Open Access. Powered by Scholars. Published by Universities.®

Systems Neuroscience Commons

Open Access. Powered by Scholars. Published by Universities.®

190 Full-Text Articles 320 Authors 23,786 Downloads 39 Institutions

All Articles in Systems Neuroscience

Faceted Search

190 full-text articles. Page 1 of 7.

Mapping Molecular Datasets Back To The Brain Regions They Are Extracted From: Remembering The Native Countries Of Hypothalamic Expatriates And Refugees, Arshad M. Khan, Alice H. Grant, Anais Martinez, Gully APC Burns, Brendan S. Thatcher, Vishwanath T. Anekonda, Benjamin W. Thompson, Zachary S. Roberts, Daniel H. Moralejo, James E. Blevins 2018 University of Texas at El Paso

Mapping Molecular Datasets Back To The Brain Regions They Are Extracted From: Remembering The Native Countries Of Hypothalamic Expatriates And Refugees, Arshad M. Khan, Alice H. Grant, Anais Martinez, Gully Apc Burns, Brendan S. Thatcher, Vishwanath T. Anekonda, Benjamin W. Thompson, Zachary S. Roberts, Daniel H. Moralejo, James E. Blevins

Arshad M. Khan, Ph.D.

This article, which includes novel unpublished data along with commentary and analysis,
focuses on approaches to link transcriptomic, proteomic, and peptidomic datasets mined from
brain tissue to the original locations within the brain that they are derived from using digital atlas
mapping techniques. We use, as an example, the transcriptomic, proteomic and peptidomic
analyses conducted in the mammalian hypothalamus. Following a brief historical overview, we
highlight studies that have mined biochemical and molecular information from the hypothalamus
and then lay out a strategy for how these data can be linked spatially to the mapped locations in a
canonical brain atlas ...


Contextual Fear Retrieval-Induced Fos Expression Across Early Development In The Rat: An Analysis Using Established Nervous System Nomenclature Ontology, Anthony J. Santarelli, Arshad M. Khan, Andrew M. Poulos 2018 University at Albany, State University of New York

Contextual Fear Retrieval-Induced Fos Expression Across Early Development In The Rat: An Analysis Using Established Nervous System Nomenclature Ontology, Anthony J. Santarelli, Arshad M. Khan, Andrew M. Poulos

Arshad M. Khan, Ph.D.

No abstract provided.


Brightness Perception Involves Local Adaptation Opposed By Lateral Interaction, Qasim Zaidi, Romain Bachy, Jose-Manuel Alonso 2018 Graduate Center for Vision Research, State University of New York

Brightness Perception Involves Local Adaptation Opposed By Lateral Interaction, Qasim Zaidi, Romain Bachy, Jose-Manuel Alonso

MODVIS Workshop

No abstract provided.


Effect Of Noise On Mutually Inhibiting Pyramidal Cells In Visual Cortex: Foundation Of Stochasticity In Bi-Stable Perception, Naoki Kogo, Felix Kern, Thomas Nowotny, Raymond van Ee, Richard van Wezel, Takeshi Aihara 2018 Biophysics, Donders Institute for Brain, Cognition and Behaviour, Radboud University

Effect Of Noise On Mutually Inhibiting Pyramidal Cells In Visual Cortex: Foundation Of Stochasticity In Bi-Stable Perception, Naoki Kogo, Felix Kern, Thomas Nowotny, Raymond Van Ee, Richard Van Wezel, Takeshi Aihara

MODVIS Workshop

Bi-stable perception has been an important tool to investigate how visual input is interpreted and how it reaches consciousness. To explain the mechanisms of this phenomenon, it has been assumed that a mutual inhibition circuit plays a key role. It is possible that this circuit functions to resolve ambiguity of input image by quickly shifting the balance of competing signals in response to conflicting features. Recently we established an in vitro neural recording system combined with computerized connections mediated by model neurons and synapses (“dynamic clamp” system). With this system, mutual inhibition circuit between two pyramidal cells from primary visual ...


Modeling Emmetropization In An Incessantly Moving Eye, Michele Rucci, Jonathan D. Victor 2018 University of Rochester

Modeling Emmetropization In An Incessantly Moving Eye, Michele Rucci, Jonathan D. Victor

MODVIS Workshop

Many questions remain unanswered regarding the specific cues and mechanisms for emmetropization, the process by which, during development, the eye adjusts itself so that distant objects are in focus. Research has so far primarily focused on the spatial cues present in the image on the retina, such as the degree of blur. However, eye movements incessantly transform a mostly static scene into temporal modulations, so that the input to the retina is not an image, but a spatiotemporal flow of luminance. Models of retinal input signals indicate that this space-time reformatting caused by eye movements yields additional cues to the ...


