Digital Commons Network^™

Population Dynamics And Future Viability Of The Eastern Massasauga Rattlesnake (Sistrurus Catenatus) In Southwest Michigan, Matthew John Klein

Graduate Theses, Dissertations, and Problem Reports (ETD)

Managing at-risk species or populations requires understanding the demographic and genetic drivers of long-term population trends. The eastern massasauga rattlesnake (Sistrurus catenatus) is a federally threatened species facing multiple interacting threats across its range. Habitat loss from wetland drainage and agricultural land conversion has caused range contractions and geographic isolation of populations. Because remaining populations are often small and widely separated, most are now genetically isolated, threatening their long-term viability. Reversing these declines requires understanding population dynamics, quantifying extinction risk, identifying drivers of long-term viability, and assessing the effects of inbreeding and the potential for genetic rescue to …

Sex, Skulls, And Selection: An Exploration Of Blakely Island's Deer Population And Their Ecology Through Genetic Sex Differentiation Of Juvenile Crania, Blair P. Graves

Honors Projects

As an isolated landmass with no natural predators, Blakely Island serves as an effective study site for the study of evolutionary factors relating to insular populations of large mammals. A disparity in the adult sex ratio of local deer has been observed, but the demographics of juveniles must still be ascertained through genetic methods. This study aims to further research concerning the development of a replicable and non-toxic procedure through which undergraduate students can identify the sex of numerous juvenile deer crania. Specifically, differing decalcification lengths, DNA extraction kit methods, and amelogenin primer sets were evaluated for relative success in …

New Mexico Cooper's Hawk Demographic Study: 2024 Annual Report, Brian A. Millsap Dr., Jay Gedir, Chris Vennum, Fitsum Abadi, Kristin Madden, Kirsten Mcdonnell, Emily Bjerre, Hillary White, Ted Swem, Michael Stewart

New Mexico Cooper’s Hawk: Publications

The 2024 Annual Report for a long-term (2011 -  present) demographic study of Cooper's hawks (Astur cooperii) in Albuquerque, New Mexico.

Tailwater Trout Population Dynamics, Connor Dylan Cunningham

Graduate Theses/Dissertations

Dams have been constructed throughout the world and provide several resources for humans (e.g., flood control, hydropower). These structures heavily alter the upstream and downstream environment. One consequence of these alterations is the creation of “tailwaters”, which can create cold-water habitat via hypolimnetic releases. In the southeast United States these tailwater environments are often managed for the recreational use of nonnative salmonids. The unnatural flow regimes of tailwaters affect the biotic and abiotic conditions and ultimately the dynamic rate functions (i.e., recruitment, growth, mortality) of the fish inhabiting them. As such, the goal of this research is to provide fisheries …

Hidden Markov Model For Identifying Local Variants In Human Genomes Using Simulated Data, Scott Mccallum

Electronic Theses and Dissertations

Identifying adaptive mutations in genetic data is challenging due to the low frequency of occurrence of such events, and because signatures of selection are intertwined with the footprints of various other evolutionary forces that shape our genomes. Even when a larger region appears to be under selection, genomic sites that are linked to adaptive mutations have similar statistical signals, and thus can obfuscate the identification of the actual adaptive mutation. The new method described here uses a Hidden Markov Model that allows for classification of neutral, linked, and sweep (adaptive mutation) genomic sites. This model is general and can be …

Impacts Of Urbanization On Demographics And The Stress Level Of White-Tailed Deer In The Piedmont Of South Carolina, Cameron Bramhall

Graduate Theses

Population demographics and density studies are a common way of determining number of individuals in location. Understanding how many individuals and sex ratios can help estimate total populations for future potential management practices. For white-tailed deer (Odocoileus virginianus), commonly referred to as whitetail deer, like other cervids, having too many or too few individuals in an area can cause issues. Some of the issues that may arise with too many individuals include higher disease potential, and a general lack of resources leading to an increase in competition. As areas that were once habitat for whitetail deer become more and more …

Mark-Recapture Methods In Eastern Diamondback Rattlesnake (Crotalus Adamanteus) Monitoring, Carissa J. Adams

