Biogeochemistry Commons^™

Nutrient Contamination From Non-Point Sources: Dissolved Phosphate In Surface And Subsurface Waters At Eku Meadowbrook Farm, Madison County, Kentucky, Hunter R. Evans, Reid E. Buskirk, Walter S. Borowski, Jonathan M. Malzone

EKU Faculty and Staff Scholarship

Farms are non-point sources for nutrient contaminants that drain into watersheds and contribute to eutrophication and other environmental problems. Eastern Kentucky University’s Meadowbrook Farm raises both crops and livestock, causing dissolved phosphorus in the form of orthophosphate (PO₄^3-) from fertilizer and animal manure to enter surface and subsurface waters, eventually flowing into Muddy Creek, a tributary of the Kentucky River.

We sampled surface water, springs, and water from French drains that emanate from the farm, and also sampled Muddy Creek waters from May through August 2016. Typically, 1 to 2 days after sampling, we colorimetrically measured dissolved …

The Fate Of Carbon In Sediments Of The Xingu And Tapajós Clearwater Rivers, Eastern Amazon, Dailson J. Bertassoli Jr., André O. Sawakuchi, Henrique O. Sawakuchi, Fabiano N. Pupim, Gelvam A. Hartmann, Michael M. Mcglue, Cristiano M. Chiessi, Matthias Zabel, Enno Schefuß, Tatiana S. Pereira, Rudney A. Santos, Samantha B. Faustino, Paulo E. Oliveira, Denise C. Bicudo

Earth and Environmental Sciences Faculty Publications

The Xingu and Tapajós rivers in the eastern Amazon are the largest clearwater systems of the Amazon basin. Both rivers have “fluvial rias” (i.e., lake-like channels) in their downstream reaches as they are naturally impounded by the Amazon mainstem. Fluvial rias are widespread in the Amazon landscape and most of the sedimentary load from the major clearwater and blackwater rivers is deposited in these channels. So far, little is known about the role of Amazon rias as a trap and reactor for organic sediments. In this study, we used organic and inorganic geochemistry, magnetic susceptibility, diatom, and pollen analyses in …

Multiple Metabolisms Constrain The Anaerobic Nitrite Budget In The Eastern Tropical South Pacific, Andrew R. Babbin, Brian D. Peters, Calvin W. Mordy, Brittany Widner, Karen L. Casciotti, Bess B. Ward

OES Faculty Publications

The Eastern Tropical South Pacific is one of the three major oxygen deficient zones (ODZs) in the global ocean and is responsible for approximately one third of marine water column nitrogen loss. It is the best studied of the ODZs and, like the others, features a broad nitrite maximum across the low oxygen layer. How the microbial processes that produce and consume nitrite in anoxic waters interact to sustain this feature is unknown. Here we used ¹⁵N-tracer experiments to disentangle five of the biologically mediated processes that control the nitrite pool, including a high-resolution profile of nitrogen loss rates. …

Cover Crop Root Contributions To Soil Carbon In A No-Till Corn Bioenergy Cropping System, Emily E. Austin, Kyle Wickings, Marshall D. Mcdaniel, G. Philip Robertson, A. Stuart Grandy

Faculty Publications

Crop residues are potential biofuel feedstocks, but residue removal may reduce soil carbon (C). The inclusion of a cover crop in a corn bioenergy system could provide additional biomass, mitigating the negative effects of residue removal by adding to stable soil C pools. In a no-till continuous corn bioenergy system in the northern US Corn Belt, we used 13CO2 pulse labeling to trace plant C from a winter rye (Secale cereale) cover crop into different soil C pools for 2 years following rye cover crop termination. Corn stover left as residue (30% of total stover) contributed 66, corn roots 57, …

Applying Population And Community Ecology Theory To Advance Understanding Of Belowground Biogeochemistry, Robert W. Buchkowski, Mark A. Bradford, A. Stuart Grandy, Oswald J. Schmitz, William R. Wieder

