Digital Commons Network^™

Minimal Separating Sets In Surfaces, Christopher Nelson Aagaard

Dissertations and Theses

Given a connected topolgical space X, we say that L ⊆ X is a minimal separating set if removing L from X gives a disconnected surface, butremoving any proper subset of L leaves the surface connected. We classify which embeddings of topological graphs are minimal separating in an orientable surface X with genus g, and construct a computer program to compute the number of such embeddings, and the number of topological graphs which admit such an embedding for g ≤ 5.

Introduction To The Virtual Special Issue: Mathematics That Underpins Social Issues, Eva Thanheiser, Ami Mamolo

Mathematics and Statistics Faculty Publications and Presentations

This Virtual Special Issue on Mathematics in Society: Exploring the Mathematics that Underpins Social Issues features 13 articles which expand our understanding of how people build, retain, communicate, apply, and comprehend mathematical ideas as they relate to social and societal issues. The focus is on education research that explores the ways in which mathematics and a mathematical worldview can influence choices, on educational, personal and societal levels. We take a broad view and raise questions about what it means to be mathematical in society, and we consider the multifaceted ways in which abilities to derive and interpret information presented mathematically …

Evaluation Of Transplant Benefits With The Us Scientific Registry Of Transplant Recipients By Semiparametric Regression Of Mean Residual Life, Ge Zhao, Yanyuan Ma, Huazhen Lin, Yi Li

Mathematics and Statistics Faculty Publications and Presentations

Kidney transplantation is the most effective renal replacement therapy for end stage renal disease patients. With the severe shortage of kidney supplies and for the clinical effectiveness of transplantation, patient’s life expectancy posttransplantation is used to prioritize patients for transplantation; however, severe comorbidity conditions and old age are the most dominant factors that negatively impact posttransplantation life expectancy, effectively precluding sick or old patients from receiving transplants. It would be crucial to design objective measures to quantify the transplantation benefit by comparing the mean residual life with and without a transplant, after adjusting for comorbidity and demographic conditions. To address …

The Basic Dualism In The World: Object-Oriented Ontology And Systems Theory, Martin Zwick

Systems Science Faculty Publications and Presentations

Graham Harman writes that the “basic dualism in the world lies…between things in their intimate reality and things as confronted by other things.” However, dualism implies irreconcilable difference; what Harman points to is better expressed as a dyad, where the two components imply one another and interact. This article shows that systems theory has long asserted the fundamental character of Harman’s dyad, expressing it as the union of internal structure and external function, which correspond exactly to what Levi Bryant, characterizing Harman’s views, refers to as the intra-ontic and the inter-ontic, respectively. After interpreting Harman’s dyad in terms of the …

Matrix-Free High-Performance Saddle-Point Solvers For High-Order Problems In H (Div), Will Pazner, Tzanio Kolev, Panayot S. Vassilevski

Mathematics and Statistics Faculty Publications and Presentations

This work describes the development of matrix-free GPU-accelerated solvers for high-order finite element problems in . The solvers are applicable to grad-div and Darcy problems in saddle-point formulation, and have applications in radiation diffusion and porous media flow problems, among others. Using the interpolation–histopolation basis (cf. [W. Pazner, T. Kolev, and C. R. Dohrmann, SIAM J. Sci. Comput., 45 (2023), pp. A675–A702]), efficient matrix-free preconditioners can be constructed for the -block and Schur complement of the block system. With these approximations, block-preconditioned MINRES converges in a number of iterations that is independent of the mesh size and polynomial degree. The …

Accretion Of Warm Chondrules In Weakly Metamorphosed Ordinary Chondrites And Their Subsequent Reprocessing, Alex M. Ruzicka, Richard C. Hugo, Jon M. Friedrich, Michael T. Ream

Geology Faculty Publications and Presentations

To better understand chondrite accretion and subsequent processes, the textures, crystallography, deformation, and compositions of some chondrite constituents in ten lithologies of different cluster texture strength were studied in seven weakly metamorphosed (Type 3) and variably shocked ordinary chondrites (Ragland—LL3 S1, Tieschitz—H/L3 S1, NWA 5421—LL3 S2, NWA 5205—LL3 S2, NWA 11905—LL3-5 S3, NWA 5781—LL3 S3, NWA 11351—LL3-6 S4) using optical and electron microscopy and microtomography techniques.

