Digital Commons Network^™

Environmental Dna For Endangered Freshwater Mussel Monitoring: A Review On Global Synthesis Of Edna Methods, Challenges, And Innovative Strategies, Mizanur Rahman, Md. Saydur Rahman, Richard J. Kline

School of Earth, Environmental, & Marine Sciences Faculty Publications

Freshwater mussels (family Unionidae) are among the most endangered aquatic species worldwide, making effective monitoring vital for their conservation. Traditional surveys are laborious, time-consuming, and often miss rare or low-density populations. Environmental DNA (eDNA) is a highly sensitive, non-invasive approach for freshwater mussel detection and monitoring; however, uncertainties in ecological interpretation continue to limit its broader application in freshwater biodiversity monitoring. We conducted a systematic review of 49 peer-reviewed studies, identified through an extensive literature search, to assess temporal research trends, methodological advancements, ecological contexts, and regulatory readiness of freshwater mussel eDNA monitoring. Findings show that freshwater mussel eDNA research …

Animal Taxa Threatened By Adverse Fire Regimes In Western Australia: A Synthesis And Outlook, Tim S. Doherty, Mark G. Allen, Karlene Bain, Stephen Beatty, Allan H. Burbidge, Renee A. Catullo, Sarah Comer, Ben Corey, Saul J. Cowen, Robert A. Davis, Martin A. Dziminski, J. Anthony Friend, Bruce Greatwich, Mark S. Harvey, Hannah Killian, Michael E. Klunzinger, Damian C. Lettoof, Nicola J. Mitchell, Melinda Moir, Harry A. Moore, David L. Morgan, Ian J. Radford, Michael J. Rix, Tom Vigilante, Adrian F. Wayne, Corey Whisson, Nicole Willers, Matthew R. Williams

Natural Resources Research Articles

Adverse fire regimes threaten biodiversity, potentially leading to population declines and increased extinction risk. Understanding how varying fire regimes affect threatened species is essential for effective ecosystem management, including in Western Australia where diverse ecosystems are exposed to wildfires, Indigenous burning, and prescribed fire. We compiled and synthesised data on the threat of adverse fire regimes to threatened animal taxa in Western Australia. Using a threat classification scheme, we ranked adverse fire regimes as having either no, low, medium, high, or unknown impact on each taxon. A total of 212 taxa were reviewed, 153 (72%) of which are considered fire-threatened: …

Assessing Radio Transmitter Weight Effect And Evaluation Of Northern Bobwhite Chick Survival In Coastal North Carolina, Autumn S. Randall, Theron M. Terhune Ii, Matthew T. Springer, Darin J. Mcneil

Forestry and Natural Resources Faculty Publications

Studies on the earliest life stages are essential to our ecological understanding of avian demography; however, monitoring technologies that allow tracking of small birds are still limited in a variety of ways. One critical limitation, until recently, has been the development of methods for attaching transmitters to young birds with precocial development (e.g., Galliformes, Charadriiformes, etc.). The modified suture technique offers a means to attach transmitters to precocial chicks while accommodating rapid growth characterized by birds with precocial young. Although the sutured transmitter method was developed for northern bobwhite (Colinus virginianus) chicks, there remain key unknowns regarding best …

Retention Of P-Chip Microtransponders And Post-Tagging Survival Of Small-Bodied Stream Fishes, J. Spooner, Jonathan J. Spurgeon

Nebraska Cooperative Fish and Wildlife Research Unit: Staff Publications

No abstract provided.

Changing Fire Regimes And Nuanced Impacts On A Critically Imperiled Species, Jeremy T. Rockweit, Katie M. Dugger, Damon B. Lesmeister, Raymond J. Davis, Alan B. Franklin, J. Mark Higley

United States Department of Agriculture Wildlife Services: Staff Publications

Wildfire activity throughout western North America is increasing which can have important consequences for species persistence. Native species have evolved disturbance-adapted traits that confer resilience to natural disturbance provided disturbances operate within their historical range of variability. This resilience can erode as disturbance regimes change and begin operating outside this range. We assessed wildfire impacts during 1987–2018 on the northern spotted owl, an imperiled species with complex relationships with late and early seral forest in the Pacific Northwest, USA. We analyzed population- and individual-level wildfire impacts across the frequent-fire portion of the owl’s geographic range at two spatial scales and …

