Biology Commons^™

Investigation Of Ires-Mediated Translation Of Puma Mrna: Initiation Factor Requirements And Search For Itafs, Amra Ismail

ETD Archive

Translation initiation is the rate-limiting and tightly regulated step of protein synthesis. Cap-dependent translation initiation accounts for about 95% of cellular mRNAs. Around 3-5% of cellular mRNAs have been found to contain a cis-regulatory element (IRES) which can recruit ribosomes in a cap-independent manner. IRESs support protein synthesis under cellular stress conditions when cap-dependent translation is inhibited. Differentiation in 23A2 myoblast cells can be induced by culturing cells in serum-free differentiating media (DM). During 23A2 cellular myoblast differentiation, approximately 30% of cells undergo apoptosis as a result of stress caused by serum withdrawal in order to induce differentiation. The expression …

Differential Sensitivity Of Bees To Urbanization-Driven Changes In Body Temperature And Water Content, Justin D. Burdine, Kevin E. Mccluney

Biological Sciences Faculty Publications

Predicting how species will respond to climate change and land use modification is essential for conserving organisms and maintaining ecosystem services. Thermal tolerances have been shown to have strong predictive power, but the potential importance of desiccation tolerances have been less explored in some species. Here, we report measurements of thermal and desiccation tolerances and safety margins across a gradient of urbanization, for three bee species: silky striped sweat bees (Agapostemon sericeus), western honeybees (Apis mellifera), and common eastern bumblebees (Bombus impatiens). We found significant differences in thermal tolerances, measured as critical thermal maximum …

Which Of The Following Is True: We Can Write Better Multiple Choice Questions, Emily Rauschert, Suann Yang, Rachel M. Pigg

Biological, Geological, and Environmental Faculty Publications

In August of 2018, we held a workshop for ecological educators on best practices for writing multiple-choice questions at the annual Ecological Society of America (ESA) meeting. Here, we summarize the highlights from the pedagogical literature and our own experiences that we shared with workshop participants, along with their insights. The feedback we received at the end of the workshop suggested a need for more pedagogical training opportunities at future conferences.

Frequent Prescribed Fires Can Reduce Risk Of Tick-Borne Diseases, Elizabeth R. Gleim

Environmental Studies / Environmental Science Faculty Scholarship

Recently, a two-year study found that long-term prescribed fire significantly reduced tick abundance at sites with varying burn regimes (burned surrounded by burned areas [BB], burned surrounded by unburned areas [BUB], and unburned surrounded by burned areas [UBB]). In the current study, these ticks were tested for pathogens to more directly investigate the impacts of long-term prescribed burning on human disease risk. A total of 5,103 ticks (4,607 Amblyomma americanum, 76 Amblyomma maculatum, 383 Ixodes scapularis, two Ixodes brunneus, and 35 Dermacentor variabilis) were tested for Borrelia spp., Rickettsia spp., Ehrlichia spp., and Anaplasma phagocytophilum. Long-term prescribed fire did not …

Ideating Idna: Lessons And Limitations From Leeches In Legacy Collections, M. E. Siddall, M. Barkdull, M. Tessler, M. R. Brugler, Elizabeth Borda, E. Hekkala

Biology Faculty Publications

Indirect methods for conducting faunal inventories present great promise, and genomic inventories derived from environmental sources (eDNA) are improving. Invertebrate ingested DNA (iDNA) from terrestrial leeches in the family Haemadipsidae has shown potential for surveying vertebrates and biodiversity monitoring in protected areas. Here we present an initial, and critical, evaluation of the limitations and biases of current iDNA protocols for biodiversity monitoring using both standard and NGS barcoding approaches. Key findings include the need for taxon relevant multi-locus markers and reference databases. In particular, the limitations of available reference databases have profound potential to mislead and bias eDNA and iDNA …

Macroevolutionary Patterning In Glucocorticoids Suggests Different Selective Pressures Shape Baseline And Stress-Induced Levels, Maren N. Vitousek, Michele A. Johnson, C. J. Downs, E. T. Miller, L. B. Martin, C. D. Francis, Jeremy W. Donald, M. J. Fuxjager, W. Goymann, M. Hau, Jerry F. Husak, Bonnie K. Kircher, R. Knapp, L. A. Schoenle, T. D. Williams