Results support a four-stage model for chondrite formation. This includes 1) limited annealing following collisions during chondrule crystallization and rapid cooling in space prior to accretion, as evidenced by olivine microstructures consistent with dislocation …

Toxicity Of Waterpipe Tobacco Smoking: The Role Of Flavors, Sweeteners, Humectants, And Charcoal, Nada O F Kassem, Robert M. Strongin, Andrea M. Stroup, Marielle C. Brinkman, Ahmad El-Hellani, Hanno C. Erythropel, Arash Etemadi, Maciej L. Goniewicz, Eleanore G. Hansen, Noura O. Kassem, Multiple Additional Authors

Chemistry Faculty Publications and Presentations

Waterpipe tobacco (WPT) smoking is a public health concern, particularly among youth and young adults. The global spread of WPT use has surged since the introduction of pre-packaged flavored and sweetened WPT, which is widely marketed as a safer tobacco alternative. Besides flavorants and sugars, WPT additives include humectants, which enhance the moisture and sweetness of WPT, act as solvents for flavors, and impart smoothness to the smoke, thus increasing appeal to users. In the United States (U.S.), unlike cigarette tobacco flavoring (with the exception of menthol), there is no FDA product standard or policy in place prohibiting sales of …

Synthesis And Computational Studies Of Α- And Δ-Substituted Macrocyclic Europium And Ytterbium Complexes, Delainey Amara Winder

Dissertations and Theses

The uses of macrocyclic lanthanide complexes are vast, with many targeted MRI contrast agents at the forefront of the field. Many of these are ParaCEST agents, which require exchangeable protons accessible on the macrocycle and the slow exchange of coordinated water molecules. The substitution at both the α- and δ-carbon on the amide pendant arm of these macrocyclic lanthanide complexes can lock bulky groups on the δ-carbon to a pseudo-axial position. When the α- and δ-carbons have the same chirality, the bulky group will be pseudo-equatorial, and when the chirality is opposed, the bulky group will be pseudo-axial. By performing …

Oregon State Rank Assessment For Midget Quillwort (Isoetes Minima), Lindsey K. Wise

Institute for Natural Resources Publications

Oregon state conservation status assessment for midget quillwort (Isoetes minima) using NatureServe methodology, 2024.

When Overextended Surface Allocation Turns To Groundwater: A Q Methodology Of Well Users In Oregon’S High Desert, Melissa Haeffner, Janet Cowal, Brandy Walker, Clare Mcclellan

Environmental Science and Management Faculty Publications and Presentations

As legal battles over surface water allocation in Klamath County, Oregon, USA have gained national attention, earning the name “Water Wars,” authorities have been increasingly turning to groundwater to compensate for water shortfalls. This case study aims to identify the nuanced perspectives of household groundwater well users who are affected by groundwater extraction. Using Q methodology, we uncover groundwater well users’ perceptions and to what extent they think water problems are dealt with fairly. We identify four water perspectives that differ in the degree to which respondents prioritize clean water accessibility, industry accountability, individual responsibility for water management, and trust …

Pt-Symmetry-Enabled Stable Modes In A Multicore Fiber, Tamara Gratcheva, Yogesh N. Joglekar, Jay Gopalakrishnan

Mathematics and Statistics Faculty Publications and Presentations

Open systems with balanced gain and loss, described by parity-time (PT -symmetric) Hamiltonians have been deeply explored over the past decade. Most explorations are limited to finite discrete models (in real or reciprocal spaces) or continuum problems in one dimension. As a result, these models do not leverage the complexity and variability of two-dimensional continuum problems on a compact support. Here, we investigate eigenvalues of the Schrödinger equation on a disk with zero boundary condition, in the presence of constant, PT -symmetric, gain-loss potential that is confined to two mirror-symmetric disks. We find a rich variety of exceptional points, re-entrant …

Concolic Testing For Scripting Languages, Zhe Li

Dissertations and Theses

Scripting languages, such as JavaScript and Lua, are becoming more and more popular. They are typically easy to learn and use, making them accessible to a wide range of developers, even those with limited programming experience. Lua, for instance, is a lightweight, efficient, and versatile scripting language. It is designed to be easy to integrate into other systems and is often used as an embedded scripting language in larger applications such as NMap, which is a network scanning tool.