Dormant Propagules In Demographic Studies: A Recurrent Bias And Potential Solutions, Federico Borghesi

Graduate Thesis and Dissertation 2023-2024

In the face of unprecedented anthropogenic change, we increasingly turn to emergent technologies and extensive data sets for solutions that complement much needed systemic changes in our societies. These technological solutions, however, must be approached with care. We must recognize and address biases in the way data has been accumulated. In demographic studies, dormant life stages, such as seed banks, and other cryptic factors have often been neglected. The potential consequences of these omissions have been extensively described in the literature. In the first chapter, I analyze patterns of seed bank omissions in demographic models, finding unjustified omissions are widespread …

Tourism‑Supported Working Lands Sustain A Growing Jaguar Population In The Colombian Llanos, Matthew Hyde, Esteban Payán, Jorge Barragan, Diana Stasiukynas, Sanmantha Rincón, William L. Kendall, Jerónimo Rodríguez, Kevin R. Crooks, Stewart W. Breck, Valerie Boron

United States Department of Agriculture Wildlife Services: Staff Publications

Understanding large carnivore demography on human-dominated lands is a priority to inform conservation strategies, yet few studies examine long-term trends. Jaguars (Panthera onca) are one such species whose population trends and survival rates remain unknown across working lands. We integrated nine years of camera trap data and tourist photos to estimate jaguar density, survival, abundance, and probability of tourist sightings on a working ranch and tourism destination in Colombia. We found that abundance increased from five individuals in 2014 to 28 in 2022, and density increased from 1.88 ± 0.87 per 100 km² in 2014 to 3.80 …

Estimating Northern Spotted Owl (Strix Occidentalis Caurina) Pair Detection Probabilities Based On Call-Back Surveys Associated With Long-Term Mark-Recapture Studies, 1993–2018, Katie M. Dugger, Alan B. Franklin, Damon B. Lesmeister, Raymond J. Davis, J. David Wiens, Gary C. White, James D. Nichols, James E. Hines, Charles B. Yackulic, Carl J. Schwarz, Steven A. Ackers, L. Steven Andrews, Larissa L. Bailey, Robin Bown, Jesse Burgher, Kenneth P. Burnham, Peter C. Carlson, Tara Chestnut, Mary M. Conner, Krista E. Dilione, Eric D. Forsman, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, Julianna M. Jenkins, William L. Kendall, David W. Lapmphear, Christopher Mccafferty, Trent L. Mcdonald, Janice A. Reid, Jeremy T. Rockweit, David C. Simon, Stan G. Sovern, James K. Swingle, Heather Wise

United States Department of Agriculture Wildlife Services: Staff Publications

The northern spotted owl (Strix occidentalis caurina; hereinafter NSO) was listed as “threatened” under the Endangered Species Act in 1990 and population declines have continued since that listing. Given the species’ protected status, any proposed activities on Federal lands that might impact NSO require consultation with U.S. Fish and Wildlife Service and part of that consultation often includes surveys to determine presence and occupancy status of the species in the proposed activity area. The objective of this report is to present study-area specific estimates of the probability of detection for NSO pairs from twelve 2-week seasonal survey periods …

Loggerhead Shrike Detectability And Occurrence In Coastal South Carolina Urban Areas, Michelle Krauser

Electronic Theses and Dissertations

Grassland birds, such as the loggerhead shrike (Lanius ludovicianus), are threatened by extensive land-use change, including urbanization. Loggerhead shrikes have been declining since the early 1900s and are rare or extirpated in portions of their former range. Obtaining reliable population estimates of loggerhead shrikes is important to identify demographic trends and ensure conservation decisions are based on an accurate assessment of their current status. Imperfect detection, or the inability to detect every shrike during a survey, can result in biased population estimates. Estimating detection probability is labor-intensive and requires assumptions that are difficult to satisfy in most field studies. Understanding …

Advancing Hymenocallis Coronaria Conservation And Restoration For Improved Habitat Management In Fall Line Streams Of The Southeast, Andrew Paul Grunwald

