Digital Commons Network^™

Leveraging Mammal Mycophagy To Determine Environmental Drivers Of Truffle Diversity, Brittany Hartsock

Electronic Theses and Dissertations

Many mycorrhizal fungi are hypogeous (truffle-forming), producing underground fruiting bodies. Studying truffles is inherently challenging due to their hidden nature. However, mycophagous mammals provide a unique opportunity to study hypogeous fungi because they rely on truffles as a food source. Although several truffle species have recently been described in the southern Appalachian region, their fruiting patterns remain poorly understood. To address this, we quantified truffle richness and spore loads from 670 Peromyscus scat samples collected across 42 sites spanning an environmental gradient during 2024 in the Blue Ridge Mountains of East Tennessee. We found that truffle richness and spore abundance …

Multivariate Ecological Assessment Of Flora Of Village Karri Haider, District Tank, Kp, Numan Khan, Muhammad Azeem, Muhammad Adnan Hamza, Muhammad Aleem, Arshad Rasool, Ammara Wakeel, Sehrish Sadia

Journal of Bioresource Management

Spatial and temporal patterns of vegetation change are influenced by multiple factors, including the physical environment, land-use history, prior disturbance, and initial vegetation composition. The primary aim of this study was to understand floristic vegetation features, species diversity, and the classification of plant communities in Village Karri Haider, District Tank, Khyber Pakhtunkhwa (KP). Samples were collected from each transect using quadrats of 1 m × 1 m for herbs. Soil from three quadrats was mixed to make composite samples, and soil elements were quantified through laboratory analyses. Two surveys were conducted from July to December, 2023. In the first survey, …

Distribution And Diversity Of Ponyfishes (Perciformes, Leiognathidae) In The Waters Of Sonmiani’S Bay, Balochistan, Pakistan, Noor Hawa, Noor Us Saher

Journal of Bioresource Management

The current research was conducted during October 2020 to September 2021 in bay waters of Sonmiani, Balochistan as aimed to fill the paucity of diversity and distribution of research for the bay waters. Monthly fish samples were collected using gill net and beach seine during high and low tide. In the present study, out of nine species, the six species were identified as a new report species belongs to Leiognathidae family. Secutor interruptus (N=132) was the most abundant species whereas the least abundant species collected during the study period was Karalla daura (N=1). Highest diversity (1.37) was estimated during the …

A Genetic Analysis Of The Rare Endemic Astragalus Ripleyi Barneby, Juan Antonio Jaramillo-Chico

Master's Theses

Astragalus ripleyi Barneby is a rare endemic species found in the San Luis Valley of the southern portions of the Rocky Mountains in Colorado and New Mexico. Though not federally listed as endangered, the species is on the Bureau of Land Management’s Sensitive Species List, warranting protection and continued management. This study aims to provide information about the genetic health of the species to inform conservation efforts and provide updated management recommendations. A genetic health analysis was conducted investigating the levels of diversity present in the species, how genetic diversity is structured across the known range of the species and …

Exotic Two-Spined Trap-Jaw Ants (Odontomachus Haematodus) In Urban Parks Of Hattiesburg, Mississippi: Recommended Sampling Methods And Notes On Nesting Biology, Caroline M. Marley, Vinny Halsey, Lila Blackburn, Kayla D. Stan, Kaitlin M. Baudier

Midsouth Entomologist

The two-spined trap-jaw ant, Odontomachus haematodus (Linnaeus), is native to South America and was introduced to the United States via Mobile, Alabama in the mid-twentieth century. Misidentification as a native congener for several decades has inhibited the study of the ecology of O. haematodus in its introduced range within the Gulf Coastal Plain. We conducted a multimethod survey to: 1) assess the abundance of O. haematodus across urban parks in Hattiesburg, MS, the northernmost published record in this species’ exotic range, 2) establish which sampling methodologies are most effective for conducting urban surveys of O. haematodus, and 3) study …

Great Graminoids! Quantifying Vegetation On Roan’S Western Balds Over The Last 80 Years (1936, 1956, 2016), James T. Donaldson

Faculty Open Access Works

PowerPoint originally presented at Friends of Roan Mountain Winter Naturalists' Rally 11 Feb. 2017.

Grant funding from Friends of Roan Mountain for resampling historic transects from Carvers Gap to Grassy Ridge. Revised 2021, 2022, & 2023 (technical features and diversity); edited for clarity 2026 (for written rather than oral presentation & added references slide).