As another example, web front-end development with JavaScript (JS) is a popular choice for developers due to its ability to add …

A Comparison Of Structure, Bonding And Non-Covalent Interactions Of Aryl Halide And Diarylhalonium Halogen-Bond Donors, Nicole Javaly, Theresa M. Mccormick, David R. Stuart

Chemistry Faculty Publications and Presentations

Halogen bonding permeates many areas of chemistry. A wide range of halogen-bond donors including neutral, cationic, monovalent, and hypervalent have been developed and studied. In this work we used density functional theory (DFT), natural bond orbital (NBO) theory, and quantum theory of atoms in molecules (QTAIM) to analyze aryl halogen-bond donors that are neutral, cationic, monovalent and hypervalent and in each series we include the halogens Cl, Br, I, and At. Within this diverse set of halogen-bond donors, we have found trends that relate halogen bond length with the van der Waals radii of the halogen and the non-covalent or …

Generalized Optimal Transport And Mean Field Control Problems For Reaction-Diffusion Systems With High-Order Finite Element Computation, Guosheng Fu, Stanley Osher, Will Pazner, Wuchen Li

Mathematics and Statistics Faculty Publications and Presentations

We design and compute a class of optimal control problems for reaction-diffusion systems. They form mean field control problems related to multi-density reaction-diffusion systems. To solve proposed optimal control problems numerically, we first apply high-order finite element methods to discretize the space-time domain and then solve the optimal control problem using augmented Lagrangian methods (ALG2). Numerical examples, including generalized optimal transport and mean field control problems between Gaussian distributions and image densities, demonstrate the effectiveness of the proposed modeling and computational methods for mean field control problems involving reaction-diffusion equations/systems.

True Contraction Decomposition And Almost Eth-Tight Bipartization For Unit-Disk Graphs, Sayan Bandyapadhyay, William Lochet, Daniel Lokshtanov, Saket Saurabh, Jie Xue

Computer Science Faculty Publications and Presentations

We prove a structural theorem for unit-disk graphs, which (roughly) states that given a set D of n unit disks inducing a unit-disk graph ...

Monitoring Water Meniscus Formation At Nanocontacts With Shear-Force Acousto Near-Field Microscopy, Xiaohua Wang, Rodolfo Fernandez, Theodore Brockman, Kacharat Supichayanggoon, Andres H. La Rosa

Physics Faculty Publications and Presentations

Shear-force acoustic near-field microscopy (SANM) is employed to monitor stochastic formation and post dynamic response of a water meniscus that bridges a tapered gold probe (undergoing lateral oscillations of a few nanometers amplitude at constant frequency) and a flat (gold or silicon oxide) substrate. As the probe further approaches the substrate, its amplitude decreases. Shear forces (of yet unknown precise origin) are typically invoked to explain the apparently pure damping effects affecting the probe's motion. Herein, SANM measurements underscore instead the role of near-field acoustic emission from the water meniscus as an elastic energy dissipation channel involved in shear interactions. …

Preperiodic Points Of Polynomial Dynamical Systems Over Finite Fields, Aaron Andersen, Derek Garton

Mathematics and Statistics Faculty Publications and Presentations

For a prime p, positive integers r,n, and a polynomial f with coefficients in Fpr, let Wp,r,n(f) = fn(Fpr) ∖ fn+1(Fpr). As n varies, the Wp,r,n(f) partition the set of strictly preperiodic points of the dynamical system induced by the action of f on Fpr. In this paper we compute statistics of strictly preperiodic points of dynamical systems induced by unicritical polynomials over finite fields by obtaining effective upper bounds for the proportion of Fpr lying in a given Wp,r,n(f). Moreover, when we generalize our definition of Wp,r,n(f), we obtain both upper and lower bounds for the resulting averages.

