cherenkov detectors. In this paper we present for the first time an analysis based on down-going neutrinos. We describe the search procedure, the possible sources of background, the method to compute the exposure and the associated …

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Measurement Of The Bs0 Lifetime In Fully And Partially Reconstructed Bs0→Ds-(Φπ -)X Decays In P̄P Collisions At √S=1.96tev, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari Dec 2011

Measurement Of The Bs0 Lifetime In Fully And Partially Reconstructed Bs0→Ds-(Φπ -)X Decays In P̄P Collisions At √S=1.96tev, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari

Faculty Publications

We present a measurement of the Bs0 lifetime in fully and partially reconstructed Bs0→Ds-(Φπ -)X decays in 1.3fb -1 collected in pp̄ collisions at √s=1.96TeV by the CDF II detector at the Fermilab Tevatron. We measure τ(Bs0)=1.518±0.041(stat)±0. 027(syst)ps. The ratio of this result and the world average B0 lifetime yields τ(Bs0)/τ(B0)=0.99±0.03, which is in agreement with recent theoretical predictions. © 2011 American Physical Society.

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Directional Limits On Persistent Gravitational Waves Using Ligo S5 Science Data, J. Abadie, B. P. Abbott, R. Abbott, M. Abernathy, T. Accadia, F. Acernese, C. Adams, R. Adhikari, P. Ajith, B. Allen, G. S. Allen, E. Amador Ceron, R. S. Amin, S. B. Anderson, W. G. Anderson, F. Antonucci, M. A. Arain, M. C. Araya, M. Aronsson, K. G. Arun, Y. Aso, S. M. Aston, P. Astone, D. Atkinson, P. Aufmuth, C. Aulbert, S. Babak, P. Baker, G. Ballardin, S. Ballmer, D. Barker, S. Barnum, F. Barone Dec 2011

Directional Limits On Persistent Gravitational Waves Using Ligo S5 Science Data, J. Abadie, B. P. Abbott, R. Abbott, M. Abernathy, T. Accadia, F. Acernese, C. Adams, R. Adhikari, P. Ajith, B. Allen, G. S. Allen, E. Amador Ceron, R. S. Amin, S. B. Anderson, W. G. Anderson, F. Antonucci, M. A. Arain, M. C. Araya, M. Aronsson, K. G. Arun, Y. Aso, S. M. Aston, P. Astone, D. Atkinson, P. Aufmuth, C. Aulbert, S. Babak, P. Baker, G. Ballardin, S. Ballmer, D. Barker, S. Barnum, F. Barone

Faculty Publications

The gravitational-wave (GW) sky may include nearby pointlike sources as well as stochastic backgrounds. We perform two directional searches for persistent GWs using data from the LIGO S5 science run: one optimized for pointlike sources and one for arbitrary extended sources. Finding no evidence to support the detection of GWs, we present 90% confidence level (C.L.) upper-limit maps of GW strain power with typical values between 2-20×10-50strain2Hz-1 and 5-35×10 -49strain2Hz-1sr-1 for pointlike and extended sources, respectively. The latter result is the first of its kind. We also set 90% C.L. limits on the narrow-band root-mean-square GW strain from interesting targets …

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A New Sedimentary Benchmark For The Deccan Traps Volcanism?, Eric Font, Anne Nédélec, Brooks B. Ellwood, José Mirão, Pedro F. Silva Dec 2011

A New Sedimentary Benchmark For The Deccan Traps Volcanism?, Eric Font, Anne Nédélec, Brooks B. Ellwood, José Mirão, Pedro F. Silva

Faculty Publications

The origin of the Cretaceous-Paleogene boundary (KPB) mass extinction is still the center of acrimonious debates by opposing partisans of the bolide impact theory to those who favored a terrestrial origin linked to the Deccan Traps volcanism. Here we apply an original and high-resolution environmental magnetic study of the reference Bidart section, France. Our results show that the KPB is identified by an abrupt positive shift of the magnetic susceptibility (MS), also observed by others at the KPB elsewhere. In addition, an anomalous interval of very low MS, carried by an unknown Cl-bearing iron oxide similar to specular hematite, is …

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Production Of 26al In Stellar Hydrogen-Burning Environments: Spectroscopic Properties Of States In 27si, A. Parikh, K. Wimmer, T. Faestermann, R. Hertenberger, H. F. Wirth, A. A. Chen, J. A. Clark, C. M. Deibel, C. Herlitzius, R. Krücken, D. Seiler, K. Setoodehnia, K. Straub, C. Wrede Dec 2011