Biology Faculty Research

Glucocorticoid (GC) hormones are important phenotypic mediators across vertebrates, but their circulating concentrations can vary markedly. Here we investigate macroevolutionary patterning in GC levels across tetrapods by testing seven specific hypotheses about GC variation and evaluating whether the supported hypotheses reveal consistent patterns in GC evolution. If selection generally favors the “supportive” role of GCs in responding effectively to challenges, then baseline and/or stress-induced GCs may be higher in challenging contexts. Alternatively, if selection generally favors “protection” from GC-induced costs, GCs may be lower in environments where challenges are more common or severe. The predictors of baseline GCs were all …

Ventral Tegmental Area Astrocytes Orchestrate Avoidance And Approach Behavior, J. A. Gomez, J. M. Perkins, Gerard M.J. Beaudoin Iii, N. B. Cook, S. A. Quraishi, E. A. Szoeke, K. Thangamani, C. W. Tschumi, M. J. Wanat, A. M. Maroof, M. J. Beckstead, P. A. Rosenberg, C. A. Paladini

Biology Faculty Research

The ventral tegmental area (VTA) is a heterogeneous midbrain structure, containing neurons and astrocytes, that coordinates behaviors by integrating activity from numerous afferents. Within neuron-astrocyte networks, astrocytes control signals from distinct afferents in a circuit-specific manner, but whether this capacity scales up to drive motivated behavior has been undetermined. Using genetic and optical dissection strategies we report that VTA astrocytes tune glutamatergic signaling selectively on local inhibitory neurons to drive a functional circuit for learned avoidance. In this circuit, astrocytes facilitate excitation of VTA GABA neurons to increase inhibition of dopamine neurons, eliciting real-time and learned avoidance behavior that is …

Dorsal Raphe Dual Serotonin-Glutamate Neurons Drive Reward By Establishing Excitatory Synapses On Vta Mesoaccumbens Dopamine Neurons, H-L. Wang, S. Zhang, J. Qi, H. Wang, R. Cachope, C. A. Mejias-Aponte, J. A. Gomez, G. E. Mateo-Semidey, Gerard M.J. Beaudoin Iii, C. A. Paladini, J. F. Cheer, M. Morales

Biology Faculty Research

Dorsal raphe (DR) serotonin neurons provide a major input to the ventral tegmental area (VTA). Here, we show that DR serotonin transporter (SERT) neurons establish both asymmetric and symmetric synapses on VTA dopamine neurons, but most of these synapses are asymmetric. Moreover, the DR-SERT terminals making asymmetric synapses on VTA dopamine neurons coexpress vesicular glutamate transporter 3 (VGluT3; transporter for accumulation of glutamate for its synaptic release), suggesting the excitatory nature of these synapses. VTA photoactivation of DR-SERT fibers promotes conditioned place preference, elicits excitatory currents on mesoaccumbens dopamine neurons, increases their firing, and evokes dopamine release in nucleus accumbens. …

Preliminary Pcr-Based Screening Indicates A Higher Incidence Of Porcine Endogenous Retrovirus Subtype C (Perv-C) In Feral Versus Domestic Swine, Rashmi Acharya, Zoey K. Wallis, Robert Keener, Eric T. Gillock Ph.D.

Biological Sciences Faculty Publications

Xenotransplantation is considered a potential alternative to allotransplantation to relieve the current shortage of human organs. Due to their similar size and physiology, the organs of pigs are of particular interest for this purpose. Endogenous retroviruses are a result of integration of retroviral genomes into the genome of infected germ cells as DNA proviruses, which are then carried in all cells of the offspring of the organism. Porcine endogenous retroviruses (PERVs) are of special concern because they are found in pig organs and tissues that might otherwise be used for xenotransplantation. PERV proviruses can be induced to replicate and recombine …

Local Adaptation, Genetic Divergence, And Experimental Selection In A Foundation Grass Across The Us Great Plains’ Climate Gradient, Matthew Galliart, Nora Bello, Mary Knapp, Jesse Poland, Paul St Amand, Sara Baer, Brian Maricle Ph.D., Adam B. Smith, Loretta Johnson

Biological Sciences Faculty Publications

Many prior studies have uncovered evidence for local adaptation using reciprocal transplant experiments. However, these studies are rarely conducted for a long enough time to observe succession and competitive dynamics in a community context, limiting inferences for long-lived species. Furthermore, the genetic basis of local adaptation and genetic associations with climate has rarely been identified. Here, we report on a long-term (6-year) experiment conducted under natural conditions focused on Andropogon gerardii, the dominant grass of the North American Great Plains tallgrass ecosystem. We focus on this foundation grass that comprises 80% of tallgrass prairie biomass and is widely used in …

