Evolution Commons^™

Radical Social Ecology As Deep Pragmatism: A Call To The Abolition Of Systemic Dissonance And The Minimization Of Entropic Chaos, Arielle Brender

Student Theses 2015-Present

This paper aims to shed light on the dissonance caused by the superimposition of Dominant Human Systems on Natural Systems. I highlight the synthetic nature of Dominant Human Systems as egoic and linguistic phenomenon manufactured by a mere portion of the human population, which renders them inherently oppressive unto peoples and landscapes whose wisdom were barred from the design process. In pursuing a radical pragmatic approach to mending the simultaneous oppression and destruction of the human being and the earth, I highlight the necessity of minimizing entropic chaos caused by excess energy expenditure, an essential feature of systems that aim …

Understanding Patterns Of Diversity And Evolution In Mainland Anolis Lizards, Levi Gray

Biology ETDs

Patterns of organismal diversity and evolution are often difficult to interpret with a high level of confidence. The number of mechanisms and processes that contribute to shaping patterns of diversity is extensive and is reflected in the many methods researchers have used to infer causation. Taxonomic groups that are well-studied can offer more precise interpretation of pattern and process due to the considerable amount of research addressing ecology, natural history, and behavior of the organisms.

In this dissertation, I explore patterns of phylogenetic and phenotypic variation in Anolis lizards (anoles) by testing hypotheses that could have led to the observed …

Evolution Of Voltage-Gated Ion Channels, Kevin Gregory Bennett, Kevin Bennett

Master of Science in Integrative Biology Theses

Voltage-gated Ion Channels (VICs) form a superfamily of energy-independent membrane transporters that facilitate the transfer of charged sodium, calcium, and potassium ions across the cell membrane (Hodgkin & Huxley 1952). The channels contain a selective ion-conducting pore along with several other structural and gating features that come together to form a functional hetero- or homotetramer. A comprehensive phylogenetic study of all available proteins aimed at finding unknown distribution and illuminating evolutionary paths would be immensely useful in understanding relationships of structure, function, and organismal distribution. This phylogenetic analysis of VICs will be immensely useful in characterizing functional and structural distribution, …

Sources Of Variation In Social Plasticity In Female Mate Preferences And Male Traits, Daniel Neelon

Theses and Dissertations

Female preferences are an important cause of selection on male traits, and exploring the sources of variation in these preferences has been the focus of intense behavioral research. This is due to the fact that understanding this variation is integral to understating the maintenance of variation and complexity in male traits, as well as the evolution and divergence of populations. This project aims to explore the sources of variation in these mating preferences, as well as examine whether similar sources affect components of male traits. This was accomplished using the well-studied mating system of the Green Treefrog, Hyla cinerea that …

Reproductive Effort And Lipid Dynamics Of The Emerald Shiner (Notropis Atherinoides) In The Upper Niagara River, New York, Christopher A. Osborne

Biology Theses

Life history theory predicts that reproductive characteristics of organisms will be shaped by biotic and abiotic factors to maximize their overall fitness. In this study, I investigated how growth, reproductive effort, and lipid dynamics vary ontogenetically and seasonally for emerald shiners (Notropis atherinoides) in the upper Niagara River. Growth rates were highest in age 2 shiners and lower in age 1 and age 3 individuals. Evidence of reproduction was found beginning at age 1, and reproductive investment as measured by ovarian lipid content was lowest in age 1 and age 2 individuals and greatest in age 3 fish. …

Diel Rhythmicity Found In Behavior But Not Biogenic Amine Levels In The Funnel-Web Spider Agelenopsis Pennsylvanica (Araneae, Agelenidae), Alexander E. Demarco

Electronic Theses and Dissertations

Quantifying individual differences in behavior and the extent that behavior is influenced by circadian control is of paramount importance in behavioral ecology. In addition, the proximate mechanisms underlying behavior are also critical in order to obtain a more complete picture of how behavior evolves. Biogenic amines (BAs) are simple nitrogenous compounds derived from amino acids and have been consistently and extensively linked to behavior. For this study, we analyzed temporal patterns of BAs in relation to the antipredator (boldness) and aggressive behavior in female Agelenopsis pennsylvanica, a funnel-web spider. Using HPLC-ED, we compared behavioral responses to temporal patterns of …

Functional Studies Of The E. Coli Proc And A Putative Ortholog Mrub_1345, Maureen Azar, Dr. Lori Scott

Meiothermus ruber Genome Analysis Project

This project is part of the Meiothermus ruber genome analysis project, which uses the bioinformatics tools associated with the Guiding Education through Novel Investigation –Annotation Collaboration Toolkit (GENI-ACT) to predict gene function. We investigated the biological function of Escherichia coli and Meiothermus ruber proC genes using the complementation assay. In this research project, mutants of varying severity to the functional state of the protein were developed. The results showed that two or more amino acid deletions reduced or eliminated ProC function. Amino acid substitutions, on the other hand, were not severe enough to impact ProC function. Double and triple mutants …