Production Of 26al In Stellar Hydrogen-Burning Environments: Spectroscopic Properties Of States In 27si, A. Parikh, K. Wimmer, T. Faestermann, R. Hertenberger, H. F. Wirth, A. A. Chen, J. A. Clark, C. M. Deibel, C. Herlitzius, R. Krücken, D. Seiler, K. Setoodehnia, K. Straub, C. Wrede

Faculty Publications

Model predictions of the amount of the radioisotope 26Al produced in hydrogen-burning environments require reliable estimates of the thermonuclear rates for the 26gAl(p,γ) 27Si and 26mAl(p,γ)27Si reactions. These rates depend upon the spectroscopic properties of states in 27Si within about 1 MeV of the 26gAl + p threshold (Sp = 7463 keV). We have studied the 28Si(3He,α)27Si reaction at 25 MeV using a high-resolution quadrupole-dipole-dipole-dipole magnetic spectrograph. For the first time with a transfer reaction, we have constrained Jπ values for states in 27Si over Ex = 7.0-8.1 MeV through angular distribution measurements. Aside from a few important cases, we …

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Synthesis And Characterization Of Amphiphilic Cyclic Diblock Copolypeptoids From N-Heterocyclic Carbene-Mediated Zwitterionic Polymerization Of N-Substituted N-Carboxyanhydride, Chang Uk Lee, Thomas P. Smart, Li Guo, Thomas H. Epps, Donghui Zhang Dec 2011

Synthesis And Characterization Of Amphiphilic Cyclic Diblock Copolypeptoids From N-Heterocyclic Carbene-Mediated Zwitterionic Polymerization Of N-Substituted N-Carboxyanhydride, Chang Uk Lee, Thomas P. Smart, Li Guo, Thomas H. Epps, Donghui Zhang

Faculty Publications

N-Heterocyclic carbene (NHC)-mediated ring-opening polymerization of N-decyl-N-carboxylanhydride monomer (De-NCA) has been shown to occur in a controlled manner, yielding cyclic poly(N-decylglycine)s (c-PNDGs) with polymer molecular weights (MW) between 4.8 and 31 kg mol -1 and narrow molecular weight distributions (PDI < 1.15). The reaction exhibits pseudo-first-order kinetics with respect to monomer concentration. The polymer MW increases linearly with conversion, consistent with a living polymerization. ESI MS and SEC analyses confirm the cyclic architectures of the forming polymers. DSC and WAXS studies reveal that the c-PNDG homopolymers are highly crystalline with two prominent first-order transitions at 72-79 °C (T m,1) and 166-177 °C (T m,2), which have been attributed to side chain and main chain melting, respectively. A series of amphiphilic cyclic diblock copolypeptoids [i.e., poly(N-methylglycine)-b-poly(N- decylglycine) (c-PNMG-b-PNDG)] with variable molecular weight and composition were synthesized by sequential NHC-mediated polymerization of the corresponding N-methyl-N-carboxyanhydride (Me-NCA) and De-NCA monomers. 1H NMR analysis reveals that adjusting the initial monomer to NHC molar ratio can readily control the block copolymer chain length and composition. Time-lapsed light scattering and cryogenic transmission electron microscopy (cryo-TEM) analyses of c-PNDG-b-PNMG samples showed that the amphiphilic cyclic block copolypeptoids self-assemble into spherical micelles that reorganize into micrometer-long cylindrical micelles with uniform diameter in room temperature methanol over the course of several days. An identical morphological transition has also been noted for the linear analogues, which occurs more rapidly than for the cyclic copolypeptoids. We tentatively attribute this difference to the different crystallization kinetics of the solvophobic block (i.e., PNDG) in the cyclic and linear block copolypeptoids. © 2011 American Chemical Society.

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Search For A Heavy Toplike Quark In Pp̄ Collisions At √S=1.96tev, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari Dec 2011

Search For A Heavy Toplike Quark In Pp̄ Collisions At √S=1.96tev, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari

Faculty Publications

We present the results of a search for pair production of a heavy toplike (t ′) quark decaying to Wq final states using data corresponding to an integrated luminosity of 5.6fb -1 collected by the CDF II detector in pp̄ collisions at √s=1.96TeV. We perform parallel searches for t ′→Wb and t ′→Wq (where q is a generic down-type quark) in events containing a lepton and four or more jets. By performing a fit to the two-dimensional distribution of total transverse energy versus reconstructed t ′ quark mass, we set upper limits on the t ′t ̄′ production cross section …

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Measurement Of Polarization And Search For Cp Violation In B S0→Φφ Decays, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari Dec 2011

Measurement Of Polarization And Search For Cp Violation In B S0→Φφ Decays, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari

Faculty Publications

We present the first measurement of polarization and CP-violating asymmetries in a Bs0 decay into two light vector mesons, B s0→φφ, and an improved determination of its branching ratio using 295 decays reconstructed in a data sample corresponding to 2.9fb -1 of integrated luminosity collected by the CDF experiment at the Fermilab Tevatron collider. The fraction of longitudinal polarization is determined to be f L=0.348±0.041(stat)±0.021(syst), and the branching ratio B(Bs0→φφ)=[2.32±0.18(stat)±0. 82(syst)]×10 -5. Asymmetries of decay angle distributions sensitive to CP violation are measured to be A u=-0.007±0. 064(stat)±0.018(syst) and A v=-0.120±0.064(stat) ±0.016(syst). © 2011 American Physical Society.