Theses, Dissertations and Capstones

Eastern diamondback rattlesnakes (Crotalus adamanteus; EDB) are an imperiled species native to the Southeastern United States longleaf pine (Pinus palustris) ecosystem. Several markrecapture methods have been used range-wide in hopes of increasing knowledge on their population numbers. I explored the efficacy of two mark-recapture methods (scale cauterization and dorsal head photography) using the Marine Corps Recruit Depot, Parris Island, SC EDB population in this multi-part study. The first method I evaluated was ventral scale branding, which has been widely implemented without knowledge of brand permanence. I classified misidentification errors at capture status (new versus recapture) and …

Changing Fire Regimes And Nuanced Impacts On A Critically Imperiled Species, Jeremy T. Rockweit, Katie M. Dugger, Damon B. Lesmeister, Raymond J. Davis, Alan B. Franklin, J. Mark Higley

United States Department of Agriculture Wildlife Services: Staff Publications

Wildfire activity throughout western North America is increasing which can have important consequences for species persistence. Native species have evolved disturbance-adapted traits that confer resilience to natural disturbance provided disturbances operate within their historical range of variability. This resilience can erode as disturbance regimes change and begin operating outside this range. We assessed wildfire impacts during 1987–2018 on the northern spotted owl, an imperiled species with complex relationships with late and early seral forest in the Pacific Northwest, USA. We analyzed population- and individual-level wildfire impacts across the frequent-fire portion of the owl’s geographic range at two spatial scales and …

Emerging Patterns In Population Structure And Trap Efficacy After Three Years Of A Survey Of Western Painted Turtles (Chrysemys Picta Bellii, Gray, 1830) In Marshall County, South Dakota, Heather L. Waye, Amy C. Dolan, Peter C. Dolan

Biology Publications

Turtles are long-lived and globally declining, but relatively little is known about the natural history of many turtle species. Even amongst relatively well-studied species, there is a paucity of information for some habitats and long-term population trends are lacking. Here we report the results from the first three years of an intended long-term population survey of Western Painted Turtles (Chrysemys picta bellii) in the prairie highlands of the Coteau des Prairies, South Dakota. Turtles were sampled using basking traps, hoop traps, and dip nets. Catch per unit effort varied between years, but not significantly so, and hoop traps …

Tourism‑Supported Working Lands Sustain A Growing Jaguar Population In The Colombian Llanos, Matthew Hyde, Esteban Payán, Jorge Barragan, Diana Stasiukynas, Sanmantha Rincón, William L. Kendall, Jerónimo Rodríguez, Kevin R. Crooks, Stewart W. Breck, Valerie Boron

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding large carnivore demography on human-dominated lands is a priority to inform conservation strategies, yet few studies examine long-term trends. Jaguars (Panthera onca) are one such species whose population trends and survival rates remain unknown across working lands. We integrated nine years of camera trap data and tourist photos to estimate jaguar density, survival, abundance, and probability of tourist sightings on a working ranch and tourism destination in Colombia. We found that abundance increased from five individuals in 2014 to 28 in 2022, and density increased from 1.88 ± 0.87 per 100 km² in 2014 to 3.80 …

Estimating Northern Spotted Owl (Strix Occidentalis Caurina) Pair Detection Probabilities Based On Call-Back Surveys Associated With Long-Term Mark-Recapture Studies, 1993–2018, Katie M. Dugger, Alan B. Franklin, Damon B. Lesmeister, Raymond J. Davis, J. David Wiens, Gary C. White, James D. Nichols, James E. Hines, Charles B. Yackulic, Carl J. Schwarz, Steven A. Ackers, L. Steven Andrews, Larissa L. Bailey, Robin Bown, Jesse Burgher, Kenneth P. Burnham, Peter C. Carlson, Tara Chestnut, Mary M. Conner, Krista E. Dilione, Eric D. Forsman, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, Julianna M. Jenkins, William L. Kendall, David W. Lapmphear, Christopher Mccafferty, Trent L. Mcdonald, Janice A. Reid, Jeremy T. Rockweit, David C. Simon, Stan G. Sovern, James K. Swingle, Heather Wise

