Open Access. Powered by Scholars. Published by Universities.®

Environmental Microbiology and Microbial Ecology Commons

Open Access. Powered by Scholars. Published by Universities.®

803 Full-Text Articles 1541 Authors 155149 Downloads 87 Institutions

All Articles in Environmental Microbiology and Microbial Ecology

Faceted Search

803 full-text articles. Page 1 of 26.

Microbial Ecology Electronic Resources, Michael Bobb 2017 Iowa State University

Microbial Ecology Electronic Resources, Michael Bobb

Michael Bobb

Microbial ecology covers sub-disciplines of both microbiology and ecology. To put it briefly, it is the study of the roles and relationships that microorganisms (predominantly bacteria and fungi) have with the environment and other organisms within the environment. There is much overlap in the topic areas, and often research covers several different sub-disciplines simultaneously. Major topic areas within microbial ecology are ecology, microbiology, soil science, agriculture, bioremediation, environmental science, biogeography, biogeochemistry, oceanography, restoration ecology, and dentistry/biofilm biology. Researchers and research programs cover a broad spectrum of topics; for example, molecular researchers who are interested in the metabolic processes and ...


Spatial Variation In Carbon And Nitrogen In Cultivated Soils In Henan Province, China: Potential Effect On Crop Yield, Xuelin Zhang, Qun Wang, Frank S. Gilliam, Yilun Wang, Feina Cha, Chaohai Li 2017 Marshall University

Spatial Variation In Carbon And Nitrogen In Cultivated Soils In Henan Province, China: Potential Effect On Crop Yield, Xuelin Zhang, Qun Wang, Frank S. Gilliam, Yilun Wang, Feina Cha, Chaohai Li

Qun Wang

Improved management of soil carbon (C) and nitrogen (N) storage in agro-ecosystems represents an important strategy for ensuring food security and sustainable agricultural development in China. Accurate estimates of the distribution of soil C and N stores and their relationship to crop yield are crucial to developing appropriate cropland management policies. The current study examined the spatial variation of soil organic C (SOC), total soil N (TSN), and associated variables in the surface layer (0–40 cm) of soils from intensive agricultural systems in 19 counties within Henan Province, China, and compared these patterns with crop yield. Mean soil C ...


Relating Watershed Characteristics To Elevated Stream Escherichia Coli Levels In Agriculturally Dominated Landscapes: An Iowa Case Study, Conrad Brendel, Michelle L. Soupir 2017 Iowa State University

Relating Watershed Characteristics To Elevated Stream Escherichia Coli Levels In Agriculturally Dominated Landscapes: An Iowa Case Study, Conrad Brendel, Michelle L. Soupir

Michelle L. Soupir

Fecal Indicator Bacteria (FIB) such as Escherichia coli (E. coli) are a leading cause of surface water impairments in the United States. However, the relative impacts of different watershed characteristics on microbial water quality in agriculturally dominated watersheds are unclear. Spatial and statistical analyses were utilized to examine relationships between watershed characteristics and FIB and a multiple regression model was created. Geometric mean E. coli concentration data were obtained for 395 ambient water quality monitoring locations in Iowa. Watersheds were delineated for thirty randomly selected monitoring locations and drainage areas ranged from 93 to 1.1 million hectares. Watershed characteristics ...


The Role Of Dietary Highly Unsaturated N-3 Fatty Acids In Northern Quahogs, Mercenaria Mercenaria, Through Decreasing Temperature, Sixto E. Portilla 2017 The Graduate Center, City University of New York

The Role Of Dietary Highly Unsaturated N-3 Fatty Acids In Northern Quahogs, Mercenaria Mercenaria, Through Decreasing Temperature, Sixto E. Portilla

All Graduate Works by Year: Dissertations, Theses, and Capstone Projects

The series of investigations described in this thesis were designed to assess the effect of diet on mortality through decreasing temperature in two genetic varieties of M. mercenaria important to the natural environment and the aquaculture industry: “wild” from natural stocks and “notata” selected for fast growth. Data from these novel investigations demonstrate a temperature specific sensitivity to each dietary component designating 20:5n-3 as homeoviscously favorable in the upper thermal range above 12°C, and 22:6n-3 as favorable in the lower. Statistical analyses of variance demonstrate distinct cumulative mortalities among the 5 dietary treatments (P < 0.05) for each genetic variety at each thermal range, upper (>12°C) and ...