A Contribution Toward A Global Monograph Of Gyroporus: Taxonomy, Phylogeny, Biogeography, Naveed Davoodian

Dissertations, Theses, and Capstone Projects

Gyroporus (Sclerodermatineae, Boletales, Agaricomycetes, Basidiomycota, Fungi) is a genus of ectomycorrhizal mushroom-forming fungi distributed throughout the world in suitable habitats. Previous attempts to untangle the diversity of this genus proved difficult due to the presence of semi-cryptic species and equivocal results from phylogenetic analysis of ribosomal RNA markers. To overcome these obstacles, a combined taxonomic and phylogenetic (emphasizing protein-coding genes) approach is used here to delimit species and elucidate geographic and evolutionary patterns of Gyroporus. Careful study of relevant literature and herbarium specimens was augmented by field work in North America, Australia, and East Asia for observation and collection …

Phylogeny And Evolutionary Genomics Of Non-Photosynthetic Diatoms, Anastasiia Onyshchenko

Graduate Theses and Dissertations

Diatoms are prolific photosynthesizers responsible for some 20% of global primary production. In real terms, the oxygen in one of every five breaths traces back to photosynthesis by marine diatoms. Among the tens of thousands of diatom species, a small handful of colorless diatom species in the genus Nitzschia have lost photosynthesis altogether and rely exclusively on extracellular organic carbon for growth. I used DNA sequence data to reconstruct the phylogeny of this group, and found that nonphotosynthetic diatoms are monophyletic, indicating that photosynthesis was lost just one time over the course of some 200 million years of diatom evolution. …

Evolutionary Conservation Of Midline Repulsion By Robo Family Receptors In Flies And Mice, Allison Loy

Biological Sciences Undergraduate Honors Theses

As the nervous system develops in animal embryos, neuronal axons are guided to their synaptic targets by extra cellular cues that signal through axon guidance receptors expressed on the surface of the axon. In animals with bilateral symmetry, one of the important decisions made by nearly every axon in the embryonic nervous system is whether to stay on its own side of the body, or to cross the midline and connect to cells on the opposite side. The Roundabout (Robo) family is an evolutionarily conserved group of axon guidance receptors that regulate midline crossing in a wide range of animal …

Using Molecular Markers To Trace The Population History Of Volant Organisms At Differing Temporal Scales, Noah A. Burg

Dissertations, Theses, and Capstone Projects

Using molecular markers to test phylogenetic and phylogeographic hypotheses is critical for tracking the population origin of invasive, introduced species (Chapter 2, Chapter 4) and to identify the systematic relationships of disparate lineages at both shallow and deep evolutionary time scales (Chapters 3, Chapter 4). In this thesis, Sanger Sequencing was used to generate datasets based on fresh and preserved tissue from specimens collected in the field, as well as museum tissue vouchers granted from various institutions in the US and Europe. In combining these source materials, data were generated for three focal studies: 1) In the first research section …

Niche Shifts, Species Distributions, And Genetic Diversity In Gymnophthalminae Lizards, With A Focus On Microclimates And Thermophysiology, Maria Strangas

Dissertations, Theses, and Capstone Projects

The environmental niche is a central organizing concept in the study of ecology and evolution, as the environmental conditions in which species can persist (their fundamental niches) and the conditions in which they occur (their realized niches) can shape spatial and temporal patterns of biodiversity at multiple scales. How organisms at different levels of biological organization are affected by environmental heterogeneity has consequences for the distribution of genetic and phenotypic diversity, yet the mechanisms through which this occurs are poorly studied. In this dissertation, I present three research chapters that explore how species’ traits and their microclimatic environments shape biodiversity …

Cryptic Diversity In Rhampholeon Boulengeri (Sauria: Chamaeleonidae), A Pygmy Chameleon From The Albertine Rift Biodiversity Hotspot, Daniel F. Hughes, Krystal A. Tolley, Mathias Behangana, Wilber Lukwago, Michele Menegon, J. J. Maximilian Dehling, Jan Stipala, Colin R. Tilbury, Arshad M. Khan, Chifundera Kusamba, Eli Greenbaum

Arshad M. Khan, Ph.D.

No abstract provided.

Scorpions Of The Horn Of Africa (Arachnida, Scorpiones). Part Xvi. Compsobuthus Maidensis Sp. N. (Buthidae) From Somaliland, František Kovařík

Euscorpius

Compsobuthus maidensis sp. n. from Somaliland is described and fully complemented with color photos of specimens, as well as its habitat. Data on the occurrence of the genus Compsobuthus Vachon, 1949 in the Horn of Africa is summarized.