United States Department of Agriculture Wildlife Services: Staff Publications

The northern spotted owl (Strix occidentalis caurina; hereinafter NSO) was listed as “threatened” under the Endangered Species Act in 1990 and population declines have continued since that listing. Given the species’ protected status, any proposed activities on Federal lands that might impact NSO require consultation with U.S. Fish and Wildlife Service and part of that consultation often includes surveys to determine presence and occupancy status of the species in the proposed activity area. The objective of this report is to present study-area specific estimates of the probability of detection for NSO pairs from twelve 2-week seasonal survey periods …

Site Fidelity Of Bottlenose Dolphins (Tursiops Truncatus) Using Elemental Analyses And Photo-Identification, Lauren R. Clance

Graduate Theses and Dissertations (2019 - present)

The objective of this study was to determine if bottlenose dolphins (Tursiops truncatus) in Alabama waters acquire location-specific elemental signatures indicative of site fidelity. I measured trace metal concentrations (Chapter II) and stable isotope ratios (Chapter III) in skin from free-ranging dolphins remotely biopsied in Mobile Bay, the northern Gulf of Mexico (Gulf) and eastern Mississippi Sound (EMSS). Elemental findings were corroborated with photo-identification data. I found that dolphins acquired some location-specific elements indicative of site fidelity, with the greatest differences at geographic extremes, particularly relative to salinity. For trace metals, highest concentrations were found in winter, consistent with higher …

Mark-Recapture Study And Habitat Assessment For The Northern Metalmark Butterfly, Calephelis Borealis (Lepidoptera: Riodinidae), Weston J. Henry, Kristian S. Omland, Henry Frye, Wagner L. David

EEB Articles

Background: The northern metalmark (Calephelis borealis), is an exceedingly local, globally rare butterfly that is declining across the Midwestern and Northeastern USA. The principal stressors driving colony losses include afforestation and invasive plants that crowd out its larval hostplant (Packera ovata) and nectar resources.

Aims/Methods: To better understand its declines and guide restoration efforts, we 1) performed a mark-recapture study in Connecticut to document population trends where we were actively managing vegetation; 2) conducted a range-wide survey for evidence of phylogeographic structure, using cytochrome oxidase (CO1); 3) investigated abundance determinants of its larval foodplant, Packera ovata …

An Efficient Method Of Evaluating Multiple Concurrent Management Actions On Invasive Populations, Amy J. Davis, Randy Farrar, Brad Jump, Parker Hall, Travis Guerrant, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Evaluating the efficacy of management actions to control invasive species is crucial for maintaining funding and to provide feedback for the continual improvement of management efforts. However, it is often difficult to assess the efficacy of control methods due to limited resources for monitoring. Managers may view effort on monitoring as effort taken away from performing management actions. We developed a method to estimate invasive species abundance, evaluate management effectiveness, and evaluate population growth over time from a combination of removal activities (e.g., trapping, ground shooting) using only data collected during removal efforts (method of removal, date, location, number of …

Demographic Modeling Of Conservation Strategies For The Yosemite Toad (Anaxyrus Canorus), Corrina Rebecca Kamoroff

Cal Poly Humboldt theses and projects

The Yosemite toad (Anaxyrus canorus) is an anuran species endemic to the Sierra Nevada in California that, like many amphibians globally, has suffered population declines. The documented decline in A. canorus populations across their historic range highlights the need for an effective management strategy to protect the species from future extirpation. For this study, I estimated survival rates of A. canorus using a Cormack-Jolly-Seber model populated with data from a demographic study. I then used a female-only post-birth pulse stochastic Lefkovitch matrix model using vital rates I estimated and from the literature to simulate the effect of different …

Conserving Endangered Black-Footed Ferrets: Biological Threats, Political Challenges, And Lessons Learned, Travis M. Livieri, Steven C. Forrest, Marc R. Matchett, Stewart Breck