The Cure For Cultivating Fastidious Microbes, Arundhati Bakshi, Austen T. Webber, Lorelei E. Patrick, William Wischusen, Cameron Thrash

Biological Sciences Faculty Publications

Course-Based Undergraduate Research Experiences (CUREs) expand the scientific educational benefits of research to large groups of students in a course setting. As part of an ongoing effort to integrate CUREs into first-year biology labs, we developed a microbiology CURE (mCURE) that uses a modified dilution-toextinction high throughput culturing protocol for isolating abundant yet fastidious aquatic bacterioplankton during one semester. Students learn common molecular biology techniques like nucleic acid extraction, PCR, and molecular characterization; read and evaluate scientific literature; and receive training in scientific communication through written and oral exercises that incorporate social media elements. In the first three semesters, the …

Characterization Of Reproductive Tumors In Caenorhabditis Elegans, Shanti Nicole Gunda Bernstein

Senior Honors Theses and Projects

Tumors are characterized by over-proliferation of cells. However, not all tumors behave the same or have the same effects on surrounding non-tumorous tissues. Using the model organism C. elegans, we established tumor rupture trends in tumorous animals of three different genotypes. The characteristics studied include the effect of a germline tumor on the distribution of intermediate filament proteins in the endotube of the intestine, rate of tumor rupture between the hermaphrodites of each genotype, and tumor nuclear morphology of males and hermaphrodites of two genotypes. We conclude that tumors in C. elegans behave differently among the genotypes studied and the …

Coaggregation Patterns And Surface Characteristics Of Lactobacillus Rhamnosus Gg Under Varying Nutrient Conditions, Amanda Rielinger

Senior Honors Theses and Projects

Lactobacillus rhamnosus GG (LGG) is one of the best studied probiotic organisms. The ability of probiotics to adhere to other microorganisms and the intestinal epithelium is thought to play a major role in their protective functions. Coaggregation is an important mechanism for biofilm formation by microorganisms. The goals of this study were to examine the ways in which nutrient variation affects intercellular interactions between LGG and other gut microbes and the hydrophobic character of LGG. We hypothesized that nutritional variation may affect the ability of LGG to coaggregate and form biofilms and thus affect its probiotic characteristics and ability to …

[Introduction To] Collateral Values: The Natural Capital Created By Landscapes Of War., Todd R. Lookingbill, Peter D. Smallwood

Bookshelf

This book explores the unanticipated benefits that may arise after wars and conflicts, showing how the preservation of battlefields and the establishment of borderlands can create natural capital in the former landscapes of war. The editors call this Collateral Value, in contrast to the collateral damage that war inflicts upon infrastructure, natural capital, and human capital. The book includes case studies recounting successes and failures, opportunities and risks, and ambitious proposals.

The book is organized in two sections. The first visits U.S., English, and French battlefield sites dating from medieval England to World War I. The second explores borderlands located …

Retinoic Acid Inhibition Impairs Planarian Eye Regeneration, Gabrielle Bennetti, Aaron Corbin-Leftwich, Linda M. Boland, Isaac Skromne

Biology Faculty Publications

Retinoic acid is a known morphogen in regulating animal growth and development. Planaria are a key model system for regeneration and their eyes are a morphological marker of anterior differentiation. We explored the requirement for retinoic acid signaling in the regeneration of body parts in the planaria S. mediterranea using an inhibitor of retinoic acid synthesis, diethylaminobenzaldehyde (DEAB). Whole planaria, soaked in DEAB for three days prior to and five days following amputation, produced trunk and tail fragments with defective anterior regeneration. Following regeneration, up to 80% of posterior fragments developed abnormal eyes. The abnormalities included animals without eyes, with …

Multiple Connections Between Amazonia And Atlantic Forest Shaped The T Phylogenetic And Morphological Diversity Of Chiasmocleis Mehely, 1904 (Anura: Microhylidae: Gastrophryninae), Rafael O. De Sá, João Filipe Riva Tonini, Hannah Van Huss, Alex Long, Travis Cuddy, Mauricio C. Forlani, Pedro L.V. Peloso, Hussam Zaher, Célio F.B. Haddad