Gaining Mussel: Evaluating Reintroduction Success Of Native Freshwater Mussels In Nebraska And Eastern Wyoming, Travis A. Moore

School of Natural Resources: Dissertations, Theses, and Student Research

Freshwater mussels are one of the most imperiled groups of organisms in North America, with over two-thirds of species considered threatened, endangered, or of special concern. These long-lived bivalves are essential to stream ecosystems, acting as filter feeders that improve water quality and as indicators of aquatic health. In Nebraska and Wyoming, native mussel populations have declined sharply due to habitat modification, pollution, and reduced connectivity. Two species of particular concern are the Plain Pocketbook Lampsilis cardium, listed as Tier I at-risk in Nebraska, and the Fatmucket Lampsilis siliquoidea, a Tier II at-risk species. In response, state agencies …

Ecological Studies Of Wolves On Isle Royale, Sarah R. Hoy, Rolf O. Peterson, John A. Vucetich

Ecological Studies of Wolves on Isle Royale

Annual Report 2025-2026

Baseline Assessment Of Insect Biodiversity And Distribution In La Salle Botanical Gardens, Pampanga, Philippines, Amir Lyndon Gavriell C. Beup, Kaleela Euan G. Jayson, Alyssa Ira Z. Tan, Ronielle Elisha S. Pascual, Alexi Gabrielle S. Henson, Esperidion Josef P. Ladao Iii, Juan Carlo T. Gumangan

Sinaya: A Philippine Journal for Senior High School Teachers and Students

Insects are crucial for ecosystem functions, such as pollination and food web maintenance. This study aims to assess insect biodiversity in La Salle Botanical Gardens (LSBG) in Porac, Pampanga, focusing on its grassland and forestland areas. Using rapid biodiversity assessment, this study provides baseline data on insect diversity, abundance, dominance, and evenness for conservation. Sampling employed transect line intercept and quadrat methods. Specimens were collected using different collection and preservation techniques. Insects (n = 184) were collected from August to October 2024, with specimens (n = 46) belonging to seven insect orders in the grassland and specimens (n = 138) …

Indigenizing Aquaculture: In Pursuit Of An Integrated Multi-Trophic Aquaculture System For Enhanced Self-Sufficiency In Akaroa Harbour, Aotearoa New Zealand, Cali R. Trainor

Capstone Collection

This study assessed the feasibility of integrating two pre-existing aquaculture activities in Akaroa Harbour, Aotearoa New Zealand into an integrated multi-trophic aquaculture (IMTA) system. The cultivation of giant kelp (Macrocystis pyrifera) presents an opportunity to improve the sustainability of Chinook salmon (Oncorhynchus tshawytscha) farming by introducing alternative food sources for salmon, which can be used to produce fish feed locally, enhancing the self-sufficiency of the community and boosting the holistic efficiency of the system. Macroinvertebrates residing in giant kelp wrack were collected, identified, and quantified to determine if any of the Macrocystis-associated specimens could serve as …

Preliminary Survey Of Subtidal Crustaceans On Southeast Sapelo Island, Georgia, Elise C. Mirabella, Kali Holierhoek, Kristine N. White Ph.D.

Georgia Journal of Science

The subtidal zone is the area below the low tide line that supports a wide variety of organisms, including subtidal crustaceans, which are understudied on Sapelo Island, GA. To investigate the impact of wave action on biodiversity and develop baseline data, the biodiversity of subtidal crustaceans from two beaches was compared. It was hypothesized that the beach protected from wave action would have higher biodiversity than the beach exposed to wave action. To collect the crustaceans, three different sampling methods were used on each beach: D-net, beam trawl, and Yabbi pump. The beach exposed to wave action yielded higher biodiversity …

Origin And Maintenance Of The Andean Bird Fauna, Elkin A. Tenorio

Dissertations, Theses, and Capstone Projects

The origin and maintenance of the tropical montane diversity have been evaluated over multiple decades using various techniques and perspectives. Despite major progress in understanding phylogenetic relationships, diversification patterns, distributional data, and general ecology in the Andean biota, large gaps in our understanding remain, particularly in the synthesis across scales. To fill these gaps, I aimed to explore patterns and processes that underlie species diversification in birds of the tropical Andes of South America by combining different approaches using phenotypic, phylogenetic, and genomic data in multiple temporal and spatial scales.

