Non-linear Dynamics Commons^™

Pathogen Emergence As Complex Biological Invasion: Lessons From Dynamical Systems Modeling, Sudam Surasinghe, Marisabel Rodriguez, Victor Meszaros, Jane Molofksy, Salvador Almagro-Moreno, Brandon Ogbunugafor

Northeast Journal of Complex Systems (NEJCS)

Infectious disease emergence has become the target of cross-disciplinary efforts
that aim to understand and predict the shape of outbreaks. The many challenges
involved with the prediction of disease emergence events is a characteristic that in-
fectious diseases share with biological invasions in many subfields of ecology (e.g.,
how certain plants are able to successfully invade a new niche). Like infectious
diseases, biological invasions by plants and animals involve interactions between
agents (pathogens and plants in their respective cases) and a recipient niche. In
this study, we examine the problem of pathogen emergence through the lens of a
framework first …

Temporality-Induced Chaos In The Kuramoto Model, Keanu Mason Rock, Hamza Dirie, Sean P. Cornelius

Northeast Journal of Complex Systems (NEJCS)

Switched dynamical systems have been extensively studied in engineering literature in the context of system control. In these systems, the dynamical laws change between different subsystems depending on the environment, a process that is known to produce emergent behaviors---notably chaos. These dynamics are analogous to those of temporal networks, in which the network topology changes over time, thereby altering the dynamics on the network. It stands to reason that temporal networks may therefore produce emergent chaos and other exotic behaviors unanticipated in static networks, yet concrete examples remain elusive. Here, we present a minimal example of a networked system in …

Complex-Valued Approach To Kuramoto-Like Oscillators, Jacqueline Bao Ngoc Doan

Electronic Thesis and Dissertation Repository

The Kuramoto Model (KM) is a nonlinear model widely used to model synchrony in a network of oscillators – from the synchrony of the flashing fireflies to the hand clapping in an auditorium. Recently, a modification of the KM (complex-valued KM) was introduced with an analytical solution expressed in terms of a matrix exponential, and consequentially, its eigensystem. Remarkably, the analytical KM and the original KM bear significant similarities, even with phase lag introduced, despite being determined by distinct systems. We found that this approach gives a geometric perspective of synchronization phenomena in terms of complex eigenmodes, which in turn …

Computing Brain Networks With Complex Dynamics, Anca R. Radulescu

Biology and Medicine Through Mathematics Conference

No abstract provided.

Machine Learning-Based Data And Model Driven Bayesian Uncertanity Quantification Of Inverse Problems For Suspended Non-Structural System, Zhiyuan Qin

All Dissertations

Inverse problems involve extracting the internal structure of a physical system from noisy measurement data. In many fields, the Bayesian inference is used to address the ill-conditioned nature of the inverse problem by incorporating prior information through an initial distribution. In the nonparametric Bayesian framework, surrogate models such as Gaussian Processes or Deep Neural Networks are used as flexible and effective probabilistic modeling tools to overcome the high-dimensional curse and reduce computational costs. In practical systems and computer models, uncertainties can be addressed through parameter calibration, sensitivity analysis, and uncertainty quantification, leading to improved reliability and robustness of decision and …

Modeling, Simulation And Control Of Microrobots For The Microfactory., Zhong Yang

Electronic Theses and Dissertations

Future assembly technologies will involve higher levels of automation in order to satisfy increased microscale or nanoscale precision requirements. Traditionally, assembly using a top-down robotic approach has been well-studied and applied to the microelectronics and MEMS industries, but less so in nanotechnology. With the boom of nanotechnology since the 1990s, newly designed products with new materials, coatings, and nanoparticles are gradually entering everyone’s lives, while the industry has grown into a billion-dollar volume worldwide. Traditionally, nanotechnology products are assembled using bottom-up methods, such as self-assembly, rather than top-down robotic assembly. This is due to considerations of volume handling of large …

The Magnetic Field Of Protostar-Disk-Outflow Systems, Mahmoud Sharkawi

Electronic Thesis and Dissertation Repository

Recent observations of protostellar cores reveal complex magnetic field configurations that are distorted in the innermost disk region. Unlike the prestellar phase, where the magnetic field geometry is simpler with an hourglass configuration, magnetic fields in the protostellar phase are sculpted by the formation of outflows and rapid rotation. This gives rise to a significant azimuthal (or toroidal) component that has not yet been analytically modelled in the literature. Moreover, the onset of outflows, which act as angular momentum transport mechanisms, have received considerable attention in the past few decades. Two mechanisms: 1) the driving by the gradient of a …

Fourth Order Dispersion In Nonlinear Media, Georgios Tsolias

Doctoral Dissertations

In recent years, there has been an explosion of interest in media bearing quartic
dispersion. After the experimental realization of so-called pure-quartic solitons, a
significant number of studies followed both for bright and for dark solitonic struc-
tures exploring the properties of not only quartic, but also setic, octic, decic etc.
dispersion, but also examining the competition between, e.g., quadratic and quartic
dispersion among others.
In the first chapter of this Thesis, we consider the interaction of solitary waves in
a model involving the well-known φ⁴ Klein-Gordon theory, bearing both Laplacian and biharmonic terms with different prefactors. As a …

Vibrations Reduction Of A Clamped- Clamped Micro-Beam Via Positive Position Feedback Controller, H. Mosaa, M. Kamel, H. El Gohry, L. S. Diab, H. M. Shawky