United States Department of Agriculture Wildlife Services: Staff Publications

There may be few stories in the annals of wildlife management that are as dramatic as the near demise and comeback of the black-footed ferret (Mustela nigripes). Endemic only to North America, this charming little carnivore found only in the continent’s central grasslands was hardly known to science until the mid-20th century. By then, vast colonies of the prey it depended on for food and shelter, the prairie dog (Cynomys spp.), had been wiped out through disease (sylvatic plague) and an agricultural industry with little tolerance for burrowing and grazing rodents. At its low point, the species’ …

Range-Wide Declines Of Northern Spotted Owl Populations In The Pacific Northwest: A Meta-Analysis, Alan B. Franklin, Katie M. Dugger, Damon B. Lesmeister, Raymond J. Davis, J. David Wiens, Gary C. White, James D. Nichols, James E. Hines, Charles B. Yackulic, Carl J. Schwarz, Steven H. Ackers, L. Steven Andrews, Larissa L. Bailey, Robin Bown, Jesse Burgher, Kenneth P. Burnham, Peter C. Carlson, Tara Chestnut, Mary M. Conner, Krista E. Dilione, Eric D. Forsman, Elizabeth M. Glenn, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, Julianna M. Jenkins, William L. Kendall, David W. Lamphear, Christopher Mccafferty, Trent L. Mcdonald, Janice A. Reid, Jeremy T. Rockweit, David C. Simon, Stan G. Sovern, James K. Swingle, Heather Wise

United States Department of Agriculture Wildlife Services: Staff Publications

The northern spotted owl (Strix occidentalis caurina) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls (Strix varia), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls' geographic range to analyze demographic traits, rates of population change, and occupancy parameters for spotted …

Evaluating Potential Effects Of Solar Power Facilities On Wildlife From An Animal Behavior Perspective, Rachel Y. Chock, Barbara Clucas, Elizabeth K. Peterson, Bradley Blackwell, Daniel T. Blumstein, Kathleen Church, Esteban Fernández-Juricic, Gabriel Francescoli, Alison L. Greggor, Paul Kemp, Gabriela M. Pinho, Peter M. Sanzenbacher, Bruce A. Schulte, Pauline Toni

United States Department of Agriculture Wildlife Services: Staff Publications

Solar power is a renewable energy source with great potential to help meet increasing global energy demands and reduce our reliance on fossil fuels. However, research is scarce on how solar facilities affect wildlife. With input from professionals in ecology, conservation, and energy, we conducted a research-prioritization process and identified key questions needed to better understand impacts of solar facilities on wildlife. We focused on animal behavior, which can be used to identify population responses before mortality or other fitness consequences are documented. Behavioral studies can also offer approaches to understand the mechanisms leading to negative interactions (e.g., collision, singeing, …

Individual And Population Fitness Consequences Associated With Large Carnivore Use Of Residential Development, Heather Johnson, David L. Lewis, Stewart W. Breck

United States Department of Agriculture Wildlife Services: Staff Publications

Large carnivores are negotiating increasingly developed landscapes, but little is known about how such behavioral plasticity influences their demographic rates and population trends. Some investigators have suggested that the ability of carnivores to behaviorally adapt to human development will enable their persistence, and yet, others have suggested that such landscapes are likely to serve as population sinks or ecological traps. To understand how plasticity in black bear (Ursus americanus) use of residential development influences their population dynamics, we conducted a 6-yr study near Durango, Colorado, USA. Using space-use data on individual bears, we examined the influence of use of residential …

Trees, Fungi, Insects: How Host Plant Genetics Builds A Community, Sandra Jeanne Simon

Graduate Theses, Dissertations, and Problem Reports (ETD)

Organisms, such as fungi and insects, can cause millions of acres of agricultural and forest damage, while others provide billions of dollars in ecological services such as education, aesthetic enjoyment, pollination, and gardening. Plant breeding and biotechnology can potentially help establish a balance between the proliferation of detrimental pests and attraction of beneficial insects. Variation in plant physiological and morphological characteristics are extremely important in the ability of host tissues to support many different types of organisms. When that variation is genetically heritable in a plant population, shifts in the underlying genes can have predictable consequences in structuring entire ecosystems. …