Energetic Tradeoffs Control The Size Distribution Of Aquatic Mammals, William Gearty, Craig R. Mcclain, Jonathan Payne

School of Biological Sciences: Faculty Publications

Four extant lineages of mammals have invaded and diversified in the water: Sirenia, Cetacea, Pinnipedia, and Lutrinae. Most of these aquatic clades are larger bodied, on average, than their closest land-dwelling relatives, but the extent to which potential ecological, biomechanical, and physiological controls contributed to this pattern remains untested quantitatively. Here, we use previously published data on the body masses of 3,859 living and 2,999 fossil mammal species to examine the evolutionary trajectories of body size in aquatic mammals through both comparative phylogenetic analysis and examination of the fossil record. Both methods indicate that the evolution of an aquatic lifestyle …

The Association Of Size Variation In The Dental Arch To Third Molar Agenesis For A Modern Population, Devin N. Williams

USF Tampa Graduate Theses and Dissertations

The frequency with which individuals do not develop their third molars, or wisdom teeth, is increasing worldwide. This current topic of human evolution is relevant to the research of anthropologists, geneticists, dentists, and other researchers involved in the study of human dentition. Many explanations have been offered to account for the prevalence of molar agenesis including, evolutionary, environmental, and genetic theories. The purpose of this research project is to determine the frequency of third molar agenesis and investigate the relationship between third molar agenesis and maxillomandibular jaw dimensions in a sample of orthodontic patients. This research tests the hypotheses that: …

Another Scientific Revolution: Now Yielding A 'Cosmic Biology' Consistent With Natural Theology, Theodore Walker

Perkins Faculty Research and Special Events

Beyond the Copernican revolution, another scientific revolution is now in process. Inspired by Sir Fred Hoyle and others, this contemporary extension of the Copernican revolution is replacing biology conceived as exclusively Earth science with biology conceived as including study of stellar evolution and cosmic evolution. Furthermore, astrobiology, panspermia, and cosmic biology (Hoyle and Wickramasinghe) are advancing in ways consistent with natural theology, especially with panentheism. Some of this was anticipated and advocated by Alfred North Whitehead, Charles Hartshorne, and other philosophers of nature.

Scorpions Of The Horn Of Africa (Arachnida: Scorpiones). Part Xv. Review Of The Genus Gint Kovařík Et Al., 2013, With Description Of Three New Species From Somaliland (Scorpiones, Buthidae), František Kovařík, Graeme Lowe, Pavel Just, Ahmed Ibrahim Awale, Hassan Sh Abdirahman Elmi, František Šťáhlavský

Euscorpius

We describe herein three new species of Buthidae: Gint amoudensis sp. n., G. gubanensis sp. n., and G. maidensis sp. n. from Somaliland. Additional information is provided on the taxonomy and distribution of other species of the genus Gint, fully complemented with color photos of live and preserved specimens, as well as of their habitat. The hemispermatophores of most Gint species are illustrated and described for the first time. In addition to the analyses of external morphology and hemispermatophores, we also describe the karyotype of four Gint species. The number of chromosomes is different for every one …

Hip Extensor Mechanics And The Evolution Of Walking And Climbing Capabilities In Humans, Apes, And Fossil Hominins, Elaine E. Kozma, Nicole M. Webb, William Harcourt-Smith, David A. Raichlen, Kristiaan D’Août, Mary H. Brown, Emma M. Finestone, Stephen R. Ross, Peter Aerts, Herman Pontzer

Publications and Research

The evolutionary emergence of humans’ remarkably economical walking gait remains a focus of research and debate, but experi- mentally validated approaches linking locomotor capability to postcranial anatomy are limited. In this study, we integrated 3D morphometrics of hominoid pelvic shape with experimental mea- surements of hip kinematics and kinetics during walking and climbing, hamstring activity, and passive range of hip extension in humans, apes, and other primates to assess arboreal–terrestrial trade-offs in ischium morphology among living taxa. We show that hamstring-powered hip extension during habitual walking and climbing in living apes and humans is strongly predicted, and likely constrained, by …

The Evolutionary History Of Nebraska Deer Mice: Local Adaptation In The Face Of Strong Gene Flow, Susanne P Pfeifer, Stefan Laurent, Vitor C. Sousa, Catherine R. Linnen, Matthieu Foll, Laurent Excoffier, Hopi E. Hoekstra, Jeffrey D. Jensen

Biology Faculty Publications

The interplay of gene flow, genetic drift, and local selective pressure is a dynamic process that has been well studied from a theoretical perspective over the last century. Wright and Haldane laid the foundation for expectations under an island-continent model, demonstrating that an island-specific beneficial allele may be maintained locally if the selection coefficient is larger than the rate of migration of the ancestral allele from the continent. Subsequent extensions of this model have provided considerably more insight. Yet, connecting theoretical results with empirical data has proven challenging, owing to a lack of information on the relationship between genotype, phenotype, …