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The T2k Experiment, K. Abe, N. Abgrall, H. Aihara, Y. Ajima, J. B. Albert, D. Allan, P. A. Amaudruz, C. Andreopoulos, B. Andrieu, M. D. Anerella, C. Angelsen, S. Aoki, O. Araoka, J. Argyriades, A. Ariga, T. Ariga, S. Assylbekov, J. P.A.M. De André, D. Autiero, A. Badertscher, O. Ballester, M. Barbi, G. J. Barker, P. Baron, G. Barr, L. Bartoszek, M. Batkiewicz, F. Bay Dec 2011

The T2k Experiment, K. Abe, N. Abgrall, H. Aihara, Y. Ajima, J. B. Albert, D. Allan, P. A. Amaudruz, C. Andreopoulos, B. Andrieu, M. D. Anerella, C. Angelsen, S. Aoki, O. Araoka, J. Argyriades, A. Ariga, T. Ariga, S. Assylbekov, J. P.A.M. De André, D. Autiero, A. Badertscher, O. Ballester, M. Barbi, G. J. Barker, P. Baron, G. Barr, L. Bartoszek, M. Batkiewicz, F. Bay

Faculty Publications

The T2K experiment is a long baseline neutrino oscillation experiment. Its main goal is to measure the last unknown lepton sector mixing angle θ13 by observing νe appearance in a νμ beam. It also aims to make a precision measurement of the known oscillation parameters, Δ232+ and sin22θ23, via νμ disappearance studies. Other goals of the experiment include various neutrino cross-section measurements and sterile neutrino searches. The experiment uses an intense proton beam generated by the J-PARC accelerator in Tokai, Japan, and is composed of a neutrino beamline, a near detector complex (ND280), and a far detector (Super-Kamiokande) located 295 …

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The Circumstellar Environment Of R Coronae Borealis: White Dwarf Merger Or Final-Helium-Shell Flash?, Geoffrey C. Clayton, Ben E.K. Sugerman, S. Adam Stanford, B. A. Whitney, J. Honor, B. Babler, M. J. Barlow, K. D. Gordon, J. E. Andrews, T. R. Geballe, Howard E. Bond, O. De Marco, W. A. Lawson, B. Sibthorpe, G. Olofsson, E. Polehampton, H. L. Gomez, M. Matsuura, P. C. Hargrave, R. J. Ivison, R. Wesson, S. J. Leeks, B. M. Swinyard, T. L. Lim Dec 2011

The Circumstellar Environment Of R Coronae Borealis: White Dwarf Merger Or Final-Helium-Shell Flash?, Geoffrey C. Clayton, Ben E.K. Sugerman, S. Adam Stanford, B. A. Whitney, J. Honor, B. Babler, M. J. Barlow, K. D. Gordon, J. E. Andrews, T. R. Geballe, Howard E. Bond, O. De Marco, W. A. Lawson, B. Sibthorpe, G. Olofsson, E. Polehampton, H. L. Gomez, M. Matsuura, P. C. Hargrave, R. J. Ivison, R. Wesson, S. J. Leeks, B. M. Swinyard, T. L. Lim

Faculty Publications

In 2007, R Coronae Borealis (RCrB) went into a historically deep and long decline. In this state, the dust acts like a natural coronagraph at visible wavelengths, allowing faint nebulosity around the star to be seen. Imaging has been obtained from 0.5 to 500 μm with Gemini/GMOS, Hubble Space Telescope/WFPC2, Spitzer/MIPS, and Herschel/SPIRE. Several of the structures around RCrB are cometary globules caused by wind from the star streaming past dense blobs. The estimated dust mass of the knots is consistent with their being responsible for the RCrB declines if they form along the line of sight to the star. …

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Developmental Defects In Mutants Of The Psbp Domain Protein 5 In Arabidopsis Thaliana, Johnna L. Roose, Laurie K. Frankel, Terry M. Bricker Dec 2011