Genetic Overview Of The Maya Populations: Mitochondrial Dna Haplogroups, Angélica González-Oliver, Dircé Pineda-Vázquez, Ernesto Garfias-Morales, Isabel De La Cruz-Laina, Luis Medrano-González, Lourdes Márquez-Morfín, Allan Ortega-Muñoz

Human Biology Open Access Pre-Prints

We identified the mitochondrial DNA haplogroups A, B, C and D in 75 present-day Maya individuals, 24 Maya individuals of the colonial period and one pre-Columbian Maya individual from Quintana Roo, Mexico. We examined these data together with those of 21 Maya populations accounting for 647 present-day Maya individuals and 104 ancient Maya individuals. A demographic study based on the analysis of fertility and endogamy was carried out in two modern Maya populations to identify cultural factors that influence the mitochondrial haplogroup genetic diversity. Most present-day and ancient Maya populations show a distribution pattern of mitochondrial haplogroup frequencies A, C, …

Hidden Cost Of Disease In A Free-Ranging Ungulate: Brucellosis Reduces Mid-Winter Pregnancy In Elk, Gavin C. Cotterill, Paul C. Cross, Arthur D. Middleton, Jared D. Rogerson, Brandon M. Scurlock, Johan T. Du Toit

Wildland Resources Faculty Publications

Demonstrating disease impacts on the vital rates of free‐ranging mammalian hosts typically requires intensive, long‐term study. Evidence for chronic pathogens affecting reproduction but not survival is rare, but has the potential for wide‐ranging effects. Accurately quantifying disease‐associated reductions in fecundity is important for advancing theory, generating accurate predictive models, and achieving effective management. We investigated the impacts of brucellosis (Brucella abortus) on elk (Cervus canadensis) productivity using serological data from over 6,000 captures since 1990 in the Greater Yellowstone Ecosystem, USA. Over 1,000 of these records included known age and pregnancy status. Using Bayesian multilevel models, …

Fleas Of The American Pika: Diversity And Biogeography In North America’S Intermountain West, Niyomi Wijewardena

All NMU Master's Theses

American pikas (Ochotona princeps) are small mammals that are widely distributed across North America’s Intermountain West. Previous investigations revealed five geographically distinct mitochondrial lineages within O. princeps associated with different mountain systems of the Intermountain West. In contrast, diversity of endoparasitic helminths of pikas is not structured geographically in the same way. Instead, there are two primary parasite assemblages, one distributed across southwestern pika populations and one found across the northeastern part of the host range. These contrasting patterns suggest that the shared history of pikas and their parasites had different consequences for the evolutionary trajectories of these …

Plant-Microbial Interactions Are Strong Determinants Of Plant Population And Community Dynamics, Yan-Yi Anny Chung 9485698

Biology ETDs

Plant-microbial interactions are ubiquitous and yet the consequences of these interactions on plant population and community dynamics are relatively unknown. Here, we used two different classes of plant-microbial interactions to examine their effects on key plant population and community characteristics such as commonness and rarity, competition and coexistence, as well as community stability.

Vertically-transmitted endophytes had stage-dependent effects on the population growth of two grass species Poa sylvestris and Poa alsodes, and generally increased host population growth rates. However, it was the intrinsic demographic advantage of P. sylvestris that allowed its population to grow at a much faster rate …

Population Dynamics Of The Cotton Rat In Southeastern Virginia, Robert K. Rose, Heather Green Salamone

Virginia Journal of Science

We used monthly live trapping for 2.5 years to evaluate the life-history features of the most common small mammal, Sigmodon hispidus (hispid cotton rat), in an old field at its northern limit of distribution on the Atlantic Coast. Peak densities, achieved in late autumn or early winter, were among the highest recorded for the species and were more typical of geographically marginal populations rather than of central ones. Unlike some other marginal populations, hispid cotton rats in southeastern Virginia did not lose significant body mass over the winter (when few juveniles were present) and survival in winter was not significantly …