Mechanistic Rationale For Ketene Formation During Dabbing And Vaping, Kaelas R. Munger, Killian M. Anreise, Robert P. Jensen, David H. Peyton, Robert M. Strongin

Chemistry Faculty Publications and Presentations

Ketene is one of the most toxic vaping emissions identified to date. However, its high reactivity renders it relatively challenging to identify. In addition, certain theoretical studies have shown that realistic vaping temperature settings may betoo low to produce ketene. Each of these issues is addressed herein. First, an isotopically labeled acetate precursor is used for the identification of ketene with enhanced rigor in vaped aerosols. Second, discrepancies between theoretical and experimental findings are explained by accounting for the effects of aerobic (experimental) versus anaerobic (simulated and theoretical) pyrolysis conditions. This finding is also relevant to explaining the relatively low-temperature …

Impacts Of Stream Habitat Restoration On Macroinvertebrate Assemblages: A Systematic Literature Review, Morgan E. Seitzer

University Honors Theses

Globally, river restoration has become a popular tool for improving the health of a watershed and restoring ecosystem services, but still has significant knowledge gaps. In certain areas and scientific communities, special attention has been given to the response of macroinvertebrates as a measure of restoration success. This systematic literature review aims to highlight and discuss the patterns in studies that have comparable before-and-after restoration data on macroinvertebrates after reconnecting stream channels to their floodplains. Macroinvertebrate sampling is a simple if not time-consuming task that can reveal important data about habitat quality. Because they serve as an important food source …

Evaluation Of Inner Products Of Implicitly Defined Finite Element Functions On Multiply Connected Planar Mesh Cells, Jeffrey S. Ovall, Samuel E. Reynolds

Mathematics and Statistics Faculty Publications and Presentations

In recent years, there has been significant interest in the development of finite element methods defined on meshes that include rather general polytopes and curvilinear polygons. In the present work, we provide tools necessary to employ multiply connected mesh cells in planar domains, i.e., cells with holes, in finite element computations. Our focus is efficient evaluation of the 𝐻1𝐻1 semi-inner product and 𝐿2𝐿2 inner product of implicitly defined finite element functions of the types arising in boundary element based finite element methods and virtual element methods. Such functions are defined as solutions of Poisson problems having a polynomial source term …

Microplastic Pollution In Stormwater: Preliminary Findings From The Oregon Coast, Jazmine Compton

University Honors Theses

Microplastics have become ubiquitous in marine environments and pose a risk to ecosystem, organismal, and human health. Stormwater runoff has been suggested to be a major contributor to marine microplastic pollution. This project aims to quantify the average concentration of microplastics in stormwater in a community on the Oregon Coast. To accomplish this, stormwater samples were collected from five sites in Cannon Beach, Oregon, and one sample was analyzed using a dissection microscope. Using this technique, the number, size, and composition of the microplastic particles were determined. The calculated concentration of microplastics in the stormwater sample was 12.21 MPs/L, and …

Henna Chatbot Capstone Review, Kobe Norcross

University Honors Theses

This thesis reviews the development of the Henna Chatbot, an AI-powered DEI consultant designed to provide personalized feedback to organizations. Sponsored by DEI consultant Arsh Haque, the project aims to address gaps in current DEI software, which often lacks team-specific feedback. The Henna Chatbot leverages GPT-3.5 Turbo to create an affordable SaaS platform where organizations can train Henna with their DEI values, and Henna will help organizations stay aligned with those values. The project spanned twenty weeks and was completed by a team of eight computer science students at Portland State University. The development process followed Agile methodologies, emphasizing effective …

Examining The Interaction Between Calcium Supplement Use, Demographics, And Lifestyle Factors On Bone Health In Women, Vix Talbot

University Honors Theses

Osteoporosis is a condition which poses a significant health threat, particularly among women during the menopause transition, where accelerated bone loss increases fracture risk. Calcium supplementation has been shown to be an important intervention to mitigate bone mineral density (BMD) decline during this and other periods of life. However, the efficacy of calcium supplementation is influenced by various individual factors, including demographics and lifestyle habits. This study investigates the interaction between calcium supplement use, and several interaction terms on bone health in women. Multiple linear regression analysis is employed to assess the impact of these factors on BMD. Data from …

Student Perceptions: How Stem Students Value Belonging Interventions, Elizabeth Runkel Baez

University Honors Theses

With the prioritization of increasing Science, Technology, Engineering, and Mathematics (STEM) graduates in the United States, researchers have become increasingly interested in how to promote STEM students' sense of belonging. Sense of belonging is considered a marker of persistence in STEM. Facilitated 'belonging interventions' are one way to strengthen a sense of belonging amongst STEM students. How students respond to, value, and understand these belonging interventions is relatively understudied. In this study, focus groups were conducted with STEM students from a single university to investigate how they value an in-class belonging activity. Qualitative thematic coding of focus group responses revealed …