Ancient Bacteria–Amoeba Relationships And Pathogenic Animal Bacteria, Joan E. Strassmann, Longfei Shu 2017 Washington University in St Louis

Ancient Bacteria–Amoeba Relationships And Pathogenic Animal Bacteria, Joan E. Strassmann, Longfei Shu

Biology Faculty Publications & Presentations

Long before bacteria infected humans, they infected amoebas, which remain a potentially important reservoir for human disease. Diverse soil amoebas including Dictyostelium and Acanthamoeba can host intracellular bacteria. Though the internal environment of free-living amoebas is similar in many ways to that of mammalian macrophages, they differ in a number of important ways, including temperature. A new study in PLOS Biology by Taylor-Mulneix et al. demonstrates that Bordetella bronchiseptica has two different gene suites that are activated depending on whether the bacterium finds itself in a hot mammalian or cool amoeba host environment. This study specifically shows that B. bronchiseptica ...


Burkholderia Cenocepacia J2315-Mediated Destruction Of Staphylococcus Aureus Nrs77 Biofilms., Rachel Thompson 2017 University of Louisville

Burkholderia Cenocepacia J2315-Mediated Destruction Of Staphylococcus Aureus Nrs77 Biofilms., Rachel Thompson

College of Arts & Sciences Senior Honors Theses

Cystic fibrosis (CF) is an inherited disorder that affects over 30,000 people in the US and more than 70,000 people worldwide. Recurring bacterial infections in CF patients result in tissue damage that dramatically lowers respiratory function and are ultimately fatal. The formation of bacterial biofilms in the mucus and on lung epithelial tissue allows pathogens to be protected from antibiotics and the host immune system, making treatment of infection difficult. The interactions between CF pathogens in co-culture biofilms are not well understood and were examined in this study. Staphylococcus aureus and Burkholderia cenocepacia, two common CF pathogens, were ...


Measuring Soil Electrical Conductivity To Delineate Zones Of Variability In Production Fields, Gretchen Sassenrath, S. Kulesza 2017 Kansas State University

Measuring Soil Electrical Conductivity To Delineate Zones Of Variability In Production Fields, Gretchen Sassenrath, S. Kulesza

Kansas Agricultural Experiment Station Research Reports

Production fields in southeast Kansas are highly variable. Differences in elevation and changes in soil texture contribute to unevenness in plant-available moisture and nutrients, resulting in significant inconsistencies in crop production and yield within a field. These variabilities complicate management and impact the return on investments from different areas of the field. Identification of the regions of variability is possible through several methods, including visual inspection, remote imagery, and yield maps. An additional method of assessing soil variability is by measuring the electrical conductivity of the soil. Measuring apparent electrical conductivity gives a map of the spatial distribution of soil ...


Key Components Of Healthy Soils And Their Role In Crop Production, C. J. Hsiao, Gretchen Sassenrath, Charles Rice, L. Zeglin, G. Hettiarachchi 2017 Kansas State University

Key Components Of Healthy Soils And Their Role In Crop Production, C. J. Hsiao, Gretchen Sassenrath, Charles Rice, L. Zeglin, G. Hettiarachchi

Kansas Agricultural Experiment Station Research Reports

Soil health is a confusing term that means different things to different people. To a crop producer, healthy soils are critical for good crop growth and yield. Some soil properties include soil texture, such as the relative percentage of sand, silt and clay; the water content; nutrient levels; organic carbon content; the microbial community; and microbial activity. These properties are determinants of soil health. Our research confirmed that changes in soil management affect the composition and activity of soil microorganisms in surface soils. Greater concentrations of microbial biomass and arbuscular mycorrhizal fungus (AMF) in the no-till agricultural system indicated healthier ...