In the first chapter, I examined the macroevolutionary patterns of …

Assessment Of Bat Species (Mammalia: Chiroptera) In Canubas Cave, Kibawe, Bukidnon, Philippines, Jurriel Mari D. Alce, Jasmine Rouida M. Abenes, Leo Gabriel Cervantes, Matthew Eli K. Llacer, Von Zhyrus P. Oche, Ian Jay P. Saldo, Jhovel Roy D. Calo

Sinaya: A Philippine Journal for Senior High School Teachers and Students

Bats, flying mammals, are essential to ecosystems, playing vital roles in pollination, seed dispersal, and insect control. Despite their ecological importance, no prior bat research exists for Canubas Cave, Kibawe, Bukidnon. This study aimed to assess the bat species at the site, documenting their morphometric data, diversity and richness indices, and conservation statuses. A purposive sampling design was implemented by setting up mist nets inside and outside the cave. A total of 13 individuals were identified, comprising three species from two families: Rousettus amplexicaudatus and Eonycteris spelaea (family Pteropodidae, fruit bats), and Miniopterus schreibersii (family Miniopteridae, bent-winged bats). Based on …

The Effect Of An Invasive Species (Lantana Camara) And A Fast-Growing Herb (Acanthus Pubescens) On The Plant And Animal Communities In Kibale National Park, Uganda, Kathleen Bufka

Theses and Dissertations

Fast-growing plant species, like Lantana camara and Acanthus pubescens, could threaten biodiversity in Kibale National Park, Uganda. I surveyed plants and wildlife in areas where these plants were frequently encountered compared to those areas where they are infrequent. I found mixed results based on plant traits and the animals considered. My findings support management efforts on these two species to prevent forest degradation.

Identification Of Crustose Coralline Algae Species In Florida And Their Ability To Induce Larval Settlement Of Caribbean Corals, Danielle Macias

All HCAS Student Capstones, Theses, and Dissertations

Crustose coralline algae (CCA) are a diverse, globally spread and yet poorly studied group of benthic organisms. They act as settlement cues for coral larvae, but this interaction is often species-specific, as CCA species can be either inducers or inhibitors to larval settlement and metamorphosis. Despite this importance, information on Caribbean CCA distribution, diversity, and impact on coral species is limited due to the difficulty in identifying them. In the present study, CCA samples were collected from seven different reef sites in the southeastern region of Florida’s Coral Reef and genetically identified using molecular analyses. Some of the samples collected …

Crayfish Microhabitats Provide A Close Association With Benthic Microbiomes To Support Cleaning Symbionts., Kyle J. Harris, John Hoverson, Matthew Becker, Matthew M. Cooke Mr

NEXUS: The Liberty Journal of Interdisciplinary Studies

Stream ecosystems promote variable microhabitats along a longitudinal gradient. These microhabitats support dynamic biotic assemblages. One such microhabitat in freshwater streams involves the external surface of crayfish. We investigated the microbiome of crayfish exoskeletons and the surrounding environment (water and substrate) in association with the presence and abundance of crayfish cleaning ectosymbionts (branchiobdellidans). These ectosymbionts actively consume the biofilm on crayfish as they live and reproduce in association with crayfish microhabitats. Sequenced microbes of the environment and crayfish were compared for dominant taxa. While the sample types (water, substrate, and crayfish) had significantly different microbiomes, there was not a significant …

The Factors Affecting The Distribution Of Scorpions (Arachnida: Scorpions) In Iran, Hassan Nasirian

Chulalongkorn Medical Journal

Background: The distribution of scorpions is influenced by various factors that determine their presence and abundance in different regions. Understanding these factors is crucial for comprehending scorpion ecology and predicting their potential impact on ecosystems. Objective: These subtopics aim to provide an overview of the distribution of scorpions within Iran and the factors affecting their distribution, highlighting their ecological preferences and adaptations to different regions.

Methods: Forty-nine documents were collected from well-known indexing services, including Elsevier, Google Scholar, PubMed, ScienceDirect, Scopus, Springer, and Web of Science. After carefully studying the documents, they were classified into specific topics and discussed.