All Theses

The rocky shoals spider lily (Hymenocallis coronaria) is a culturally and ecologically important emergent macrophyte endemic to the biodiverse shoals of fall line streams in the southeastern United States. H. coronaria has declined throughout its range as shoal habitat has become increasingly threatened by flow modification and other anthropogenic stressors. The genetics and botany of H. coronaria have been given considerable attention, but quantitative habitat research has been lacking. Furthermore, despite substantial need, public interest, and its status as an indicator species for fall line streams, no research has been conducted on H. coronaria restoration. Our main objectives …

An Efficient Method Of Evaluating Multiple Concurrent Management Actions On Invasive Populations, Amy J. Davis, Randy Farrar, Brad Jump, Parker Hall, Travis Guerrant, Kim M. Pepin

United States Department of Agriculture Wildlife Services: Staff Publications

Evaluating the efficacy of management actions to control invasive species is crucial for maintaining funding and to provide feedback for the continual improvement of management efforts. However, it is often difficult to assess the efficacy of control methods due to limited resources for monitoring. Managers may view effort on monitoring as effort taken away from performing management actions. We developed a method to estimate invasive species abundance, evaluate management effectiveness, and evaluate population growth over time from a combination of removal activities (e.g., trapping, ground shooting) using only data collected during removal efforts (method of removal, date, location, number of …

Conserving Endangered Black-Footed Ferrets: Biological Threats, Political Challenges, And Lessons Learned, Travis M. Livieri, Steven C. Forrest, Marc R. Matchett, Stewart Breck

United States Department of Agriculture Wildlife Services: Staff Publications

There may be few stories in the annals of wildlife management that are as dramatic as the near demise and comeback of the black-footed ferret (Mustela nigripes). Endemic only to North America, this charming little carnivore found only in the continent’s central grasslands was hardly known to science until the mid-20th century. By then, vast colonies of the prey it depended on for food and shelter, the prairie dog (Cynomys spp.), had been wiped out through disease (sylvatic plague) and an agricultural industry with little tolerance for burrowing and grazing rodents. At its low point, the species’ …

Population Structure Analysis Of The Endangered Oak Quercus Brandegeei, Carolyn Brinckwirth

DePaul Discoveries

As humans continue to impact landscapes and ecosystems throughout the entire world, many plant and animal species have faced major changes in their environments. The rare endemic oak, Quercus brandegeei, is one such endangered species located in the Sierra La Laguna mountains of Baja California Sur, Mexico. This tree occurs solely on the ephemeral riverbeds of the mountains, which are inundated seasonally by hurricane waters. It is important to understand the fundamental characteristics, like spatial distribution, of Q. brandegeei in order to develop restorative management practices to protect this tree against extinction. Determining the geographic distribution of a species …

Range-Wide Declines Of Northern Spotted Owl Populations In The Pacific Northwest: A Meta-Analysis, Alan B. Franklin, Katie M. Dugger, Damon B. Lesmeister, Raymond J. Davis, J. David Wiens, Gary C. White, James D. Nichols, James E. Hines, Charles B. Yackulic, Carl J. Schwarz, Steven H. Ackers, L. Steven Andrews, Larissa L. Bailey, Robin Bown, Jesse Burgher, Kenneth P. Burnham, Peter C. Carlson, Tara Chestnut, Mary M. Conner, Krista E. Dilione, Eric D. Forsman, Elizabeth M. Glenn, Scott A. Gremel, Keith A. Hamm, Dale R. Herter, J. Mark Higley, Rob B. Horn, Julianna M. Jenkins, William L. Kendall, David W. Lamphear, Christopher Mccafferty, Trent L. Mcdonald, Janice A. Reid, Jeremy T. Rockweit, David C. Simon, Stan G. Sovern, James K. Swingle, Heather Wise

United States Department of Agriculture Wildlife Services: Staff Publications

The northern spotted owl (Strix occidentalis caurina) inhabits older coniferous forests in the Pacific Northwest and has been at the center of forest management issues in this region. The immediate threats to this federally listed species include habitat loss and competition with barred owls (Strix varia), which invaded from eastern North America. We conducted a prospective meta-analysis to assess population trends and factors affecting those trends in northern spotted owls using 26 years of survey and capture-recapture data from 11 study areas across the owls' geographic range to analyze demographic traits, rates of population change, and occupancy parameters for spotted …