Determination Of The Ecological Condition Of Benthic Communities Affected By Polycyclic Aromatic Hydrocarbons In The Elizabeth River, Chesapeake Bay, Usa, Adam M. Webb

Biological Sciences Theses & Dissertations

The Southern Branch of the Elizabeth River, a tributary of Chesapeake Bay, has historically been polluted with hydrocarbon based industrial by-products. My study compared benthic community condition from two locations in the Southern Branch: the subtidal region near Money Point, historically affected by pollution of polycyclic aromatic hydrocarbons (PAHs), to a subtidal region near Blows Creek on the opposite shore that is putatively designated as unimpacted by P AH contamination. Samples from both study sites in the Southern Branch were compared to the benthic community condition of samples from the same habitat type designations collected as part of the Chesapeake …

Variation In The Local Population Dynamics Of The Short-Lived Opuntia Macrorhiza (Cactaceae), Chirakkal V. Haridas, Kathleen H. Keeler, Brigitte Tenhumberg

School of Biological Sciences: Faculty Publications

Spatio-temporal variation in demographic rates can have profound effects for population persistence, especially for dispersal-limited species living in fragmented landscapes. Long-term studies of plants in such habitats help with understanding the impacts of fragmentation on population persistence but such studies are rare. In this work we reanalyzed demographic data from seven years of the short-lived cactus Opuntia macrorhiza var. macrorhiza at five plots in Boulder, Colorado. Previous work combining data from all years and all plots predicted a stable population (deterministic log λ ≈ 0). This approach assumed that all five plots were part of a single population. Since the …

Integrated Assessment Of Biological Invasions, Inés Ibáñez, Jeffrey M. Diez, Luke P. Miller, Julian D. Olden, Cascade J.B. Sorte, Dana M. Blumenthal, Bethany A. Bradley, Carla M. D'Antonio, Jeffrey S. Dukes, Regan I. Early, Edwin D. Grosholz, Joshua J. Lawler

Faculty Publications, Biological Sciences

As the main witnesses of the ecological and economic impacts of invasions on ecosystems around the world, ecologists seek to provide the relevant science that informs managers about the potential for invasion of specific organisms in their region(s) of interest. Yet, the assorted literature that could inform such forecasts is rarely integrated to do so, and further, the diverse nature of the data available complicates synthesis and quantitative prediction. Here we present a set of analytical tools for synthesizing different levels of distributional and/or demographic data to produce meaningful assessments of invasion potential that can guide management at multiple phases …

Friends Or Foes: Interpreting The Relationship Between Two Synoptic Small Mammals In Southeastern Virginia, The Hispid Cotton Rat (Sigmodon Hispidus) And Eastern Harvest Mouse (Reithrodontomys Humulis), Sarah A. Crawford

Biological Sciences Theses & Dissertations

Relatively little is known about the relationship between the hispid cotton rat (Sigmodon hispidus) and the eastern harvest mouse (Reithrodontomys humulis). Literature on these two syntopic genera in other areas of the United States suggests that competition may exist; however, both species seem to be greatly affected by environmental changes, making it difficult to draw any definite conclusions. Live trapping and microhabitat data collected from 2 old fields in Chesapeake, Virginia over a 9-year period were used to assess the biotic and abiotic influences on space use by these two species. Each I-ha plot consisted of 2 live traps placed …

Patterns Of Transience, Sex Bias, And Body Mass In Open-Habitat Rodent Populations, Stephen Edward Rice

Biological Sciences Theses & Dissertations

Rodents are assumed to live their lives in circumscribed (natal) areas with males being more prone to disperse than females and juveniles more prone to disperse than adults. To test these assumptions we examined the initial captures of geographic populations of hispid cotton rat, meadow vole, prairie vole, and marsh rice rat obtained through capture-mark-recapture methods. Capture records were obtained from Kansas and Illinois from long-term studies, and through live-trapping in Chesapeake, Virginia. I evaluated proportions of residents and transients, adults and juveniles, and males and females for significant differences among seasons, years, and geographic locations. The overall body masses …