Al-Azhar Bulletin of Science

This manuscript displays the vibrations reduction of a clamped- clamped micro-beam subjected to an excitation external force via applying the positive position feedback (PPF) controller. The approximate solutions of the whole system are obtained up to the second order approximation with the help of the multiple scale perturbation technique (MSP). The Stability analysis is studied by utilizing the frequency response equations near the simultaneous condition .Time histories and response curves figures before and after control of the whole system are examined numerically using Rung-Kutta Fourth-order method (Maple(16) software and Matlab 7.7(R2014) software. Numerical results of the influences of different parameters …

Innovations In Drop Shape Analysis Using Deep Learning And Solving The Young-Laplace Equation For An Axisymmetric Pendant Drop, Andres P. Hyer

Theses and Dissertations

Axisymmetric Drop Shape Analysis (ADSA) is a technique commonly used to determine surface or interfacial tension. Applications of traditional ASDA methods to process analytical technologies are limited by computational speed and image quality. Here, we address these limitations using a novel machine learning approach to analysis. With a convolutional neural network (CNN), we were able to achieve an experimental fit precision of (+/-) 0.122 mN/m in predicting the surface tension of drop images at a rate of 1.5 ms^-1 versus 7.7 s^-1, which is more than 5,000 times faster than the traditional method. The results are validated on real images …

On The Spatial Modelling Of Biological Invasions, Tedi Ramaj

Electronic Thesis and Dissertation Repository

We investigate problems of biological spatial invasion through the use of spatial modelling. We begin by examining the spread of an invasive weed plant species through a forest by developing a system of partial differential equations (PDEs) involving an invasive weed and a competing native plant species. We find that extinction of the native plant species may be achieved by increasing the carrying capacity of the forest as well as the competition coefficient between the species. We also find that the boundary conditions exert long-term control on the biomass of the invasive weed and hence should be considered when implementing …

The Nonlinearity Of Regulation In Biological Networks, Santosh Manicka, Kathleen Johnson, Michael Levin, David Murrugarra

Annual Symposium on Biomathematics and Ecology Education and Research

No abstract provided.

A Kuramoto Model Approach To Predicting Chaotic Systems With Echo State Networks, Sophie Wu, Jackson Howe

Undergraduate Student Research Internships Conference

An Echo State Network (ESN) with an activation function based on the Kuramoto model (Kuramoto ESN) is implemented, which can successfully predict the logistic map for a non-trivial number of time steps. The reservoir in the prediction stage exhibits binary dynamics when a good prediction is made, but the oscillators in the reservoir display a larger variability in states as the ESN’s prediction becomes worse. Analytical approaches to quantify how the Kuramoto ESN’s dynamics relate to its prediction are explored, as well as how the dynamics of the Kuramoto ESN relate to another widely studied physical model, the Ising model.

Travelling Wave Solutions On A Cylindrical Geometry, Karnav R. Raval

Undergraduate Student Research Internships Conference

Fluid equations are generally quite difficult and computationally-expensive to solve. However, if one is primarily interested in how the surface of the fluid deforms, we can re-formulate the governing equations purely in terms of free surface variables. Reformulating equations in such a way drastically cuts down on computational cost, and may be useful in areas such as modelling blood flow. Here, we study one such free-boundary formulation on a cylindrical geometry.

Modeling Empirical Stock Market Behavior Using A Hybrid Agent-Based Dynamical Systems Model, Daniel A. Cline, Grant T. Aguinaldo, Christian Lemp

Northeast Journal of Complex Systems (NEJCS)

We describe the development and calibration of a hybrid agent-based dynamical systems model of the stock market that is capable of reproducing empirical market behavior. The model consists of two types of trader agents, fundamentalists and noise traders, as well as an opinion dynamic for the latter (optimistic vs. pessimistic). The trader agents switch types stochastically over time based on simple behavioral rules. A system of ordinary differential equations is used to model the stock price as a function of the states of the trader agents. We show that the model can reproduce key stylized facts (e.g., volatility clustering and …

Universality And Synchronization In Complex Quadratic Networks (Cqns), Anca R. Radulescu, Danae Evans

Biology and Medicine Through Mathematics Conference

No abstract provided.

Effects Of Local Mutations In Quadratic Iterations, Anca R. Radulescu, Abraham Longbotham

Biology and Medicine Through Mathematics Conference

No abstract provided.

Thoracoabdominal Asynchrony In A Virtual Preterm Infant: Computational Modeling And Analysis, Richard R. Foster, Laura Ellwein Fix

Biology and Medicine Through Mathematics Conference

No abstract provided.

A Novel Method For Sensitivity Analysis Of Time-Averaged Chaotic System Solutions, Christian A. Spencer-Coker

Theses and Dissertations

The direct and adjoint methods are to linearize the time-averaged solution of bounded dynamical systems about one or more design parameters. Hence, such methods are one way to obtain the gradient necessary in locally optimizing a dynamical system’s time-averaged behavior over those design parameters. However, when analyzing nonlinear systems whose solutions exhibit chaos, standard direct and adjoint sensitivity methods yield meaningless results due to time-local instability of the system. The present work proposes a new method of solving the direct and adjoint linear systems in time, then tests that method’s ability to solve instances of the Lorenz system that exhibit …

The Gelfand Problem For The Infinity Laplacian, Fernando Charro, Byungjae Son, Peiyong Wang

Mathematics Faculty Research Publications

We study the asymptotic behavior as p → ∞ of the Gelfand problem

−Δ_pu = λe^u in Ω ⊂ Rⁿ, u = 0 on ∂Ω.

Under an appropriate rescaling on u and λ, we prove uniform convergence of solutions of the Gelfand problem to solutions of

min{|∇_u|−Λe^u, −Δ_∞u} = 0 in Ω, u = 0 on ∂Ω.

We discuss existence, non-existence, and multiplicity of solutions of the limit problem in terms of Λ.