Developmental Defects In Mutants Of The Psbp Domain Protein 5 In Arabidopsis Thaliana, Johnna L. Roose, Laurie K. Frankel, Terry M. Bricker

Faculty Publications

Plants contain an extensive family of PsbP-related proteins termed PsbP-like (PPL) and PsbP domain (PPD) proteins, which are localized to the thylakoid lumen. The founding member of this family, PsbP, is an established component of the Photosystem II (PS II) enzyme, and the PPL proteins have also been functionally linked to other photosynthetic processes. However, the functions of the remaining seven PPD proteins are unknown. To elucidate the function of the PPD5 protein (At5g11450) in Arabidopsis, we have characterized a mutant T-DNA insertion line (SALK_061118) as well as several RNAi lines designed to suppress the expression of this gene. The …

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Quantum Interference Channels, Omar Fawzi, Patrick Hayden, Ivan Savov, Pranab Sen, Mark M. Wilde Dec 2011

Quantum Interference Channels, Omar Fawzi, Patrick Hayden, Ivan Savov, Pranab Sen, Mark M. Wilde

Faculty Publications

The discrete memoryless interference channel is modelled as a conditional probability distribution with two outputs depending on two inputs and has widespread applications in practical communication scenarios. In this paper, we introduce and study the quantum interference channel, a generalization of a two-input, two-output memoryless channel to the setting of quantum Shannon theory. We discuss three different coding strategies and obtain corresponding achievable rate regions for quantum interference channels. We calculate the capacity regions in the special cases of "very strong" and "strong" interference. The achievability proof in the case of "strong" interference exploits a novel quantum simultaneous decoder for …

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Eclipses During The 2010 Eruption Of The Recurrent Nova U Scorpii, Bradley E. Schaefer, Ashley Pagnotta, Aaron P. Lacluyze, Daniel E. Reichart, Kevin M. Ivarsen, Joshua B. Haislip, Melissa C. Nysewander, Justin P. Moore, Arto Oksanen, Hannah L. Worters, Ramotholo R. Sefako, Jaco Mentz, Shawn Dvorak, Tomas Gomez, Barbara G. Harris, Arne A. Henden, Thiam Guan Tan, Matthew Templeton, W. H. Allen, Berto Monard, Robert D. Rea, George Roberts, William Stein, Hiroyuki Maehara, Thomas Richards, Chris Stockdale, Tom Krajci, George Sjoberg, Jennie Mccormick, Mikhail Revnivtsev, Sergei Molkov, Valery Suleimanov, Matthew J. Darnley Dec 2011

Eclipses During The 2010 Eruption Of The Recurrent Nova U Scorpii, Bradley E. Schaefer, Ashley Pagnotta, Aaron P. Lacluyze, Daniel E. Reichart, Kevin M. Ivarsen, Joshua B. Haislip, Melissa C. Nysewander, Justin P. Moore, Arto Oksanen, Hannah L. Worters, Ramotholo R. Sefako, Jaco Mentz, Shawn Dvorak, Tomas Gomez, Barbara G. Harris, Arne A. Henden, Thiam Guan Tan, Matthew Templeton, W. H. Allen, Berto Monard, Robert D. Rea, George Roberts, William Stein, Hiroyuki Maehara, Thomas Richards, Chris Stockdale, Tom Krajci, George Sjoberg, Jennie Mccormick, Mikhail Revnivtsev, Sergei Molkov, Valery Suleimanov, Matthew J. Darnley

Faculty Publications

The eruption of the recurrent nova U Scorpii on 2010 January 28 is now the all-time best observed nova event. We report 36,776 magnitudes throughout its 67 day eruption, for an average of one measure every 2.6 minutes. This unique and unprecedented coverage is the first time that a nova has had any substantial amount of fast photometry. With this, two new phenomena have been discovered: the fast flares in the early light curve seen from days 9-15 (which have no proposed explanation) and the optical dips seen out of eclipse from days 41-61 (likely caused by raised rims of …

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The Effects Of Dust On The Optical And Infrared Evolution Of Sn 2004et, J. Fabbri, M. Otsuka, M. J. Barlow, Joseph S. Gallagher, R. Wesson, B. E.K. Sugerman, Geoffrey C. Clayton, M. Meixner, J. E. Andrews, D. L. Welch, B. Ercolano Dec 2011

The Effects Of Dust On The Optical And Infrared Evolution Of Sn 2004et, J. Fabbri, M. Otsuka, M. J. Barlow, Joseph S. Gallagher, R. Wesson, B. E.K. Sugerman, Geoffrey C. Clayton, M. Meixner, J. E. Andrews, D. L. Welch, B. Ercolano