Faculty Publications

Approaches to quantifying and predicting soil biogeochemical cycles mostly consider microbial biomass and community composition as products of the abiotic environment. Current numerical approaches then primarily emphasise the importance of microbe–environment interactions and physiology as controls on biogeochemical cycles. Decidedly less attention has been paid to understanding control exerted by community dynamics and biotic interactions. Yet a rich literature of theoretical and empirical contributions highlights the importance of considering how variation in microbial population ecology, especially biotic interactions, is related to variation in key biogeochemical processes like soil carbon formation. We demonstrate how a population and community ecology perspective can …

Assessing The Potential To Decrease The Gulf Of Mexico Hypoxic Zone With Midwest Us Perennial Cellulosic Feedstock Production, Andy Vanloocke, Tracy E. Twine, Christopher J. Kucharik, Carl J. Bernacchi

Andy VanLoocke

The goal of this research was to determine the changes in streamflow, dissolved inorganic nitrogen (DIN) leaching and export to the Gulf of Mexico associated with a range of large-scale dedicated perennial cellulosic bioenergy production scenarios within in the Mississippi–Atchafalaya River Basin (MARB). To achieve this goal, we used Agro-IBIS, a vegetation model capable of simulating the biogeochemistry of row crops, miscanthus and switchgrass, coupled with THMB, a hydrology model capable of simulating streamflow and DIN export. Simulations were conducted at varying fertilizer application rates (0–200 kg N ha -1) and fractional replacement (5–25%) of current row crops with miscanthus …

Candidate Perennial Bioenergy Grasses Have A Higher Albedo Than Annual Row Crops, Jesse N. Miller, Andy Vanloocke, Nuria Gomez-Casanovas, Carl J. Bernacchi

Andy VanLoocke

The production of perennial cellulosic feedstocks for bioenergy presents the potential to diversify regional economies and the national energy supply, while also serving as climate ‘regulators’ due to a number of biogeochemical and biogeophysical differences relative to row crops. Numerous observational and model-based approaches have investigated biogeochemical trade-offs, such as increased carbon sequestration and increased water use, associated with growing cellulosic feedstocks. A less understood aspect is the biogeophysical changes associated with the difference in albedo (a), which could alter the local energy balance and cause local to regional cooling several times larger than that associated with offsetting carbon. Here, …

Reconciling Opposing Soil Processes In Row-Crop Agroecosystems Via Soil Functional Zone Management, Alwyn Williams, Adam S. Davis, Andrea Jilling, A. Stuart Grandy, Roger T. Koide, David A. Mortensen, Richard G. Smith, Sieglinde S. Snapp, Kurt A. Spokas, Anthony C. Yannarell, Nicholas R. Jordan

Faculty Publications

Sustaining soil productivity in agricultural systems presents a fundamental agroecological challenge: nutrient provisioning depends upon aggregate turnover and microbial decomposition of organic matter (SOM); yet to prevent soil depletion these processes must be balanced by those that restore nutrients and SOM (soil building processes). These nutrient provisioning and soil building processes are inherently in conflict; management practices that create spatial separation between them may enable each to occur effectively within a single growing season, thereby supporting high crop yield while avoiding soil depletion. Soil functional zone management (SFZM), an understudied but increasingly adopted strategy for annual row-crop production, may help …

Analysis Of Microbial Diversity In Disturbed Soil, Tyler G. Sanda

Williams Honors College, Honors Research Projects

This paper uses the composition and abundance of microbial species to analyze soil recovery in disturbed land. Surface mining disturbs ecological communities throughout the world. As organizations seek to reclaim these disturbed lands, a proper analysis of recovery is needed. In previous studies, recovery of disturbed land was limited to surface examinations, which do not characterize the possible unseen devastating effects of the subsoil. Soil microorganisms are extremely sensitive to environmental changes such as strip mining. It is proposed that these microorganisms may serve as better indicators of recovery post disturbance. Our analysis indicates microbial recovery, however it may not …

Structural Basis Of Membrane Protein Scaffolding And Signaling In Human Disease, Joshua Holcomb