Impact Of Cations On The Sorption Capabilities Of Kaolin Towards Biofilm-Forming Bacteria, Rachel E. Brineman 2017 Georgia College and State University

Impact Of Cations On The Sorption Capabilities Of Kaolin Towards Biofilm-Forming Bacteria, Rachel E. Brineman

Georgia College Student Research Events

Biofilm-forming bacteria cause problems for industries such as medical, food, and water treatment. Due to its heterogeneous charges, kaolin is capable of sorption of these microorganisms. These charges are impacted by pH and cations, which change the electrostatic interactions between kaolin particles and microorganisms. Proper pH and cation composition may lead to enhanced sorption. The impact of Al3+ cations on kaolin sorption of Gram negative (E. coli and P. aeruginosa) and Gram positive (B. megaterium and S. aureus) was investigated. Calcined kaolin and Diatomaceous Earth kaolin, which were selected in previous studies, were incubated in triplicates with the above organisms ...


In Vitro Studies On Metabolism Of Salvinorin A, Lukasz M. Kutrzeba, Vardan T. Karamyan, Robert C. Speth, John S. Williamson, Jordan K. Zjawiony 2017 University of Mississippi

In Vitro Studies On Metabolism Of Salvinorin A, Lukasz M. Kutrzeba, Vardan T. Karamyan, Robert C. Speth, John S. Williamson, Jordan K. Zjawiony

John S. Williamson

Microbial transformation of natural products is a well established model for mammalian metabolism. Salvinorin A, a diterpenoid isolated from the hallucinogenic mint Salvia divinorum Epling & Játiva-M (Lamiaceae), is a potent non-nitrogenous κ-opioid receptor agonist. The metabolism of salvinorin A has still not yet been well established. Thirty fungal species were screened for the ability to metabolize salvinorin A. We observed that salvinorin A undergoes fast hydrolysis of the acetate group at carbon atom C2, resulting in formation of the pharmacologically inactive product, salvinorin B. Ex vivo experiments were also performed using organelle fractions isolated from rat liver and brain. Crude ...


Investigation Of Bacteria Transport And Resistance Mechanisms And Implications For Water Quality From Confinement Swine And Beef Grazing Production Systems In Iowa, Michelle Soupir, Matt Helmers, Michael L. Thompson, Laura R. Jarboe, Antonio P. Mallarino, Ramesh S. Kanwar 2017 Iowa State University

Investigation Of Bacteria Transport And Resistance Mechanisms And Implications For Water Quality From Confinement Swine And Beef Grazing Production Systems In Iowa, Michelle Soupir, Matt Helmers, Michael L. Thompson, Laura R. Jarboe, Antonio P. Mallarino, Ramesh S. Kanwar

Michelle L. Soupir

This multi-scale, multi-year study was conducted to begin answering questions related to the fate and transport of nutrients and bacteria from land receiving manure application. Experiments were conducted on tile water drainage at an ISU Research Farm in northeast Iowa.


Microflora In The Cheek Pouches Of Ord's Kangaroo Rat (Dipodomys Ordii) From The Nebraska Sandhills, Devin M. Christensen 2017 University of Nebraksa Omaha

Microflora In The Cheek Pouches Of Ord's Kangaroo Rat (Dipodomys Ordii) From The Nebraska Sandhills, Devin M. Christensen

Student Research and Creative Activity Fair

The microflora living within the Ord’s kangaroo rat (Dipodymis ordii) cheek pouches has never been extensively studied before. Kangaroo rats use their cheek pouches to transport seeds and grasses in their mouths that they later store. It is predicted that the cheek pouches harbor fungal and bacterial growth that could be either helpful or harmful to the kangaroo rat and its environment. 8 kangaroo rats were humanely captured using Sherman live traps in the Nebraska Sandhills; their cheek pouches were swabbed, and the microorganisms obtained were grown on agar plates and in liquid media until an adequate amount of ...