Climate Justice Issues, Urban Heat Island Effect, And Trees As The Solution In Portland, Oregon, Cleo Needham

University Honors Theses

Portland, Oregon, is experiencing rising temperatures caused by climate change and urban heat island effect. High heat disproportionately impacts vulnerable communities in Portland, causing harm to physical and mental health. Trees are a solution that reduces temperatures in urban environments. A strategy called 3-30-300 helps create a structure for where to place trees to help people receive the benefits. There are challenges with trees, such as the space required, the significant cost, and the time it takes to mature. Using trees as a solution can support and protect vulnerable communities in Portland, Oregon.

Piloting A Drain Gauge As A Method Of Measuring Runoff From Ecoroofs In Portland, Trinity Perrin

University Honors Theses

The following paper will be exploring a pilot methodology of a drain gauge system I built that’s used to calculate stormwater runoff from ecoroofs in Portland, Oregon. The drain gauge is a less studied technique for measuring ecoroof runoff, but holds high potential for developing better monitoring and management of ecoroofs within the city of Portland. What separates this stormwater runoff capturing device apart from other stormwater runoff calculation techniques is its adaptable design and simple installation. The drain weir can be placed in any roof drain that an ecoroof has been installed simply by placing it into a roof …

High-Performance Finite Elements With Mfem, Julian Andrej, Nabil Atallah, Jan-Phillip Baecker, Jean-Sylvain Camier, Dylan Copeland, Veselin Dobrev, Yohann Dudouit, Tobias Duswald, Brendan Keith, Will Pazner, Multiple Additional Authors

Mathematics and Statistics Faculty Publications and Presentations

The MFEM (Modular Finite Element Methods) library is a high-performance C++ library for finite element discretizations. MFEM supports numerous types of finite element methods and is the discretization engine powering many computational physics and engineering applications across a number of domains. This paper describes some of the recent research and development in MFEM, focusing on performance portability across leadership-class supercomputing facilities, including exascale supercomputers, as well as new capabilities and functionality, enabling a wider range of applications. Much of this work was undertaken as part of the Department of Energy’s Exascale Computing Project (ECP) in collaboration with the Center for …

Mapping Mental Models Through An Improved Method For Identifying Causal Structures In Qualitative Data, Erin S. Kenzie, Wayne Wakeland, Antonie Jetter, Kristen Hassmiller Lich, Mellodie Seater, Melinda M. Davis

Systems Science Faculty Publications and Presentations

Qualitative data are commonly used in the development of system dynamicsmodels, but methods for systematically identifying causal structures in qualita-tive data have not been widely established. This article presents a modifiedprocess for identifying causal structures (e.g., feedback loops) that are commu-nicated implicitly or explicitly and utilizes software to make coding, tracking,and model rendering more efficient. This approach draws from existingmethods, system dynamics best practice, and qualitative data analysis tech-niques. Steps of this method are presented along with a description of causalstructures for an audience new to system dynamics. The method is applied to aset of interviews describing mental models of …

Cards With Class: Formalizing A Simplified Collectible Card Game, Dan Ha

University Honors Theses

Collectible card games (CCGs) have been a wildly popular game genre since the release of Wizards of the Coast's Magic: The Gathering. These games revolve around their thousands of cards and the hundreds of thousands of interactions they can create with their many effects. For designers, it is an incredibly demanding task to ensure that every single card works properly and that each card's text unambiguously conveys its intended behavior in all cases. The task only grows more difficult over time as the number of cards in the game grows and card effects become more complex or experimental. If the …

Scale-Dependent Effects Of Urban Canopy Cover, Canopy Volume, And Impervious Surfaces On Near Surface Air Temperature In Portland, Or, Carson Ralls

Geography Masters Research Papers

Cities are significantly warmer than their surrounding rural environments. Known as the ‘urban heat island effect’, it can affect the health of urban residents and lead to increased energy use. Although this effect is extensively researched, less is known about how landscape characteristics within cities affect local temperature variation. With a warming climate and the need for heat mitigation strategies becoming more urgent, having a finer detailed understanding of the effects on temperature is critical to guide proper management policies. This study examined how tree canopy cover, canopy volume, and impervious surface cover affect daytime near surface air temperature, and …