Evaluating Potential Effects Of Solar Power Facilities On Wildlife From An Animal Behavior Perspective, Rachel Y. Chock, Barbara Clucas, Elizabeth K. Peterson, Bradley Blackwell, Daniel T. Blumstein, Kathleen Church, Esteban Fernández-Juricic, Gabriel Francescoli, Alison L. Greggor, Paul Kemp, Gabriela M. Pinho, Peter M. Sanzenbacher, Bruce A. Schulte, Pauline Toni

United States Department of Agriculture Wildlife Services: Staff Publications

Solar power is a renewable energy source with great potential to help meet increasing global energy demands and reduce our reliance on fossil fuels. However, research is scarce on how solar facilities affect wildlife. With input from professionals in ecology, conservation, and energy, we conducted a research-prioritization process and identified key questions needed to better understand impacts of solar facilities on wildlife. We focused on animal behavior, which can be used to identify population responses before mortality or other fitness consequences are documented. Behavioral studies can also offer approaches to understand the mechanisms leading to negative interactions (e.g., collision, singeing, …

Habitat Modification On An Urban High School Campus, Nickolas John Davros Ii

Graduate Theses

Biodiversity is in a crisis worldwide, driven by the negative effects from urbanization. Ecosystems are being destroyed in favor of urban areas and natural resources are diminishing. Stormwater management has gained an elevated importance and its associated infrastructure could help counter the loss of biodiversity. Freshwater within urban areas is critical for organisms. Anthropogenic ponds can act as refuge habitats within a blue network and have become a hotspot for ecological research. Using principles of reconciliation ecology, the effects on biodiversity were assessed following the conversion of a stormwater basin on an urban high school in Charlotte, NC. A before-and-after …

Isotope-Based Methods For Evaluating Fish Trophic Geographies, Julie L. Vecchio

USF Tampa Graduate Theses and Dissertations

Data on the movement and diets of fish during a variety of life stages are important inputs to fisheries stock assessments and marine ecosystem models. Stable isotopes may provide previously inaccessible information on movement and diet of a variety of managed and forage fish species. Here I used several novel means of interpretation for stable isotope data to infer diets and movements of several important fisheries species over both short (weeks to months) and long (lifetime) timescales. To calculate a constant partitioning offset (CPO) between the δ¹⁵N of muscle and of liver tissue, I conducted a literature search …

Individual And Population Fitness Consequences Associated With Large Carnivore Use Of Residential Development, Heather Johnson, David L. Lewis, Stewart W. Breck

United States Department of Agriculture Wildlife Services: Staff Publications

Large carnivores are negotiating increasingly developed landscapes, but little is known about how such behavioral plasticity influences their demographic rates and population trends. Some investigators have suggested that the ability of carnivores to behaviorally adapt to human development will enable their persistence, and yet, others have suggested that such landscapes are likely to serve as population sinks or ecological traps. To understand how plasticity in black bear (Ursus americanus) use of residential development influences their population dynamics, we conducted a 6-yr study near Durango, Colorado, USA. Using space-use data on individual bears, we examined the influence of use of residential …

Long-Term Monitoring Of Rare Gypsum Communities In The Eastern Mojave Desert: A Study In Science And Art, Tiffany Jane-Marie Pereira

UNLV Theses, Dissertations, Professional Papers, and Capstones

For land managers, reliable estimates of soil seed banks, and more specifically, change in seed banks over time, provide insight into the restoration and regeneration potential of the landscape, site history and disturbance mapping, and, invasive and rare plant management. To understand the intricacies of desert soil seed banks in relation to aboveground vegetation change, my research evaluated long-term change in soil seed banks, fertile islands, and plant communities of conservation-priority gypsum rare plant habitat of the eastern Mojave Desert. Research found significant spatial and temporal differences in seed bank composition and density over an 11-year period; however, the gypsum …

Amphibian And Reptile Community Responses To Forest And Riparian Disturbance, Jacquelyn Christine Guzy

