Horticulture Commons^™

Identification Of Putative Snp Markers Associated With Resistance To Egyptian Loose Smut Race(S) In Spring Barley, Kamal A.M. Abo-Elyousr, Amira M.I. Mourad, P. Stephen Baenziger, Abdelaal H.A. Shehata, Peter E. Eckstein, Aaron D. Beattie, Ahmed Sallam

Agronomy & Horticulture -- Faculty Publications

Loose smut (LS) disease is a serious problem that affects barley yield. Breeding of resistant cultivars and identifying new genes controlling LS has received very little attention. Therefore, it is important to understand the genetic basis of LS control in order to genetically improve LS resistance. To address this challenge, a set of 57 highly diverse barley genotypes were inoculated with Egyptian loose smut race(s) and the infected seeds/plants were evaluated in two growing seasons. Loose smut resistance (%) was scored on each genotype. High genetic variation was found among all tested genotypes indicating considerable differences in LS resistance that …

Sorghum Association Panel Whole-Genome Sequencing Establishes Cornerstone Resource For Dissecting Genomic Diversity, J. Lucas Boatwright, Sirjan Sapkota, Hongyu Jin, James C. Schnable, Zachary Brenton, Richard Boyles, Stephen Kresovich

Agronomy & Horticulture -- Faculty Publications

Association mapping panels represent foundational resources for understanding the genetic basis of phenotypic diversity and serve to advance plant breeding by exploring genetic variation across diverse accessions. We report the whole-genome sequencing (WGS) of 400 sorghum (Sorghum bicolor (L.) Moench) accessions from the Sorghum Association Panel (SAP) at an average coverage of 38× (25–72×), enabling the development of a high-density genomic marker set of 43 983 694 variants including single-nucleotide polymorphisms (approximately 38 million), insertions/deletions (indels) (approximately 5 million), and copy number variants (CNVs) (approximately 170 000). We observe slightly more deletions among indels and a much higher prevalence …

Recombination Hotspots In Soybean [Glycine Max (L.) Merr.], Samantha J. Mcconaughy

Theses, Dissertations, and Student Research in Agronomy and Horticulture

Recombination allows for the exchange of genetic material between two parents which plant breeders exploit to make new and improved varieties. This recombination is not distributed evenly across the chromosome. In crops, it mostly occurs in the euchromatic regions of the genome and even then, recombination is focused into recombination hotspots flanked by recombination cold spots. Understanding the distribution of these hotspots along with the sequence motifs associated with them may lead to methods that enable breeders to better exploit recombination in breeding.

In chapter 1 background information on recombination, recombination hotspots detection methods, landscape of recombination (describe recombination patterns …

Extending The Garden Season, Taun Beddes, Michael Caron, Sheriden M. Hansen, Jaydee Gunnell

All Current Publications

Many homeowners have the dream of growing fresh vegetables year-round. Unfortunately, in colder climates, this is only possible using a complete greenhouse with supplemental heating/cooling and lights. Greenhouses can be excessively expensive to maintain and heat, making them impractical for most homeowners. This is not only due to cold winter temperatures but shorter day lengths and lower available light that must be offset artificially. There are practical, less expensive ways to obtain self-grown produce earlier and later in the growing season, though, by using season-extending techniques. These include using equipment such as cold frames, high tunnels, low tunnels, floating row …

Water-Wise Landscape Ideas For Existing Landscapes, Shital Poudyal

All Current Publications

This fact sheet outlines five easy ways to convert an existing landscape to a water-wise landscape without substantial renovation for those who do not have the time, resources, or expertise to renovate the existing landscape completely.

A Common Garden Experiment Suggests Local Adaptation In Stomata Size But Not Stomata Density In Common Milkweed (Asclepias Syriaca), Alyssa Gundel

Undergraduate Theses and Capstone Projects

Local adaptation is a common process that occurs in organisms with wide geographic ranges to maximize fitness in different environments. One specific species that has been shown to have certain locally adapted traits is Common Milkweed, Asclepias syriaca. A handful of these traits include height, stem count, number of leaves, and length and width of the leaves. The size and density of stomata, the pores underneath the leaf used for gas exchange and transpiration, may also be influenced by environmental conditions; however, this relationship has not been studied in common milkweed. In order to analyze population-level differences in the density …

Effects Of Pruning Timing, Leaf Removal, And Shoot Thinning On 'Midsouth' Winegrape Quality In South Mississippi, Haley Nicole Williams

Theses and Dissertations

‘MidSouth’, a relatively low maintenance interspecific hybrid bunch grape currently grown in South Mississippi, has low sugar and high acid levels for red wine use. Two studies, conducted at the Mississippi State University McNeill Research Unit in 2020 and 2021, determined the effects of pruning timing, leaf removal, and shoot thinning on ‘MidSouth’ development and fruit and wine quality. Treatments in the first study included early versus normal pruning timing, both with and without leaf removal, and treatments in the second study included leaf removal, shoot thinning, and control vines. Cluster temperatures, leaf chlorophyll, berries per cluster, berry and cluster …

Wayne E. Sabbe Arkansas Soil Fertility Studies 2021, Nathan A. Slaton

Arkansas Agricultural Experiment Station Research Series

Rapid technological changes in crop management and production require that the research efforts be presented in an expeditious manner. The contributions of soil fertility and fertilizers are major production factors in all Arkansas crops. The studies described within will allow producers to compare their practices with the university’s research efforts. Additionally, soil-test data and fertilizer sales are presented to allow comparisons among years, crops, and other areas within Arkansas.