Relating Watershed Characteristics To Elevated Stream Escherichia Coli Levels In Agriculturally Dominated Landscapes: An Iowa Case Study, Conrad Brendel, Michelle L. Soupir 2017 Iowa State University

Relating Watershed Characteristics To Elevated Stream Escherichia Coli Levels In Agriculturally Dominated Landscapes: An Iowa Case Study, Conrad Brendel, Michelle L. Soupir

Agricultural and Biosystems Engineering Publications

Fecal Indicator Bacteria (FIB) such as Escherichia coli (E. coli) are a leading cause of surface water impairments in the United States. However, the relative impacts of different watershed characteristics on microbial water quality in agriculturally dominated watersheds are unclear. Spatial and statistical analyses were utilized to examine relationships between watershed characteristics and FIB and a multiple regression model was created. Geometric mean E. coli concentration data were obtained for 395 ambient water quality monitoring locations in Iowa. Watersheds were delineated for thirty randomly selected monitoring locations and drainage areas ranged from 93 to 1.1 million hectares. Watershed characteristics ...


Diversity And Biocide Susceptibility Of Fungal Assemblages Dwelling In The Art Gallery Of Magura Cave, Bulgaria, Milena M. Mitova, Mihail Iliev, Alena Nováková, Anna A. Gorbushina, Veneta I. Groudeva, Pedro M. Martin-Sanchez 2017 Sofia University

Diversity And Biocide Susceptibility Of Fungal Assemblages Dwelling In The Art Gallery Of Magura Cave, Bulgaria, Milena M. Mitova, Mihail Iliev, Alena Nováková, Anna A. Gorbushina, Veneta I. Groudeva, Pedro M. Martin-Sanchez

International Journal of Speleology

Magura Cave, north-western Bulgaria, possesses valuable rock-art paintings made with bat guano and dated from the period between the Eneolithic and Bronze Ages. Since 2008, the Art Gallery is closed to the general public in order to protect the paintings from vandalism, microclimatic changes caused by visitors and artificial illumination, and the consequent growth of fungi and phototrophs. Nevertheless, some tourist visits are allowed under the supervision of cave managers. This study provides the first scientific report on cultivable fungal assemblages dwelling different substrata in the Art Gallery. A total of 78 strains, belonging to 37 OTUs (Ascomycota 81%, Zygomycota ...


Microbial Community And Chemical Characteristics Of Swine Manure During Maturation, Steven L. Trabue, Brian J. Kerr, Bradley L. Bearson, Manhoi Hur, Timothy Parkin, Eve S. Wurtele, Cherrie J. Ziemer 2017 United States Department of Agriculture

Microbial Community And Chemical Characteristics Of Swine Manure During Maturation, Steven L. Trabue, Brian J. Kerr, Bradley L. Bearson, Manhoi Hur, Timothy Parkin, Eve S. Wurtele, Cherrie J. Ziemer

Eve Wurtele

Swine diet formulations have the potential to lower animal emissions, including odor and ammonia (NH3). The purpose of this study was to determine the impact of manure storage duration on manure chemical and microbial properties in swine feeding trials. Three groups of 12 pigs were fed a standard corn–soybean meal diet over a 13-wk period. Urine and feces were collected at each feeding and transferred to 12 manure storage tanks. Manure chemical characteristics and headspace gas concentrations were monitored for NH3, hydrogen sulfide (H2S), volatile fatty acids, phenols, and indoles. Microbial analysis of the stored ...