Faculty Publications

We present an analysis of multi-epoch observations of the Type II-P supernova SN 2004et. New and archival optical spectra of SN 2004et are used to study the evolution of the Hα and [Oi] 6300-Å line profiles between days 259 and 646. Mid-infrared imaging with Michelle on Gemini-North and with all three instruments of the Spitzer Space Telescope was carried out between 2004 and 2010, supplemented by archival Spitzer data. We include Spitzer'warm' mission photometry at 3.6 and 4.5μm obtained on days 1779, 1931 and 2151, along with ground-based and Hubble Space Telescope (HST) optical and near-infrared observations obtained between days …

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Quantum Scalar Field In Quantum Gravity: The Propagator And Lorentz Invariance In The Spherically Symmetric Case, Rodolfo Gambini, Jorge Pullin, Saeed Rastgoo Dec 2011

Quantum Scalar Field In Quantum Gravity: The Propagator And Lorentz Invariance In The Spherically Symmetric Case, Rodolfo Gambini, Jorge Pullin, Saeed Rastgoo

Faculty Publications

We recently studied gravity coupled to a scalar field in spherical symmetry using loop quantum gravity techniques. Since there are local degrees of freedom one faces the "problem of dynamics". We attack it using the "uniform discretization technique". We find the quantum state that minimizes the value of the master constraint for the case of weak fields and curvatures. The state has the form of a direct product of Gaussians for the gravitational variables times a modified Fock state for the scalar field. In this paper we do three things. First, we verify that the previous state also yields a …

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Transient Receptor Potential Channel M4 And M5 In Magnocellular Cells In Rat Supraoptic And Paraventricular Nuclei, R. Teruyama, M. Sakuraba, H. Kurotaki, W. E. Armstrong Dec 2011

Transient Receptor Potential Channel M4 And M5 In Magnocellular Cells In Rat Supraoptic And Paraventricular Nuclei, R. Teruyama, M. Sakuraba, H. Kurotaki, W. E. Armstrong

Faculty Publications

The neurohypophysial hormones, vasopressin (VP) and oxytocin (OT), are synthesised by magnocellular cells in the supraoptic nucleus (SON) and the paraventricular nucleus (PVN) of the hypothalamus. The release of VP into the general circulation from the neurohypophysis increases during hyperosmolality, hypotension and hypovolaemia. VP neurones increase hormone release by increasing their firing rate as a result of adopting a phasic bursting. Depolarising after potentials (DAPs) following a series of action potentials are considered to be involved in the generation of the phasic bursts by summating to plateau potentials. We recently discovered a fast DAP (fDAP) in addition to the slower …

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Repetitive Elements May Comprise Over Two-Thirds Of The Human Genome, A. P.Jason De Koning, Wanjun Gu, Todd A. Castoe, Mark A. Batzer, David D. Pollock Dec 2011

Repetitive Elements May Comprise Over Two-Thirds Of The Human Genome, A. P.Jason De Koning, Wanjun Gu, Todd A. Castoe, Mark A. Batzer, David D. Pollock

Faculty Publications

Transposable elements (TEs) are conventionally identified in eukaryotic genomes by alignment to consensus element sequences. Using this approach, about half of the human genome has been previously identified as TEs and low-complexity repeats. We recently developed a highly sensitive alternative de novo strategy, P-clouds, that instead searches for clusters of high-abundance oligonucleotides that are related in sequence space (oligo "clouds"). We show here that P-clouds predicts >840 Mbp of additional repetitive sequences in the human genome, thus suggesting that 66%-69% of the human genome is repetitive or repeat-derived. To investigate this remarkable difference, we conducted detailed analyses of the ability …

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Alu Pair Exclusions In The Human Genome, George W. Cook, Miriam K. Konkel, James D. Major, Jerilyn A. Walker, Kyudong Han, Mark A. Batzer Dec 2011

Alu Pair Exclusions In The Human Genome, George W. Cook, Miriam K. Konkel, James D. Major, Jerilyn A. Walker, Kyudong Han, Mark A. Batzer

Faculty Publications

Background: The human genome contains approximately one million Alu elements which comprise more than 10% of human DNA by mass. Alu elements possess direction, and are distributed almost equally in positive and negative strand orientations throughout the genome. Previously, it has been shown that closely spaced Alu pairs in opposing orientation (inverted pairs) are found less frequently than Alu pairs having the same orientation (direct pairs). However, this imbalance has only been investigated for Alu pairs separated by 650 or fewer base pairs (bp) in a study conducted prior to the completion of the draft human genome sequence. Results: We …