Time-Evolving Dynamics In Brain Networks Forecast Responses To Health Messaging, Nicole Cooper, Javier O. Garcia, Steven Tompson, Matthew B. O'Donnell, Emily B. Falk, Jean M. Vettel 2018 University of Pennsylvania

Time-Evolving Dynamics In Brain Networks Forecast Responses To Health Messaging, Nicole Cooper, Javier O. Garcia, Steven Tompson, Matthew B. O'Donnell, Emily B. Falk, Jean M. Vettel

Departmental Papers (ASC)

Neuroimaging measures have been used to forecast complex behaviors, including how individuals change decisions about their health in response to persuasive communications, but have rarely incorporated metrics of brain network dynamics. How do functional dynamics within and between brain networks relate to the processes of persuasion and behavior change? To address this question, we scanned forty-five adult smokers using functional magnetic resonance imaging while they viewed antismoking images. Participants reported their smoking behavior and intentions to quit smoking before the scan and one month later. We focused on regions within four atlas-defined networks and examined whether they formed consistent network ...


Computer Vision Evidence Supporting Craniometric Alignment Of Rat Brain Atlases To Streamline Expert-Guided, First-Order Migration Of Hypothalamic Spatial Datasets Related To Behavioral Control, Arshad M. Khan, Jose G. Perez, Claire E. Wells, Olac Fuentes 2018 University of Texas at El Paso

Computer Vision Evidence Supporting Craniometric Alignment Of Rat Brain Atlases To Streamline Expert-Guided, First-Order Migration Of Hypothalamic Spatial Datasets Related To Behavioral Control, Arshad M. Khan, Jose G. Perez, Claire E. Wells, Olac Fuentes

Arshad M. Khan, Ph.D.

The rat has arguably the most widely studied brain among all animals, with numerous reference atlases for rat brain having been published since 1946. For example, many neuroscientists have used the atlases of Paxinos and Watson (PW, first published in 1982) or Swanson (S, first published in 1992) as guides to probe or map specific rat brain structures and their connections. Despite nearly three decades of contemporaneous publication, no independent attempt has been made to establish a basic framework that allows data mapped in PWto be placed in register with S, or vice versa. Such data migration would allow ...


Moderate Prenatal Alcohol Exposure Impairs Performance In An Object-Place-Paired-Associate Task, Lilliana May Sanchez 2018 University of New Mexico - Main Campus

Moderate Prenatal Alcohol Exposure Impairs Performance In An Object-Place-Paired-Associate Task, Lilliana May Sanchez

Psychology ETDs

Memory impairments, including spatial and object processing, are often observed in individuals with Fetal Alcohol Spectrum Disorder. Much attention has been directed towards the hippocampus, which displays significant alterations after moderate prenatal alcohol exposure (PAE). In the present study, we tested a moderate PAE rat model in an object-place-paired-associate (OPPA) task, previously shown to require hippocampal processing. The OPPA task was composed of training rats to discriminate between an identical pair of objects presented in 180° opposite arms of a radial arm maze. Animals were given a total of 10 trials per day over 14 consecutive days of training and ...


The Role Of The Chorda Tympani Nerve In The Structural Development Of Brainstem Neurons, Louis Martin 2018 University of Nebraska at Omaha

The Role Of The Chorda Tympani Nerve In The Structural Development Of Brainstem Neurons, Louis Martin

Student Research and Creative Activity Fair

The brain changes substantially throughout development. In the taste system, brainstem neurons undergo dramatic structural alterations after birth. Most notably, these cells’ dendrites, branch-like projections that that receive sensory input, grow 3-4 times longer by adulthood. It is not clear whether incoming signals about taste are necessary for these structural changes to occur. We have consistently found that when the chorda tympani taste nerve (CT) is cut at an early age in rats, it does not regenerate. With this manipulation, we can permanently limit the amount of taste information that reaches the brain. To determine the role of taste input ...


Can A Comprehensive Transition Plan To Barefoot Running Be The Solution To The Injury Epidemic In American Endurance Runners?, Michael A. Scarlett 2018 Claremont McKenna College

Can A Comprehensive Transition Plan To Barefoot Running Be The Solution To The Injury Epidemic In American Endurance Runners?, Michael A. Scarlett

CMC Senior Theses

Fossils belonging to the genus Homo, dating as far back as two million years ago, exhibit uniquely efficient features suggesting that early humans had evolved to become exceptional endurance runners. Although they did not have the cushion or stability-control features provided in our modern day running shoes, our early human ancestors experienced far less of the running-related injuries we experience today. The injury rate has been estimated as high as 90% annually for Americans training for a marathon and as high as 79% annually for all American endurance runners. There is an injury epidemic in conventionally shod populations that does ...