Graduate Theses and Dissertations

Riparian zones are transitional, semi-terrestrial areas regularly influenced by freshwater. These areas serve as dispersal corridors for many animal and plant species and ultimately function as important reservoirs of biodiversity in altered landscapes. While much of the riparian habitat in the United States has been affected by anthropogenic activities, management actions may mitigate potentially negative influences of these activities. For example, Streamside Management Zones (i.e., riparian buffers; SMZs) are commonly implemented within managed forests to protect water quality, but may also provide habitat for riparian-associated wildlife. Yet, little research has rigorously addressed the value of SMZs for wildlife, particularly cryptic …

Sex‐Biased Survival Contributes To Population Decline In A Long‐Lived Seabird, The Magellanic Penguin, Natasha J. Gownaris, P. D. Boersma

Environmental Studies Faculty Publications

We developed a Hidden Markov mark–recapture model (R package marked) to examine sex‐specific demography in Magellanic Penguins (Spheniscus magellanicus ). Our model was based on 33 yr of resightings at Punta Tombo, Argentina, where we banded ~44,000 chicks from 1983 to 2010. Because we sexed only 57% of individuals over their lifetime, we treated sex as an uncertain state in our model. Our goals were to provide insight into the population dynamics of this declining colony, to inform conservation of this species, and to highlight the importance of considering sex‐specific vital rates in demographic seabird studies. Like many other …

Stakeholder Collaboration Strategies In The Hawaii Tourism Industry, Catherine Kaehu

Walden Dissertations and Doctoral Studies

Travel and tourism are concepts that date back to 3000 B.C. with globalization extending possibilities of travel to people across the world. Addressing stakeholder concerns is especially important in promoting the development of sustainable tourism contributing to the protection of Earth's natural resources and long-term sustainability of tourism businesses through collaboration and participation. This qualitative case study incorporated a strategic stakeholder management framework, focusing on exploring strategies that Hawaii tourism industry leaders use for increasing stakeholder participation in sustainable tourism development. The population consisted of individuals across 6 categories of Hawaii tourism industry stakeholders identified as visitors, residents, government or …

A Framework For Linking Population Model Development With Ecological Risk Assessment Objectives, Sandy Raimondo, Matthew Etterson, Nathan Pollesch, Kristina Garber, Andrew Kanarek, Wade Lehmann, Jill Awkerman

United States Environmental Protection Agency: Publications

The value of models that link organism-level impacts to the responses of a population in ecological risk assessments (ERAs) has been demonstrated extensively over the past few decades. There is little debate about the utility of these models to translate multiple organism-level endpoints into a holistic interpretation of effect to the population; however, there continues to be a struggle for actual application of these models as a common practice in ERA. Although general frameworks for developing models for ERA have been proposed, there is limited guidance on when models should be used, in what form, and how to interpret model …

Landscape Genetics Of The California Tiger Salamander: Inferences From Multiple Methods, Samantha Gabrielle Thomas

Masters Theses & Specialist Projects

Landscape genetics is a rapidly growing field of study that compares patterns of gene flow among populations with habitat heterogeneity across a landscape to infer the interaction between dispersal of individuals and their physical environment. Empirical data generated from a landscape genetics study can inform conservation and management strategies, making the field increasing popular. However, concerns have arisen in the literature that the field is expanding faster than the analytic framework that supports it. Multiple methods for generating estimates of the association among habitat types and dispersal (i.e., least-cost paths and resistance surfaces) have been proposed, and there is a …

Management Of Predators, Prey, And Aviation Safety At Naval Air Station Patuxent River, Maryland: Can Coyotes Help Reduce Deer Strike Hazards?, Robert Lewis

All Graduate Plan B and other Reports, Spring 1920 to Spring 2023

In the past 100 years, coyotes (Canis latrans) have expanded their range eastward. During their expansion, coyotes hybridized with gray wolves (Canis lupus) in the north and red wolves (Canis rufus) in the south. Coyotes were historically occupants of the plains, but now may be found in environments as varied as the sagebrush steppe, deserts, swamps, and inner cities. St. Mary’s County, MD, home to Naval Air Station Patuxent River (Pax River), was one of the last counties in the country to be colonized by coyotes. Pax River is a research and development/flight test and evaluation center, and houses numerous …