Results: …

Analyzing Human - Nonhuman Primate Conflict Mitigation Techniques In Mto Wa Mbu, Northern Tanzania, Lil Adams

Undergraduate Theses, Capstones, and Recitals

Human-wildlife conflict is a widespread challenge faced by those living in regular contact with wildlife that can have profound impacts on livelihood outcomes for humans, wildlife, and their shared environment (Barua et al., 2013; Blackie, 2023). Human – non-human primate conflict is particularly crucial due to primates’ high capacity to live among human populations (Chapman & Chapman, 1990; Alberts & Altmann, 2006; Reader et al., 2011; Sinha & Vijayakrishnan, 2017), and is currently on the rise due to increasing contact between human and non-human primates (Hockings, 2016; Uddin et al., 2020). To characterize and analyze techniques currently being used to …

Pollinator Plant Communities Within Restored Montane Longleaf Pine Ecosystems, Hanen Van Rossem

Master's Theses

Historically the fire-dependent and biodiverse longleaf pine (Pinus palustris) ecosystem was the dominant ecosystem of the Southeastern US. This ecosystem’s range was massively reduced due to land conversion and fire exclusion, causing the decline of many native species. Efforts to restore and protect longleaf pine stands are now ongoing with the goal of expanding habitat and refuge for threatened species. Differences in restoration practices and prior land use may influence the extent to which restored habitat patches can support pollinators and their plants. This study compared pollinator plant biodiversity between restored neighboring montane longleaf pine stands that differed in …

Advancing Marine Animal Movement Studies Using An Open Innovation Framework, Jacob Levenson

Graduate Doctoral Dissertations

This dissertation investigates the application of open innovation to migratory marine animal movement studies, addressing critical challenges in understanding, managing and ultimately conserving highly mobile and migratory species (HMMS). The species examined herein, including manta rays, sea turtles, and marine mammals, face threats including habitat disruption and behavioral changes to adapt to anthropogenic stressors. Traditional monitoring techniques, while valuable, are often costly, limited in scale, and protected by proprietary intellectual property, all of which decrease accessibility. Ambitious conservation goals, such as protecting 30% of the ocean by 2030, require more data that are indubitably sharable and thus will need to …

Exploring Community Change Of North American Stream Fish Communities Due To Species Introductions, William K. Annis Jr

All Dissertations

The introduction of nonnative species has facilitated global changes in beta diversity, and these changes have been coined biotic homogenization (loss in beta diversity) and differentiation (gain in beta diversity). Homogenization represents a key conservation threat. Therefore it is imperative to understand the processes that allow nonnative species to establish and how these species contribute to beta diversity change. In this dissertation, I assess three key challenges exist in our ability to address these goals. One challenge is that we have inconsistent support among hypotheses of invasion drivers due to context dependency. Context dependency can arise due to differences in …

Contribution To The Knowledge Of Cave-Dwelling Fauna From The Prokletije Mountains, Joanna Kocot-Zalewska, Iwona Słowińska, Paweł Domagała, Jakub Bienias, Dominik Szymański, Dawid Szymański, Hubert Szymański, Paweł Sienkiewicz, Andrzej Józef Woźnica

International Journal of Speleology

The article presents the results of the study on invertebrate fauna inhabiting caves in the Prokletije Mountains. This mountain range is located on the border of Montenegro, Albania, and Kosovo. During the expeditions to Albania in 2021 and to Montenegro in 2022–2023, 17 caves and one bauxite mine were visited altogether. All the studied caves are located very high, above 1,700 m a.s.l., where the temperature inside is low, and several are filled with ice or snow. During the Albanian expedition 102 arthropods have been collected altogether. Among these were 19 beetles (Coleoptera), 44 flies (Diptera), three crickets (Orthoptera), five …

Ecological Studies Of Wolves On Isle Royale, Sarah R. Hoy, John A. Vucetich, Rolf O. Peterson

Ecological Studies of Wolves on Isle Royale

Annual Report 2024-2025

Aerial Phytomass And Carbon Sequestrated By The Kitshanga Forest Massif In The Wamba Valley In Dr-Congo, Mayanu Pemba, Ntalakwa Makolo, Kidikwadi Tango, Lubini Ayingweu

Journal of Bioresource Management

Aerial phytomass and carbon sequestrated by the Kitshanga forest massif in the Wamba valley in DR-Congo. The general objective was to evaluate the aerial phytomass and the carbon contained in the ligneous tissues of the trees. Specifically, the research aims to: (i) inventory all individuals in the Kitshanga gallery forest; (ii) identify the species in the study area; (iii) determine the floristic composition and density of the stand studied and (iv) evaluate the phytomass and the carbon sequestered by this vegetation. Inventory devices full on 1 hectare subdivided by 400 m² to obtain 25 plots which constitute the size of …

Cyanobacteria And Algae From Chýnov And Koněprusy Caves (Czech Republic), Michaela Wipplingerová, Jan Pokorný, Jan Kaštovský