Network Approaches To Understand Individual Differences In Brain Connectivity: Opportunities For Personality Neuroscience, Steven Tompson, Emily B. Falk, Jean M. Vettel, Danielle S. Bassett 2018 University of Pennsylvania

Network Approaches To Understand Individual Differences In Brain Connectivity: Opportunities For Personality Neuroscience, Steven Tompson, Emily B. Falk, Jean M. Vettel, Danielle S. Bassett

Departmental Papers (ASC)

Over the past decade, advances in the interdisciplinary field of network science have provided a framework for understanding the intrinsic structure and function of human brain networks. A particularly fruitful area of this work has focused on patterns of functional connectivity derived from noninvasive neuroimaging techniques such as functional magnetic resonance imaging (fMRI). An important subset of these efforts has bridged the computational approaches of network science with the rich empirical data and biological hypotheses of neuroscience, and this research has begun to identify features of brain networks that explain individual differences in social, emotional, and cognitive functioning. The most ...


Effort-Related Motivational Dysfunctions: Behavioral And Neurochemical Studies Of The Wistar-Kyoto Rat Model Of Depression, Brendan Abbott 2018 University of Massachusetts Amherst

Effort-Related Motivational Dysfunctions: Behavioral And Neurochemical Studies Of The Wistar-Kyoto Rat Model Of Depression, Brendan Abbott

Masters Theses

Depression and related disorders are characterized by motivational dysfunctions, including deficits in behavioral activation and exertion of effort. Animal models of relevance to depression represent a critical starting point in elucidating the neurobiological mechanisms underlying motivational dysfunctions. The present study explored the use of the Wistar-Kyoto (WKY) animal model of depression to examine effort-related functions as measured by voluntary wheel running and performance on a mixed fixed ratio 5/progressive ratio (FR5/PR) operant task. Given the known link between activational aspects of motivation and the mesocorticolimbic dopamine (DA) system, the behavioral effects of d-amphetamine (0.5 and 1.0 ...


Possible Breakdown Of Dopamine Receptor Synergism In A Mouse Model Of Huntington's Disease, Samantha F. Kennedy 2017 University of New Orleans

Possible Breakdown Of Dopamine Receptor Synergism In A Mouse Model Of Huntington's Disease, Samantha F. Kennedy

University of New Orleans Theses and Dissertations

The model of basal ganglia function proposed by Albin, Young and Penney (1989) describes two anatomically independent motor pathways, the direct and indirect. However, under normal conditions striatal dopamine (DA) is required for the expression of motor behavior, and DAergic control of the two pathways (via D1 and D2 receptors, respectively) is dependent on co-activation. We tested for a possible breakdown of D1/D2 synergism using transgenic R6/1 mice bearing the human huntingtin allele (Htt). Motor stereotypy, observed prior to the onset of HD-related symptoms, was rated on a 5-point scale following activation of: A) D1 receptors alone, B ...


Distinct Combinations Of Premotor Neuronal Activation Encode Multimodal Information And Predict Motor Output, Chris Goldsmith 2017 Illinois State University

Distinct Combinations Of Premotor Neuronal Activation Encode Multimodal Information And Predict Motor Output, Chris Goldsmith

Annual Symposium on Biomathematics and Ecology: Education and Research

No abstract provided.


The Role Of Glutamate Neurotransmission In The Ventral Tegmental Area In The Expression Of Conditioned Approach Learning, Priscila Hachimine-Merli 2017 The Graduate Center, City University of New York

The Role Of Glutamate Neurotransmission In The Ventral Tegmental Area In The Expression Of Conditioned Approach Learning, Priscila Hachimine-Merli

All Dissertations, Theses, and Capstone Projects

Conditioned stimuli (CSs) come to function as CSs by acquiring the capacity to activate the same mesocorticolimbic dopamine (DA) neurons activated by primary rewards, producing conditioned activation of these neurons and their associated motivational states. This model stipulates that CSs activate mesocorticolimbic DA systems through the activation of glutamate receptors on DA neurons in the ventral tegmental area (VTA). We tested the hypothesis that glutamate receptor stimulation in the VTA is necessary for the expression of conditioned approach. Rats were tested in a conditioned approach protocol that consisted of 7 consecutive conditioning sessions (light presentations and food were paired), one ...


