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Biology

Occidental College

Selected Works

Articles 1 - 4 of 4

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Distribution And Dietary Regulation Of An Associated Facultative Rhizobiales-Related Bacterium In The Omnivorous Giant Tropical Ant, Paraponera Clavata, Hannah Larson, Shana Goffredi, Erica Parra, Orlando Vargas, Adrian Pinto-Tomas, Terrence Mcglynn May 2014

Distribution And Dietary Regulation Of An Associated Facultative Rhizobiales-Related Bacterium In The Omnivorous Giant Tropical Ant, Paraponera Clavata, Hannah Larson, Shana Goffredi, Erica Parra, Orlando Vargas, Adrian Pinto-Tomas, Terrence Mcglynn

Shana Goffredi

We document a facultative Bartonella-like Rhizobiales bacterium in the giant tropical ant, Paraponera clavata. In a lowland tropical rainforest in Costa Rica, 59 colonies were assayed for the prevalence of the Bartonella-like bacterium (BLB), 14 of which were positive. We addressed three questions: First, how does the prevalence of BLB within colonies vary with environmental conditions? Second, how does diet affect the prevalence of BLB in P. clavata? Third, how does the distribution of BLB among colonies reflect ambient differences in food resources and foraging habits? A variety of environmental variables that may be predictive of the presence of BLB …


Ontogenetic Variation In Epibiont Community Structure In The Deep-Sea Yeti Crab, Kiwa Hirsuta: Convergence Among Crustaceans, Shana Goffredi, Ann Gregory, William Jones, Norma Morella, Reid Sakamoto Mar 2014

Ontogenetic Variation In Epibiont Community Structure In The Deep-Sea Yeti Crab, Kiwa Hirsuta: Convergence Among Crustaceans, Shana Goffredi, Ann Gregory, William Jones, Norma Morella, Reid Sakamoto

Shana Goffredi

Recent investigations have demonstrated that unusually 'hairy' yeti crabs within the family Kiwaidae associate with two predominant filamentous bacterial families, the Epsilon and Gammaproteobacteria. These analyses, however, were based on samples collected from a single body region, the setae of pereopods. To more thoroughly investigate the microbiome associated with Kiwa puravida, a yeti crab species from Costa Rica, we utilized barcoded 16S rRNA amplicon pyrosequencing, as well as microscopy and terminal restriction fragment length polymorphism analysis. Results indicate that, indeed, the bacterial community on the pereopods is far less diverse than on the rest of the body (Shannon indices ranged …


Aquatic Microbial Habitats Within A Neotropical Rainforest: Bromeliads And Ph-Associated Trends In Bacterial Diversity And Composition, Shana Goffredi, Adam Kantor, Walter Woodside Jan 2011

Aquatic Microbial Habitats Within A Neotropical Rainforest: Bromeliads And Ph-Associated Trends In Bacterial Diversity And Composition, Shana Goffredi, Adam Kantor, Walter Woodside

Shana Goffredi

Tank-forming bromeliads, suspended in the rainforest canopy, possess foliage arranged in compact rosettes capable of long-term retention of rainwater. This large and unique aquatic habitat is inhabited by microorganisms involved in the important decomposition of impounded material. Moreover, these communities are likely influenced by environmental factors such as pH, oxygen, and light. Bacterial community composition and diversity was determined for the tanks of several bromeliad species (Aechmea and Werauhia) from northern Costa Rica, which span a range of parameters, including tank morphology and pH. These were compared with a nearby forest soil sample, an artificial tank (amber bottle), and a …


Decadal-Scale Changes In Southern California Sciaenids Under Different Levels Of Harvesting Pressure, Eric F. Miller, Daniel J. Pondella Ii, D Shane Beck, Kevin T. Herbinson Jan 2011

Decadal-Scale Changes In Southern California Sciaenids Under Different Levels Of Harvesting Pressure, Eric F. Miller, Daniel J. Pondella Ii, D Shane Beck, Kevin T. Herbinson

Daniel Pondella

A unique 38-year time-series of power-plant entrapment data collected across ∼170 km of the southern California coastline was examined to describe the decadal-scale trends in common Southern California Bight sciaenid abundance in relation to oceanographic conditions. Adult catches for five of seven species declined at differing rates and severity. Declines of up to 94% were detected in historically common species such as Genyonemus lineatus, whereas historically less abundant species have increased dramatically, e.g. Umbrina roncador (2626%). Over time, the entrapped community became increasingly influenced by species with more southerly distributions, indicated by a significant decline in the average latitudinal midpoint …