Climate Change, Managed Relocation, And The Risk Of Intra-Continental Plant Invasions: A Theoretical And Empirical Exploration Relative To The Flora Of New England, Jesse Bellemare, Bryan Connolly, Dov F. Sax

Biological Sciences: Faculty Publications

The high rate of anthropogenic climate change projected for coming decades and evidence of low migration ability for many species have led researchers to warn of a looming extinction crisis. This threat is expected to be most acute for small-ranged endemic species, which could see novel climatic conditions develop rapidly across the entirety of their limited geographic ranges. To avoid extinctions, some conservationists have proposed that climateimperiled species might be candidates for "assisted colonization" or "managed relocation" to new regions, outside their historical ranges. One major concern related to managed relocation is the possibility that some relocated species could later …

Factors That Influence Vital Rates Of Seaside And Saltmarsh Sparrows In Coastal New Jersey, Usa, Samuel G. Roberts, Rebecca A. Longenecker, Matthew A. Etterson, Katharine J. Ruskin, Chris S. Elphick, Brian J. Olsen, W. Gregory Shriver

United States Environmental Protection Agency: Publications

As saltmarsh habitat continues to disappear, understanding the factors that influence the population dynamics of saltmarsh breeding birds is an important step in the conservation of these declining species. Using 5 yrs (2011–2015) of demographic data, we evaluated and compared apparent adult survival and nest survival of Seaside (Ammodramus maritimus) and Saltmarsh (A. caudacutus) sparrows at the Edwin B. Forsythe National Wildlife Refuge in New Jersey, USA. We determined the effect of site management history (unditched vs. ditched marshes) on adult and nest survival to aid in prioritizing future management or restoration actions. Apparent adult …

Mining Social Media Data For Improved Understanding Of Disaster Resilience, Lei Zou

LSU Doctoral Dissertations

Disaster resilience is the capacity of a community to ‘bounce back’ from disastrous events, by effecting resilience building activities through the four phases of emergency management – preparedness, response, recovery, and mitigation. However, data describing a community’s behaviors in each phase are difficult to access in traditional databases. Social media data provide an innovative data source to better understand communities’ responses and behaviors in each phase of emergency management during disasters, and thus could ultimately monitor and enhance disaster resilience. This study analyzes the spatial-temporal patterns of Twitter activities during Hurricane Sandy, which struck the northeastern United States on October …

Who Cares About The Environment? A Study Of Environmental Behavior In Maine, Chandler L. Blake

Journal of Environmental and Resource Economics at Colby

Identifying and targeting environmentally minded people is crucial to making any environmental campaign successful. It allows you to advertise to the people who will be the most helpful and supportive to your cause. The goal of this study is to identify the general demographics of environmentally minded people. To do this I examine voting data through each county in Maine and run a regression to test whether income, education level, and household size have any correlation to how the county votes on environmental issues. I found that the higher a county’s income, the more environmentally friendly their voting. I also …

Factors Affecting Female Space Use In Ten Populations Of Prairie Chickens, Virginia L. Winder, Kaylan M. Carrlson, Andrew J. Gregory, Christian A. Hagen, David A. Haukos, Dylan C. Kesler, Lena C. Larsson, Ty W. Matthews, Lance B. Mcnew, Michael A. Patten, Jim C. Pitman, Larkin A. Powell, Jennifer A. Smith, Tom Thompson, Donald H. Wolfe, Brett K. Sandercock

School of Natural Resources: Faculty Publications

Conservation of wildlife depends on an understanding of the interactions between animal

movements and key landscape factors. Habitat requirements of wide-ranging species often vary spatially,

but quantitative assessment of variation among replicated studies at multiple sites is rare. We investigated

patterns of space use for 10 populations of two closely related species of prairie grouse: Greater Prairie-

Chickens (Tympanuchus cupido) and Lesser Prairie-Chickens (T. pallidicinctus). Prairie chickens require large,

intact tracts of native grasslands, and are umbrella species for conservation of prairie ecosystems in North

America. We used resource utilization functions to investigate space use by female prairie chickens during …