Wayne State University Dissertations

Protein structural elucidation by means of X-ray crystallography is a powerful approach for both insight into a proteins biophysical properties and function. To date X-ray crystallography remains the gold standard in high resolution structural determination and serves as the basis for rational drug design for the purpose of combating a number of human diseases. Such an approach also allows for the exploitation of how various proteins interact with their substrates providing a molecular basis for their physiological function. In this dissertation, using X-ray crystallographic analysis along with other biophysical characterization methods, we seek to understand the mechanistic foundation for which …

Temporal Variability Of Fluorescent Dissolved Organic Matter At A Brackish, Tidal Marsh-Estuary Interface, Alana B. Menendez

Dissertations and Theses

Marshes are both terrestrial and aqueous, sitting as an intermediate between land and water. Studies over constrained numbers of tidal cycles have demonstrated that these marshes are net exporters of dissolved organic carbon (DOC) to adjoining estuaries, however, there is need for continuous monitoring to better understand the temporal variability of this flux: tidally, seasonally, and during episodic rain events. Through use of a YSI EXO2 sonde, an in situ optical sensor at the interface of the brackish, tidal Kirkpatrick Marsh and Rhode River sub-estuary in Edgewater, Maryland (located on the northwestern shore of the Chesapeake Bay), we were able …

The Role Of Seabed Resuspension On Oxygen And Nutrient Dynamics In Coastal Systems: A Numerical Modeling Study, Julia Miege Moriarty

Dissertations, Theses, and Masters Projects

Seabed resuspension can impact organic matter fate and water column biogeochemistry in coastal environments. Cycles of erosion and deposition can, for example, affect remineralization rates, seabed-water column fluxes of dissolved oxygen and nutrients, and light attenuation. Yet, models that incorporate both sediment transport and biogeochemical processes are rare, and nearly all neglect the effect of resuspension on oxygen and nutrient dynamics. Development of a novel tool, i.e. a coupled hydrodynamic-sediment transport-biogeochemical model, allowed for an investigation of the role of resuspension on oxygen and nitrogen dynamics within three distinct coastal environments. Called HydroBioSed, the coupled model was built within the …

Effects Of Silvopasture Establishment On Aqueous And Gaseous Soil N Losses At The University Of New Hampshire Organic Dairy Research Farm, Kathryn Ann Slebodnik

Honors Theses and Capstones

The expansion of local agriculture in the New England region is putting increased pressure on farmers to expand their arable land base. While clear-cutting is a traditional method of converting forested land to agriculture, it is known for having adverse ecological impacts. To minimize these impacts, farmers can create a silvopasture which incorporates a portion of the original forest canopy into pastures or crop fields. This study evaluates the impact of land-use changes for agriculture on soil nitrogen (N) retention. In particular, this study investigates the differences in soil N turnover, gaseous loss, and aqueous loss among an established forest, …

Ocean Acidification Compromises A Planktic Calcifier With Implications For Global Carbon Cycling, Cv Davis, Emily B. Rivest, Et Al

VIMS Articles

Anthropogenically-forced changes in ocean chemistry at both the global and regional scale have the potential to negatively impact calcifying plankton, which play a key role in ecosystem functioning and marine carbon cycling. We cultured a globally important calcifying marine plankter (the foraminifer, Globigerina bulloides) under an ecologically relevant range of seawater pH (7.5 to 8.3 total scale). Multiple metrics of calcification and physiological performance varied with pH. At pH > 8.0, increased calcification occurred without a concomitant rise in respiration rates. However, as pH declined from 8.0 to 7.5, calcification and oxygen consumption both decreased, suggesting a reduced ability to precipitate …

Rock Magnetic Investigation Of The Michigan Basin Soils And Sediments Overlying The Oil-Bearing Silurian Pinnacle Reefs, Jake Tresnak