International Journal of Speleology

Algae and cyanobacteria have been studied in two so far phycologically unexplored show caves (Chýnov and Koněprusy) in the Czech Republic. Taxa were identified morphologically using cultivation and subsequent light microscopy, while problematic cyanobacterial species were verified by sequencing the genes for 16S rRNA and 16S–23S internal transcribed spacer. A total of 13 cyanobacterial taxa were found, two Bacillariophyceae, three Xanthophyceae, four Chlorophyceae, six Trebouxiophyceae, 11 Streptophyta, and three Euglenida; many of these species were found for the first time in the caves. The darker parts of the caves were dominated by cyanobacteria, and green algae were found predominantly right …

Measuring Spatial And Temporal Variation In Species Composition Of Ephemeral Pond Amphibian Assemblages Using Metabarcoding, Elizabeth Strasko

Masters Theses & Specialist Projects

Amphibian populations worldwide face severe threats, heightening the need for reliable monitoring methods. In this thesis, I explored and tested environmental DNA (eDNA) metabarcoding protocols to survey amphibian assemblages in ephemeral ponds of the the Green River Preserve in central Kentucky, USA. First, I evaluated whether the commonly used mitochondrial cytochrome c oxidase subunit I (COI) gene could effectively capture species-level variation in local amphibians for eDNA metabarcoding. Extensive primer design and testing revealed significant challenges in amplifying fragmented eDNA from water samples. In a second study, I applied a metabarcoding approach using the mitochondrial 12S ribosomal RNA (12S) gene …

Assessing Genetic Diversity And Population Structure In The Imperiled Aconitum Reclinatum (White Monkshood), An Endemic Wildflower Of Central Appalachia, Diamanda A. Zizis

Master’s Theses

Aconitum reclinatum, white monkshood (Ranunculaceae), is a Pennsylvania critically imperiled plant species found in five states of the Appalachian region of the United States: Pennsylvania, West Virginia, Virginia, North Carolina, and Tennessee. This plant is adapted to cool, moist environments but faces threats from increasing habitat loss, deer browse, logging, and changes in rainfall and temperature associated with climate change. Comprehensive knowledge of A. reclinatum genetic population structure remains limited. To address this, we collaborated with Natural Heritage programs within the range of A. reclinatum to sample populations across the species distribution and generate a genotyping-by-sequencing data set of …

Assessing Arbuscular Mycorrhizal Fungal Community Composition And Diversity Across A Land-Use Gradient In Eastern Washington Prairies, Katherine I. Cole

EWU Masters Thesis Collection

Arbuscular mycorrhizal fungi (AMF) are key to healthy, functioning terrestrial ecosystems worldwide. Associating with over 80% of all extant land plants, they play a pivotal role in nutrient cycling, and contribute to overall plant health. Given their significance to terrestrial ecosystems, AMF have a crucial role to play in the successful restoration of Eastern Washington’s native prairies. However, AMF community composition is significantly altered by the commercial agricultural practices used extensively in this region for over 100 years. The Eastern Washington University (EWU) Prairie Restoration Project aims to restore ~120 acres of farmland to native prairie. This research provides insight …

Microbial And Plant Biodiversity In Appalachian Agroecosystems And Their Implications For Soil Health, Kinsey Reed Close

Graduate Theses, Dissertations, and Problem Reports (ETD)

The sustainability of agricultural landscapes depends on understanding the complex interactions between plants, soil, and microbes. In Appalachia, a region shaped by complex terrain and long histories of human and ecological interaction, small family farms produce hay, livestock, and row crops. These agroecosystems, though often treated as “artificial” by many ecologists, have the potential to support both food production and biodiversity conservation if managed with an understanding of ecological complexity. This dissertation examines how plant and microbial diversity interact with soil and management to influence nutrient cycling, soil health, and long-term resilience in Appalachian agricultural systems. A literature review revealed …

Spatial Analysis Of American Chestnut (Castanea Dentata) Distribution And Ecology In Kentucky’S Federal Lands, Jacob Raymond Pease

Murray State Theses and Dissertations

Anthropogenic factors have been the cause of the decline of tree species across the globe. From unsustainable logging and development to disease and improper management, threats to forests have taken their toll. The American chestnut (Castanea dentata) was once an integral basal tree species in Appalachian forests, but chestnut blight drove the species to functional extinction by the mid-1900s. The recent creation of genetically modified chestnuts gives hope for future restoration of the species throughout its historical range. Despite blight resistance, effective restoration will require optimal site selection for finding and planting chestnuts, which will maximize limited resources. …