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Longitudinal Assessment Of Cognitive And Psychosocial Functioning After Hurricanes Katrina And Rita: Exploring Disaster Impact On Middle-Aged, Older, And Oldest-Old Adults, Katie E. Cherry, Jennifer Silva Brown, Loren D. Marks, Sandro Galea, Julia Volaufova, Christina Lefante, L. Joseph Su, David A. Welsh, S. Michal Jazwinski, Meghan B. Allen, Gloria Anderson, Iina E. Antikainen, Arturo M. Arce, Jennifer Arceneaux, Mark A. Batzer, Emily O. Boudreaux, Lauri Byerley, Catherine M. Champagne, Liliana Cosenza, M. Elaine Cress, Jenny Y. Denver, Andy Deutsch, Devon A. Dobrosielski, Rebecca Ellis, Marla J. Erwin, Mark Erwin, Jennifer Fabre, Elizabeth T. Fontham, Madlyn Frisard, Paula Geiselman, Lindsey Goodwin, Tiffany Hall, Scott W. Herke, Jennifer Hayden Dec 2011

Longitudinal Assessment Of Cognitive And Psychosocial Functioning After Hurricanes Katrina And Rita: Exploring Disaster Impact On Middle-Aged, Older, And Oldest-Old Adults, Katie E. Cherry, Jennifer Silva Brown, Loren D. Marks, Sandro Galea, Julia Volaufova, Christina Lefante, L. Joseph Su, David A. Welsh, S. Michal Jazwinski, Meghan B. Allen, Gloria Anderson, Iina E. Antikainen, Arturo M. Arce, Jennifer Arceneaux, Mark A. Batzer, Emily O. Boudreaux, Lauri Byerley, Catherine M. Champagne, Liliana Cosenza, M. Elaine Cress, Jenny Y. Denver, Andy Deutsch, Devon A. Dobrosielski, Rebecca Ellis, Marla J. Erwin, Mark Erwin, Jennifer Fabre, Elizabeth T. Fontham, Madlyn Frisard, Paula Geiselman, Lindsey Goodwin, Tiffany Hall, Scott W. Herke, Jennifer Hayden

Faculty Publications

The authors examined the effects of Hurricanes Katrina and Rita on cognitive and psychosocial functioning in a lifespan sample of adults 6-14 months after the storms. Participants were recruited from the Louisiana Healthy Aging Study. Most were assessed during the immediate impact period and retested for this study. Analyses of pre- and post-disaster cognitive data confirmed that storm-related decrements in working memory for middle-aged and older adults observed in the immediate impact period had returned to pre-hurricane levels in the post-disaster recovery period. Middle-aged adults reported more storm-related stressors and greater levels of stress than the two older groups at …

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Site-Specific Proteolytic Cleavage Of The Amino Terminus Of Herpes Simplex Virus Glycoprotein K On Virion Particles Inhibits Virus Entry, Nithya Jambunathan, Sona Chowdhury, Ramesh Subramanian, Vladimir N. Chouljenko, Jason D. Walker, Konstantin G. Kousoulas Dec 2011

Site-Specific Proteolytic Cleavage Of The Amino Terminus Of Herpes Simplex Virus Glycoprotein K On Virion Particles Inhibits Virus Entry, Nithya Jambunathan, Sona Chowdhury, Ramesh Subramanian, Vladimir N. Chouljenko, Jason D. Walker, Konstantin G. Kousoulas

Faculty Publications

Herpes simplex virus 1 (HSV-1) glycoprotein K (gK) is expressed on virions and functions in entry, inasmuch as HSV-1(KOS) virions devoid of gK enter cells substantially slower than is the case for the parental KOS virus (T. P. Foster, G. V. Rybachuk, and K. G. Kousoulas, J. Virol. 75:12431-12438, 2001). Deletion of the amino-terminal 68-amino-acid (aa) portion of gK caused a reduction in efficiency and kinetics of virus entry similar to that of the gK-null virus in comparison to the HSV-1(F) parental virus. The UL20 membrane protein and gK were readily detected on double-gradient-purified virion preparations. Immuno-electron microscopy confirmed the …

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Spatiotemporal Computed Tomography Of Dynamic Processes, Anders Kaestner, Beat Münch, Pavel Trtlk, Les Butler Dec 2011

Spatiotemporal Computed Tomography Of Dynamic Processes, Anders Kaestner, Beat Münch, Pavel Trtlk, Les Butler

Faculty Publications

Modern computed tomography (CT) equipment allowing fast 3-D imaging also makes it possible to monitor dynamic processes by 4-D Imaging. Because the acquisition time of various 3-D-CT systems is still in the range of at least milliseconds or even hours, depending on the detector system and the source, the balance of the desired temporal and spatial resolution must be adjusted. Furthermore, motion artifacts will occur, especially at high spatial resolution and longer measuring times. We propose two approaches based on nonsequential projection angle sequences allowing a convenient postacquisition balance of temporal and spatial resolution. Both strategies are compatible with existing …

