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The Plant Structure Ontology, A Unified Vocabulary Of Anatomy And Morphology Of A Flowering Plant, Katica Ilic, Elizabeth Kellogg, Pankaj Jaiswal, Felipe Zapata, Peter Stevens, Leszek Vincent, Shulamit Avraham, Leonore Reiser, Anuradha Pujar, Martin Sachs, Noah Whitman, Susan Mccouch, Mary Schaeffer, Doreen Ware, Lincoln Stein, Seung Rhee
The Plant Structure Ontology, A Unified Vocabulary Of Anatomy And Morphology Of A Flowering Plant, Katica Ilic, Elizabeth Kellogg, Pankaj Jaiswal, Felipe Zapata, Peter Stevens, Leszek Vincent, Shulamit Avraham, Leonore Reiser, Anuradha Pujar, Martin Sachs, Noah Whitman, Susan Mccouch, Mary Schaeffer, Doreen Ware, Lincoln Stein, Seung Rhee
Biology Department Faculty Works
Formal description of plant phenotypes and standardized annotation of gene expression and protein localization data require uniform terminology that accurately describes plant anatomy and morphology. This facilitates cross species comparative studies and quantitative comparison of phenotypes and expression patterns. A major drawback is variable terminology that is used to describe plant anatomy and morphology in publications and genomic databases for different species. The same terms are sometimes applied to different plant structures in different taxonomic groups. Conversely, similar structures are named by their species-specific terms. To address this problem, we created the Plant Structure Ontology (PSO), the first generic ontological …
Quantitative Profiling Of Arabidopsis Polar Glycerolipids In Response To Phosphorus Starvation. Roles Of Phospholipases Dζ1 And Dζ2 In Phosphatidylcholine Hydrolysis And Digalactosyldiacylglycerol Accumulation In Phosphorus-Starved Plants, Xuemin Wang, Maoyin Li, Ruth Welti
Quantitative Profiling Of Arabidopsis Polar Glycerolipids In Response To Phosphorus Starvation. Roles Of Phospholipases Dζ1 And Dζ2 In Phosphatidylcholine Hydrolysis And Digalactosyldiacylglycerol Accumulation In Phosphorus-Starved Plants, Xuemin Wang, Maoyin Li, Ruth Welti
Biology Department Faculty Works
Phosphorus is an essential macronutrient that often limits plant growth and development. Under phosphorus-limited conditions, plants undergo substantial alterations in membrane lipid composition to cope with phosphorus deficiency. To characterize the changes in lipid species and to identify enzymes involved in plant response to phosphorus starvation, 140 molecular species of polar glycerolipids were quantitatively profiled in rosettes and roots of wild-type Arabidopsis (Arabidopsis thaliana) and phospholipase D knockout mutants pldζ1, pldζ2, and pldζ1pldζ2. In response to phosphorus starvation, the concentration of phospholipids was decreased and that of galactolipids was increased. Phospholipid lost in phosphorus-starved Arabidopsis rosettes was replaced by an …
Host-Parasite Relatedness In Wood Ducks: Patterns Of Kinship And Parasite Success, Charlotte Nielsen, Brad Semel, Paul Sherman, David Westneat, Patricia Parker
Host-Parasite Relatedness In Wood Ducks: Patterns Of Kinship And Parasite Success, Charlotte Nielsen, Brad Semel, Paul Sherman, David Westneat, Patricia Parker
Biology Department Faculty Works
We investigated the role of kinship in intraspecific nest parasitism of wood ducks (Aix sponsa). Among waterfowl, female philopatry creates the potential for female relatives to nest in proximity. Costs of intraspecific nest parasitism to host females may be reduced if parasites lay eggs with kin. However, previous observations of marked wood ducks indicated that females avoided parasitizing clutch mates or the female that incubated them. To further examine the role of kinship, we determined the genotypes of 27 host-parasite pairs at five microsatellite loci. Average relatedness between hosts and all females laying parasitic eggs was only 0.04 ± 0.03. …
A Subset Of Mer1p-Dependent Introns Requires Bud13p For Splicing Activation And Nuclear Retention, Marc Spingola, Frederick Scherrer
A Subset Of Mer1p-Dependent Introns Requires Bud13p For Splicing Activation And Nuclear Retention, Marc Spingola, Frederick Scherrer
Biology Department Faculty Works