Dissertations, Master's Theses and Master's Reports

A relationship between the hydrocarbon migration and magnetic properties of near-surface sediments was investigated from several hundreds of samples collected over the hydrocarbon-bearing Silurian pinnacle reef belt of the Michigan Basin. The collected samples were investigated using several rock magnetic methods and optical microscopy. The investigation has not revealed a straightforward relationship between the magnetic susceptibility and hydrocarbon reservoirs within the reef belt; both anomalously high and low susceptibility values were observed. The elevated values are associated with newly formed magnetite in the form of spheroidal grains produced by hydrocarbon-related diagenesis while the extremely low susceptibilities may reflect dissolution of …

Using High-Resolution Glider Data And Biogeochemical Modeling To Investigate Phytoplankton Variability In The Ross Sea, Daniel Edward Kaufman

Dissertations, Theses, and Masters Projects

As Earth’s climate changes, polar environments experience a disproportionate share of extreme shifts. Because the Ross Sea shelf has the highest annual productivity of any Antarctic continental shelf, this region is of particular interest when striving to characterize current and future changes in Antarctic systems. However, understanding of mesoscale variability of biogeochemical patterns in the Ross Sea and how this variability affects assemblage dynamics is incomplete. Furthermore, it is unknown how the Ross Sea may respond to projected warming, reduced summer sea ice concentrations, and shallower mixed layers during the next century. to investigate these dynamics and explore their consequences …

Impact Of Climate Change Variables On Nutrient Cycling By Marine Microorganisms In The Southern California Bight And Ross Sea, Antarctica, Jenna Lee Spackeen

Dissertations, Theses, and Masters Projects

Ocean environments are being impacted by climate warming, elevated carbon dioxide (CO2) levels, and shifting nutrient sources and sinks. It is essential to quantify the sensitivity of microorganisms to these effects of global change because they form the base of the marine food web and are an integral component of nutrient cycling on the planet. their role in photosynthesis, nutrient uptake, and transfer of organic matter into higher trophic levels or to the deep ocean via the biological pump render microorganisms key in ecosystem structure and function and in regulating the global climate. The goal of this dissertation research was …

Marsh-Exported Dissolved Organic Matter Fate In Estuaries, Laura Ann Logozzo

Dissertations and Theses

Dissolved organic matter (DOM) is a significant driver of estuarine productivity and nutrient cycling. The colored component of DOM, chromophoric dissolved organic matter (CDOM), impacts coastal optical properties, ocean color, and light attenuation. While marshes are largely considered sinks for carbon due to their high productivity and low soil carbon degradation rates, laterally they are sources of carbon as optically and chemically distinct DOM to surrounding aquatic ecosystems; these inputs are often essential in sustaining a net heterotrophic system. However, the photoreactivity and bioavailability of marsh-exported DOM is largely uncategorized, thus making it difficult to quantify its impacts on estuarine …

Nitrate Loading In The Saw Kill Watershed: Small Watershed Nutrient Dynamics, Answering A Community Question, And Assessing Methodological Approaches, Marco Sebastian Spodek

Senior Projects Spring 2017

Biogeochemical cycles mitigate the movement of nutrients through ecosystems at a variety of scales. Within aquatic systems, nitrogen (N) and phosphorus (P) are especially critical due to their high influence on primary production and decomposition. However, in excess, N and P can pose hazardous ecological effects downstream. Excessive loading of both N and P to waterways can facilitate harmful algal blooms or dead zones in reservoirs and at drainage points. Extensive research over the past half century has shown that the majority of nutrient loading to aquatic systems is the result of anthropogenic land use. While the effects of these …

A Multi-Faceted Biogeochemical Approach To Analyzing Hypoxia In Green Bay, Lake Michigan, Shelby Labuhn

Theses and Dissertations

Green Bay, Lake Michigan is a large freshwater estuary that has experienced seasonal hypoxia for decades. Hypoxia, or dissolved oxygen concentrations less than 2 mg L-1, is a problem in coastal ecosystems around the world because it has a negative impact on ecosystem health by decreasing biodiversity and fisheries. In order to create adequate management policies for hypoxia, it is important to understand the sources and sinks of oxygen within Green Bay. This study utilizes a number of traditional and novel field methods to measure the production and respiration of oxygen within lower Green Bay, defined as south of Chambers …