Economic Viability Of Weed Management Strategies In High-Tunnel Tomato, Gracie Morrison

Crop, Soil and Environmental Sciences Undergraduate Honors Theses

Cost-effective weed suppression is an important consideration for tomato growers. Growers often choose methods which minimize hand labor, as hand weeding can be prohibitively expensive. This project determined economic viability of high tunnel tomatoes treated with several methods of weed control, both organic and chemical. These methods included: 2-week hand weeding, 1-week hand weeding, preemergent, straw, landscape fabric, and untreated weedy control plots. These treatments were applied to randomized blocks in a high-tunnel. Weeding, planting, and harvest were all timed to determine labor and material costs of weed management strategy implementation. After harvest, marketable yield was weighed to determine revenue. …

An Investigation Of Factors Affecting The Rooting Ability Of Hardwood Muscadine Cuttings And Genetic Diversity Of Wild And Cultivated Muscadine Grapes (Vitis Rotundifolia Michx.), Kenneth Buck

Graduate Theses and Dissertations

The muscadine (Vitis rotundifolia syn. Muscadinia rotundifolia) is a grape species native to the southeastern United States. Muscadines are one of three grape species in subgenus Muscadinia with a chromosome number of 2n=40 (V. rotundifolia, V. munsoniana, and V. popenoei), making them genetically distinct from the European wine and table grape (Vitis vinifera) and other species in subgenus Euvitis. Rooting hardwood cuttings from muscadine vines has traditionally been considered an exceptionally difficult task. Many previous studies observed almost no root formation, leading to a general consensus that muscadines should either be propagated by softwood cuttings or vegetative layering. However, the …

Research Report: High Tunnel Tomato Fruit Cluster Pruning, Caterina Roman, Rebecca G. Sideman

Faculty Publications

Tomatoes are a high value crop grown worldwide. Indeterminate varieties are commonly grown in high tunnel structures throughout New England for the fresh market. Indeterminate tomato plants often suffer from a phenomenon called ‘June drop’ in which the plant’s first four to five cluster of fruit set perfectly but the subsequent two to three clusters have poor set and plant productivity drops suddenly. While cluster thinning (e.g., reducing the number of fruit allowed to mature per cluster) has been successfully shown to increase fruit size, it has generally not increased marketable yield. We hypothesized that reducing the fruit load by …

Evaluation, Characterization, And Utilization Of Weed-Suppressive Sweetpotato Cultivars For Sustainable Weed Management, Isabel Schlegel Werle

Graduate Theses and Dissertations

Sweetpotato (Ipomoea batatas L.) is a low-technology, subsistence crop that enhances food and nutrition security particularly in developing nations. Weed interference with the crop can reduce sweetpotato storage root yields and product quality. Current weed management practices in sweetpotato include PRE or POST herbicides application, cultivation, mowing, or handweeding. Unlike row crops, herbicide options for sweetpotato are few; therefore, alternative weed control practices are needed. The overall objective of this research was to determine the weed suppressive ability of several sweetpotato cultivars. This research also provides information about cover crop use for weed suppression in sweetpotato production in Arkansas. Field …

Managing Stress Tolerance On Warm-Season Putting Greens In The Transition Zone, Thomas Edward Walton

Graduate Theses and Dissertations

The use of warm-season putting greens in the transition zone has increased in recent years. Ultradwarf bermudagrass (Cynodon dactylon (L.) Pers x C. transvaalensis Burtt-Davy) is the most prevalent warm-season putting green selection in the transition zone, however, newly developed greens-type zoysiagrass (Zoysia spp.) cultivars represent another potential selection for golf courses. The two major limitations of warm-season grasses in the transition zone are a general lack of cold- and shade-tolerance. Protective covers are essential to protect ultradwarf bermudagrass putting greens in the winter months. Unfortunately, golf courses can still experience winterkill underneath protective covers. Two field trials were conducted …

Genetic Control Of Prickles And Plant Height In Blackberry, Carmen Johns

Graduate Theses and Dissertations

The fresh-market blackberry (Rubus L. subgenus Rubus Watson) industry has been expanding for the past two decades. Blackberry market growth can be attributed to many factors including expanded production regions, improved production systems, and release of superior cultivars. Blackberry breeding is a time- and labor-intensive process which would benefit from implementation of molecular markers for highly heritable, important traits. Next generation sequencing, a high-quality reference genome, and software capable of analyzing this complex genome were applied in a genome-wide association study (GWAS) to reveal maker-trait associations related to prickles and plant height variation in fresh-market blackberry. In 2020 and 2021, …