A Realization Of Modernity: Case Studies In Connectivity And Time, Mari Gorman 2017 The Graduate Center, City University of New York

A Realization Of Modernity: Case Studies In Connectivity And Time, Mari Gorman

All Dissertations, Theses, and Capstone Projects

My stated goal in applying to The Graduate Center was to explore my previous research in diverse fields of study. This research, the result of a formal investigation of acting, was and still is centrally focused on the subject of relationship itself, relationships being what actors create. In pursuit of a greater understanding of the essential nature of relationship in practical terms, a self-organizing complex system that constitutes universal relationship was unexpectedly discovered. As such, this system has been shown to offer solutions to many outstanding problems in diverse areas of study. The Liberal Studies program track, Approaches to Modernity ...


Co-Modulation Masking Release Begins In The Auditory Periphery, Kareem R. Hussein, Agudemu Borjigan, Mark Sayles 2017 Purdue University

Co-Modulation Masking Release Begins In The Auditory Periphery, Kareem R. Hussein, Agudemu Borjigan, Mark Sayles

The Summer Undergraduate Research Fellowship (SURF) Symposium

Understanding speech in noisy environments can be difficult, especially for people with hearing loss. The background noise can cover up the sounds of interest. Normally, the auditory system works to alleviate this problem by tagging and then cancelling the noise. Our experiments are aimed at understanding the mechanism of this noise cancellation process. We hypothesize that non-linear signal processing in the mammalian cochlea (the most peripheral part of the auditory system) is the basis of noise cancellation. To test this hypothesis, we measured the responses of auditory-nerve fibers (ANFs) to sounds embedded in background noise with different statistical properties. ANFs ...


Microarray Analysis Of Aging-Associated Immune System Alterations In The Rostral Ventrolateral Medulla Of F344 Rats, Sivasai Balivada, Chanran K. Ganta, Yongqing Zhang, Hitesh N. Pawar, Richard J. Ortiz, Kevin G. Becker, Arshad M. Khan, Michael J. Kenney 2017 University of Texas at El Paso

Microarray Analysis Of Aging-Associated Immune System Alterations In The Rostral Ventrolateral Medulla Of F344 Rats, Sivasai Balivada, Chanran K. Ganta, Yongqing Zhang, Hitesh N. Pawar, Richard J. Ortiz, Kevin G. Becker, Arshad M. Khan, Michael J. Kenney

Arshad M. Khan, Ph.D.

The rostral ventrolateral medulla (RVLM) is an area of the brain stem that contains diverse neural substrates that are involved in systems critical for physiological function. There is evidence that aging affects some neural substrates within the RVLM, although age-related changes in RVLM molecular mechanisms are not well established. The goal of the present study was to characterize the transcriptomic profile of the aging RVLM and to test the hypothesis that aging is associated with altered gene expression in the RVLM, with an emphasis on immune system associated gene transcripts. RVLM tissue punches from young, middle-aged, and aged F344 rats ...


Central And Peripheral Difference In Perceptual Bias In Ambiguous Perception Using Dichoptic Stimuli --- Implications For The Analysis-By-Synthesis Process In Visual Recognition, Li Zhaoping Prof 2017 University College London

Central And Peripheral Difference In Perceptual Bias In Ambiguous Perception Using Dichoptic Stimuli --- Implications For The Analysis-By-Synthesis Process In Visual Recognition, Li Zhaoping Prof

MODVIS Workshop

No abstract provided.


Similarity-Based Fusion Of Meg And Fmri Discerns Early Feedforward And Feedback Processing In The Ventral Stream, Yalda Mohsenzadeh Dr., Radoslaw Martin Cichy Dr., Aude Oliva Dr., Dimitrios Pantazis Dr. 2017 Massachusetts Institute of Technology

Similarity-Based Fusion Of Meg And Fmri Discerns Early Feedforward And Feedback Processing In The Ventral Stream, Yalda Mohsenzadeh Dr., Radoslaw Martin Cichy Dr., Aude Oliva Dr., Dimitrios Pantazis Dr.

MODVIS Workshop

Successful models of vision, such as DNNs and HMAX, are inspired by the human visual system, relying on a hierarchical cascade of feedforward transformations akin to the ventral stream. Despite these advances, the human visual cortex remains unique in complexity, with feedforward and feedback pathways characterized by rapid spatiotemporal dynamics as visual information is transformed into semantic content. Thus, a systematic characterization of the spatiotemporal and representational space of the ventral visual pathway can offer novel insights in the duration and sequencing of cognitive processes, suggesting computational constraints and new architectures for computer vision models.

To discern the feedforward and ...


Digital Commons powered by bepress