In the yeast Saccharomyces cerevisiae, Mer1p is expressed only during meiosis, and its expression is linked to the splicing of at least three mRNAs: MER2, MER3, and AMA1. Previous evidence suggests that Mer1p activates splicing by directly recruiting snRNPs or stabilizing intermediate splicing complexes formed on pre-mRNA that contains an intronic Mer1p enhancer element. However, some splicing factors, especially accessory/non-snRNP factors, have critical roles in retaining unspliced pre-mRNAs in the nucleus. We tested if Mer1p may indirectly regulate splicing by preventing the export of pre-mRNAs to the cytoplasm and also demonstrated that a second subunit of the Retention and Splicing …
Double Knockouts Of Phospholipases Dζ1 And Dζ2 In Arabidopsis Affect Root Elongation During Phosphate-Limited Growth But Do Not Affect Root Hair Patterning, Xuemin Wang, Maoyin Li, Chunbo Qin, Ruth Welti
Double Knockouts Of Phospholipases Dζ1 And Dζ2 In Arabidopsis Affect Root Elongation During Phosphate-Limited Growth But Do Not Affect Root Hair Patterning, Xuemin Wang, Maoyin Li, Chunbo Qin, Ruth Welti
Biology Department Faculty Works
Root elongation and root hair formation are important in nutrient absorption. We found that two Arabidopsis (Arabidopsis thaliana) phospholipase Ds (PLDs), PLDζ1 and PLDζ2, were involved in root elongation during phosphate limitation. PLDζ1 and PLDζ2 are structurally different from the majority of plant PLDs by having phox and pleckstrin homology domains. Both PLDζs were expressed more in roots than in other tissues. It was reported previously that inducible suppression or inducible overexpression of PLDζ1 affected root hair patterning. However, gene knockouts of PLDζ1, PLDζ2, or the double knockout of PLDζ1 and PLDζ2 showed no effect on root hair formation. The …
Variation In The Innate And Acquired Arms Of The Immune System Among Five Shorebird Species, Luisa Mendes, Theunis Piersma, Dennis Hasselquist, Kevin Matson, Robert Ricklefs
Variation In The Innate And Acquired Arms Of The Immune System Among Five Shorebird Species, Luisa Mendes, Theunis Piersma, Dennis Hasselquist, Kevin Matson, Robert Ricklefs
Biology Department Faculty Works
To contribute to an understanding of the evolutionary processes that shape variation in immune responses, we compared several components of the innate and acquired arms of the immune system in five related, but ecologically diverse, migratory shorebirds (ruff Philomachus pugnax L., ruddy turnstone Arenaria interpres L., bar-tailed godwit Limosa lapponica L., sanderling Calidris alba Pallas and red knotC. canutus L.). We used a hemolysis-hemagglutination assay in free-living shorebirds to assess two of the innate components (natural antibodies and complement-mediated lysis), and a modified quantitative enzyme-linked immunosorbent assay in birds held in captivity to assess the acquired component (humoral antibodies against …
Physiological Effects On Demography: A Long‐Term Experimental Study Of Testosterone’S Effects On Fitness, W. Reed, M. Clark, P. Parker, S. Raouf, N. Arguedas, D. Monk, E. Snajdr, V. Nolan, E. Ketterson
Physiological Effects On Demography: A Long‐Term Experimental Study Of Testosterone’S Effects On Fitness, W. Reed, M. Clark, P. Parker, S. Raouf, N. Arguedas, D. Monk, E. Snajdr, V. Nolan, E. Ketterson
Biology Department Faculty Works
Understanding physiological and behavioral mechanisms underlying the diversity of observed life‐history strategies is challenging because of difficulties in obtaining long‐term measures of fitness and in relating fitness to these mechanisms. We evaluated effects of experimentally elevated testosterone on male fitness in a population of dark‐eyed juncos studied over nine breeding seasons using a demographic modeling approach. Elevated levels of testosterone decreased survival rates but increased success of producing extra‐pair offspring. Higher overall fitness for testosterone‐treated males was unexpected and led us to consider indirect effects of testosterone on offspring and females. Nest success was similar for testosterone‐treated and control males, …
Conservation Medicine On The Galápagos Islands: Partnerships Among Behavioral, Population, And Veterinary Scientists, Patricia Parker, Noah Whiteman, R. Miller
Conservation Medicine On The Galápagos Islands: Partnerships Among Behavioral, Population, And Veterinary Scientists, Patricia Parker, Noah Whiteman, R. Miller
Biology Department Faculty Works
No abstract provided.