Chromosome-Level Thlaspi Arvense Genome Provides New Tools For Translational Research And For A Newly Domesticated Cash Cover Crop Of The Cooler Climates, Adam Nunn, Isaac Rodríguez-Arévalo, Zenith Tandukar, Katherine Anna Frels, Adrián Contreras-Garrido, Pablo Carbonell-Bejerano, Panpan Zhang, Daniela Ramos Cruz, Katharina Jandrasits, Christa Lanz, Anthony Brusa, Marie Mirouze, Kevin Dorn, David W. Galbraith, Brice A. Jarvis, John C. Sedbrook, Donald L. Wyse, Christian Otto, David Langenberger, Peter F. Stadler, Detlef Weigel, M. David Marks, James A. Anderson, Claude Becker, Ratan Chopra

Agronomy & Horticulture -- Faculty Publications

Thlaspi arvense (field pennycress) is being domesticated as a winter annual oilseed crop capable of improving ecosystems and intensifying agricultural productivity without increasing land use. It is a selfing diploid with a short life cycle and is amenable to genetic manipulations, making it an accessible field-based model species for genetics and epigenetics. The availability of a high-quality reference genome is vital for understanding pennycress physiology and for clarifying its evolutionary history within the Brassicaceae. Here, we present a chromosome-level genome assembly of var. MN106-Ref with improved gene annotation and use it to investigate gene structure differences between two accessions (MN108 …

Integration Of Medicinal Fungi Into The Heber W. Youngken Jr. Medicinal Garden, Anthony Makashov

Senior Honors Projects

The Heber W. Youngken Jr. Medicinal Garden is a one-of-a-kind resource that houses close to 300 medicinal plants and is filled to the brim with educational opportunities. For the College of Pharmacy, this garden has been the centerpiece of many classes taught here at the University of Rhode Island and has roots as a physical teaching space. While the garden contains a plethora of plant species, medicinal fungi have yet to have been included in the garden, despite their relevance as both sources of pharmaceutical drug discovery and as natural products with inherent physiological benefits themselves. The purpose of my …

Regional Plant Community Differences In The Nebraska Sandhills, Travis Millikan

Theses, Dissertations, and Student Research in Agronomy and Horticulture

The Nebraska Sandhills is very valuable to the state of Nebraska, representing one of the most in-tact and largest grassland ecosystems in temperate regions in the world. Rangeland managers must understand plant community dynamics across the Sandhills to better inform management decisions. The first objective of this study was to evaluate plant community variability on upland Sands ecological sites across different precipitation zones in the Nebraska Sandhills. The second objective of our study was to utilize the Rangeland Analysis Platform (RAP) to examine spatial and temporal variability in biomass production and cover on pastures of ranches analyzed in the first …

Implementing Landscape Design Principles To Improve Green Spaces And Promote Ecotherapy On A College Campus, Jessica Hutchinson

Honors College

As students in Maine are subject to harsh winters and a disconnectedness due to the pandemic, the creation of an ecotherapy focused garden may benefit the community at the University of Maine. Mental health is a rising concern within the United States, where anxiety has been the most frequent in students at 62.7% from a survey conducted by the Center for Collegiate Mental Health (Son et al., 2020). Ecotherapy is the practice of holistic psychology where healing is derived from interactions with the surrounding ecosystem (Summers and Vivian, 2018). Through literature review and gardening, this creative project provides a green …

Abiotic Disorders Of Tomatoes, Nick Volesky, Marion Murray, Sheriden M. Hansen, Maegen A. Lewis

All Current Publications

Monitoring tomato plants regularly from seedling to harvest allows for early detection of abnormal conditions. Although tomato plants can be attacked by a variety of living organisms (insects, mites, pathogens, vertebrates), nonliving (abiotic) conditions can cause just as much damage. Abiotic diseases in tomato plants can arise from nutrient deficiencies, temperature extremes, abnormal lighting, chemical application, changes in water uptake, mechanical damage, genetic mutations, and more. This guide will cover most of the abiotic disorders and diseases that can affect tomatoes in Utah.

Agricultural Intensification Can Help Protect The Amazon Forest And Reduce Global Warming / Protecting The Amazon Forest And Reducing Global Warming Via Agricultural Intensification, Fabio R. Marin, Alencar J. Zanon, Juan P. Monzon, José F. Andrade, Evandro H.F.M. Silva, Gean L. Richter, Luis A.S. Antolin, Bruna S.M.R. Ribeiro, Giovanna G. Ribas, Rafael Battisti, Alexandre B. Heinemann, Patricio Grassini

Agronomy & Horticulture -- Faculty Publications

The Amazon basin includes 550 M ha covered with rainforests, with 60% of this area being in Brazil. Conversion of rainforest for soybean production raises concerns about the degree to which Brazil can reconcile production and environmental goals. Here we investigated the degree to which intensification could help Brazil produce more soybean without further encroachment of the Amazon Forest. Our analysis shows that continuation of current trends in soybean yield and area would lead to conversion of additional 5.7 M ha of forests and savannas during the next 15 years, with an associated 2550 Mt of CO2eq released into the …