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Top-Quark Mass Measurement Using Events With Missing Transverse Energy And Jets At Cdf, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari Nov 2011

Top-Quark Mass Measurement Using Events With Missing Transverse Energy And Jets At Cdf, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari

Faculty Publications

We present a measurement of the top-quark mass using a sample of tt̄ events in 5.7fb-1 of integrated luminosity from pp̄ collisions at the Fermilab Tevatron with √s=1.96TeV and collected by the CDF II Detector. We select events having large missing transverse energy, and four, five, or six jets with at least one jet tagged as coming from a b quark, and reject events with identified charged leptons. This analysis considers events from the semileptonic tt̄ decay channel, including events that contain tau leptons. The measurement is based on a multidimensional template method. We fit the data to signal templates …

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Erratum: Search For Bs0→Μ+Μ- And B0→Μ+Μ- Decays With Cdf Ii (Physical Review Letters (2011) 107 (191801)), T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari Nov 2011

Erratum: Search For Bs0→Μ+Μ- And B0→Μ+Μ- Decays With Cdf Ii (Physical Review Letters (2011) 107 (191801)), T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari

Faculty Publications

No abstract provided.

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Measurements Of Branching Fraction Ratios And Cp-Asymmetries In Suppressed B-→D(→K+Π-)K- And B-→D(→K+Π-)Π- Decays, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari Nov 2011

Measurements Of Branching Fraction Ratios And Cp-Asymmetries In Suppressed B-→D(→K+Π-)K- And B-→D(→K+Π-)Π- Decays, T. Aaltonen, B. Álvarez González, S. Amerio, D. Amidei, A. Anastassov, A. Annovi, J. Antos, G. Apollinari, J. A. Appel, A. Apresyan, T. Arisawa, A. Artikov, J. Asaadi, W. Ashmanskas, B. Auerbach, A. Aurisano, F. Azfar, W. Badgett, A. Barbaro-Galtieri, V. E. Barnes, B. A. Barnett, P. Barria, P. Bartos, M. Bauce, G. Bauer, F. Bedeschi, D. Beecher, S. Behari

Faculty Publications

We report the first reconstruction in hadron collisions of the suppressed decays B-→D(→K+π-)K- and B-→D(→K+π-)π-, sensitive to the Cabibbo-Kobayashi-Maskawa phase γ, using data from 7fb-1 of integrated luminosity collected by the CDF II detector at the Tevatron collider. We reconstruct a signal for the B -→D(→K+π-)K- suppressed mode with a significance of 3.2 standard deviations, and measure the ratios of the suppressed to favored branching fractions R(K)=[22.0±8.6(stat) ±2.6(syst)]×10-3, R+(K)=[42.6±13. 7(stat)±2.8(syst)]×10-3, R-(K)=[3. 8±10.3(stat)±2.7(syst)]×10-3 as well as the direct CP-violating asymmetry A(K)=-0.82±0.44(stat)±0.09(syst) of this mode. Corresponding quantities for B-→D(→K +π-)π- decay are also reported. © 2011 American Physical Society.

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Two-Dimensional Infrared Spectral Signature And Hydration Of The Oxalate Dianion, Daniel G. Kuroda, Robin M. Hochstrasser Nov 2011

Two-Dimensional Infrared Spectral Signature And Hydration Of The Oxalate Dianion, Daniel G. Kuroda, Robin M. Hochstrasser

Faculty Publications

Ultrafast vibrational spectra of the aqueous oxalate ion in the region of its carboxylate asymmetric stretch modes show novel relaxation processes. Two-dimensional infrared vibrational echo spectra and the vibrational dynamics obtained from them along with measurements of the anisotropy decay provide a picture in which the localization of the oxalate vibrational excitation onto the carboxylate groups occurs in ∼450 fs. Molecular dynamics simulations are used to characterize the vibrational dynamics in terms of dihedral angle motion between the two carboxylate planes and solvation dynamics. The localization of the oxalate vibrational excitation onto the carboxylates is induced by the fluctuations in …

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Electronic Structure And Energetics Of Tetragonal Srcuo2 And Its High-Pressure Superstructure Phase, Jianwei Wang, Zsolt Rak, Fuxiang Zhang, Rodney C. Ewing, Udo Becker Nov 2011

Electronic Structure And Energetics Of Tetragonal Srcuo2 And Its High-Pressure Superstructure Phase, Jianwei Wang, Zsolt Rak, Fuxiang Zhang, Rodney C. Ewing, Udo Becker