Microbial Repopulation Following In Situ Star Remediation, Gavin Overbeeke 2017 The University of Western Ontario

Microbial Repopulation Following In Situ Star Remediation, Gavin Overbeeke

Electronic Thesis and Dissertation Repository

In situ STAR (Self-sustaining Treatment for Active Remediation) is an emerging remediation technology which uses smouldering combustion to destroy nonaqueous phase liquid (NAPL) contamination in the subsurface. Since STAR smouldering travels through contaminated soils slowly (~0.5 to 5 m/day) and subjects them to high temperatures (400–1000°C), it is expected that this technology will thoroughly dry and sterilize the zones which it treats. Further, soils surrounding the treatment zone which are not smouldered will be heated, although not smouldered, by virtue of their proximity to STAR, impacting microbial communities within them. Therefore, the objectives of this work ...


Beyond The Obvious: Emerging Contaminants And Biogeochemistry As A Cause And Solution For Nitrogen Pollution, Stephanie L. DeVries 2017 The Graduate Center, City University of New York

Beyond The Obvious: Emerging Contaminants And Biogeochemistry As A Cause And Solution For Nitrogen Pollution, Stephanie L. Devries

All Graduate Works by Year: Dissertations, Theses, and Capstone Projects

Following a comprehensive review of the occurrence and impacts of antibiotics and related pharmaceutical compounds on the terrestrial N-cycle, three experiments were performed to explore the topic of biogeochemistry as a source or a sink for N-pollution. The first of these experiments addresses the question of whether environmentally relevant concentrations of antibiotics (µg·kg-1) have a significant effect on denitrification or N2O production, a question that has not been well addressed in previous studies. Having determined that there is a significant shift, the second study aims to comprehensively follow changes to soil N pools and N2 ...


An Assessment Of Potential False Positive E.Coli Pyroprints In The Cplop Database, Skyler A. Gordon 2017 California Polytechnic State University, San Luis Obispo

An Assessment Of Potential False Positive E.Coli Pyroprints In The Cplop Database, Skyler A. Gordon

Master's Theses and Project Reports

The genetic information found in each species of organism is unique, and can be used as a tool to differentiate at the molecular level. This has caused rapid genotyping methods to become the cornerstone of a new area of research dependent on reading the genome as a form of identification. One of these specific identification methods, known as pyroprinting, relies on the small variation of DNA sequences within the same species to develop a unique, reproducible fingerprint. By simultaneously pyrosequencing multiple polymorphic loci within the ribosomal operons known as the intergenic transcribed spacers, a reproducible output is obtained, known as ...


Freshwater Fungal Infections, Dennis J. Baumgardner 2017 Aurora UW Medical Group, Aurora Health Care

Freshwater Fungal Infections, Dennis J. Baumgardner

Journal of Patient-Centered Research and Reviews

Fungal infections as a result of freshwater exposure or trauma are fortunately rare. Etiologic agents are varied, but commonly include filamentous fungi and Candida. This narrative review describes various sources of potential freshwater fungal exposure and the diseases that may result, including fungal keratitis, acute otitis externa and tinea pedis, as well as rare deep soft tissue or bone infections and pulmonary or central nervous system infections following traumatic freshwater exposure during natural disasters or near-drowning episodes. Fungal etiology should be suspected in appropriate scenarios when bacterial cultures or molecular tests are normal or when the infection worsens or fails ...


What's In A Name? New Bacterial Species And Changes To Taxonomic Status From 2012 Through 2015, Erik Munson, Karen C. Carroll 2017 Marquette University

What's In A Name? New Bacterial Species And Changes To Taxonomic Status From 2012 Through 2015, Erik Munson, Karen C. Carroll

Clinical Lab Sciences Faculty Research and Publications

Technological advancements in fields such as molecular genetics and the human microbiome have resulted in an unprecedented recognition of new bacterial genus/species designations by the International Journal of Systematic and Evolutionary Microbiology. Knowledge of designations involving clinically significant bacterial species would benefit clinical microbiologists in the context of emerging pathogens, performance of accurate organism identification, and antimicrobial susceptibility testing. In anticipation of subsequent taxonomic changes being compiled by the Journal of Clinical Microbiology on a biannual basis, this compendium summarizes novel species and taxonomic revisions specific to bacteria derived from human clinical specimens from the calendar years 2012 through ...


Digital Commons powered by bepress