Faculty Publications

First-principles calculations have been used to investigate the electronic structure and energetics of the simple tetragonal SrCuO2 (P4/mmm) and its high-pressure tetragonal superstructure (P4/mmm). Based on the calculations, the high-pressure phase is metastable as compared with the low pressure tetragonal phase, with an energy difference of 0.13eV per SrCuO 2 formula unit. The energy barrier to the transition from the superstructure to the simple tetragonal structure is 0.24eV at 7GPa; thus, high temperatures are required to synthesize the latter. Among the possible structural configurations resulting from the partially occupied oxygen site in the superstructure phase, the most stable structure has …

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Critical Point Symmetries In Deformed Odd-A Nuclei, Yu Zhang, Feng Pan, Yu Xin Liu, J. P. Draayer Nov 2011

Critical Point Symmetries In Deformed Odd-A Nuclei, Yu Zhang, Feng Pan, Yu Xin Liu, J. P. Draayer

Faculty Publications

A scheme that elucidates the nature of critical point symmetries in deformed odd-A nuclei by linking them to critical point symmetries of neighboring even-even nuclei is introduced. Specifically, a new symmetry, called SX(3), is advanced that shows primary characteristics of an assumed strong-coupling limit for odd-A systems. It is found that the SX(3) symmetry can be used to identify the soft collective structures in odd-A system. A preliminary application of the new scheme to describe the lowest positive parity bands of 193Ir is also shown. © 2011 American Physical Society.

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Criteria For The Observation Of Strong-Field Photoelectron Holography, T. Marchenko, Y. Huismans, K. J. Schafer, M. J.J. Vrakking Nov 2011

Criteria For The Observation Of Strong-Field Photoelectron Holography, T. Marchenko, Y. Huismans, K. J. Schafer, M. J.J. Vrakking

Faculty Publications

Photoelectron holography is studied experimentally and computationally using the ionization of ground-state xenon atoms by intense near-infrared radiation. A strong dependence of the occurrence of the holographic pattern on the laser wavelength and intensity is observed, and it is shown that the observation of the hologram requires that the ponderomotive energy Up is substantially larger than the photon energy. The holographic interference is therefore favored by longer wavelengths and higher laser intensities. Our results indicate that the tunneling regime is not a necessary condition for the observation of the holographic pattern, which can be observed under the conditions formally attributed …

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Isobaric Multiplet Mass Equation For A=7 And 8, R. J. Charity, J. M. Elson, J. Manfredi, R. Shane, L. G. Sobotka, Z. Chajecki, D. Coupland, H. Iwasaki, M. Kilburn, J. Lee, W. G. Lynch, A. Sanetullaev, M. B. Tsang, J. Winkelbauer, M. Youngs, S. T. Marley, D. V. Shetty, A. H. Wuosmaa, T. K. Ghosh, M. E. Howard Nov 2011

Isobaric Multiplet Mass Equation For A=7 And 8, R. J. Charity, J. M. Elson, J. Manfredi, R. Shane, L. G. Sobotka, Z. Chajecki, D. Coupland, H. Iwasaki, M. Kilburn, J. Lee, W. G. Lynch, A. Sanetullaev, M. B. Tsang, J. Winkelbauer, M. Youngs, S. T. Marley, D. V. Shetty, A. H. Wuosmaa, T. K. Ghosh, M. E. Howard

Faculty Publications

Deviations from the isobaric multiplet mass equation are presented and discussed for the A=7, T=3/2 quartet and the A=8, T=2 quintet. © 2011 American Physical Society.

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Volovik Effect In A Highly Anisotropic Multiband Superconductor: Experiment And Theory, Y. Wang, J. S. Kim, G. R. Stewart, P. J. Hirschfeld, S. Graser, S. Kasahara, T. Terashima, Y. Matsuda, T. Shibauchi, I. Vekhter Nov 2011

Volovik Effect In A Highly Anisotropic Multiband Superconductor: Experiment And Theory, Y. Wang, J. S. Kim, G. R. Stewart, P. J. Hirschfeld, S. Graser, S. Kasahara, T. Terashima, Y. Matsuda, T. Shibauchi, I. Vekhter

Faculty Publications

We present measurements of the specific heat coefficient γ (C/T) in the low-temperature limit as a function of an applied magnetic field for the Fe-based superconductor BaFe2(As0.7P0.3) 2. We find both a linear regime at higher fields and a limiting square root H behavior at very low fields. The crossover from a Volovik-like √H to a linear field dependence can be understood from a multiband calculation in the quasiclassical approximation assuming gaps with different momentum dependence on the hole- and electronlike Fermi surface sheets. © 2011 American Physical Society.

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