Biology Faculty Publications

Chiasmocleis is the most species-rich genus of Neotropical microhylids. Herein, we provide the first comprehensive multilocus phylogeny for the genus, including all but 3 of the 34 recognized species and multiple individuals per species. We discuss cryptic speciation, species discovery, patterns of morphological evolution, and provide a historical biogeographic analysis to account for the current distribution of the genus. Diversification of Chiasmocleis from other New World microhylids began during the Eocene, app. 40 mya, in forested areas, and current diversity seems to be a product of recurrent connections between the Atlantic Forest and Amazonia. Small-sized species evolved independently three times …

The Cost Of Breeding In The Winter Versus The Summer In An Opportunistic, Northtemperate Songbird, The Red Crossbill (Loxia Curvirostra), Travis Draud

Master's Theses and Doctoral Dissertations

Energy is the currency of life, where a surplus allows survival and reproduction and a longstanding debt leads to death, yet monitoring energy expenditures in free-living animals has been relatively limited by available technology. Radio transmitters that have been specially modified to detect heart rate, however, allow for real-time estimation of energy expense in free-living, behaving animals. Red crossbills live at northern latitudes year-round and breed opportunistically throughout much of the year. They therefore offer a unique opportunity to examine the ecophysiology of different life cycle stages under drastically variable seasonal conditions. Here we present heart rate data of free-living, …

Understanding Sediment Biogeochemistry And The Role Of Juvenile Oysters On Recently Restored Eastern Oyster Reefs, Bryan Locher

Electronic Theses and Dissertations

In recent decades, goals for the restoration of eastern oyster (Crassostrea virginica) populations along the eastern coast of the United States have shifted from increasing harvestable oyster fisheries to enhancing the range of ecosystem services provided by oyster reefs. By filtering large volumes of water and releasing nutrient-rich feces and pseudofeces, oysters can locally enhance sediment biogeochemical cycling compared to that of unstructured benthic environments. An ongoing restoration program in Mosquito Lagoon, FL was leveraged to assess the immediate impacts ( < 1 year) of restoration on sediment biogeochemical properties of oyster reefs. The first study measured both short-term and long-term pools of carbon, nitrogen and phosphorus on dead, natural and restored reefs periodically over one year. The second study investigated one of the contributions to sediment nutrient pools by comparing feeding and feces/pseudofeces nutrient content of juvenile and older oysters. Results show that inorganic nitrogen and phosphorus pools can change within weeks after restoration and total nutrient pools by 6 months post-restoration. Restored reefs experienced a 136 % increase in ammonium, 78 % increase in total nitrogen, 46 % increase in total phosphorus, and 75 % increase in organic matter concentrations after 12 months of restoration. These nutrient increases were all positively correlated with oyster density, shell length and reef height measured on each reef. When standardized to grams of dry tissue weight, juvenile oysters showed significantly higher rates of chlorophyll-a removal, release of ammonium, and biodeposits with higher concentrations of dissolved organic carbon, nitrite + nitrate, and ammonium. The short-term changes to biogeochemical cycling on eastern oyster reefs within the first year of restoration are important to managers seeking to monitor ecosystem service recovery and overall coastal ecosystem health.

Business In The Estuary, Party In The Sea: Migration Patterns Of Striped Mullet (Mugil Cephalus) Within The Indian River Lagoon Complex, Olivia Myers

Electronic Theses and Dissertations

Commercial and recreational environmental enterprises in the Indian River Lagoon (IRL), Florida supply nearly 10,000 jobs and produce $1.6 billion dollars a year in revenue. These waters contain iconic species of sportfish, including red drum, snook, and sea trout, as well as their lower trophic level prey such as snapper and mullet. Striped mullet (Mugil cephalus) are both commercially valuable as well as an indicator species for overall ecosystem health. From September to December, mullet in the IRL undergo an annual migration from their inshore foraging habitats to oceanic spawning sites. However, their actual migratory pathways remain unknown. To address …

Seascape Genetics And Rehabilitation Efficiency In The Florida Manatee, Madison Hall

Electronic Theses and Dissertations

The Florida manatee (Trichechus manatus latirostris) was recently downlisted federally from "endangered" to "threatened" despite acknowledgments of remaining threats to long term population persistence. Challenges to future manatee conservation include, but are not limited to, increases in frequency of harmful algal blooms, intensifying anthropogenic disturbance, and loss of warm-water habitat. The goals of this dissertation were 1) to assess threats to the manatee via a comprehensive, long-term (1973-2016), retrospective analysis of the manatee rescue and rehabilitation partnership (MRRP) and 2) to use seascape genetics analysis to examine whether abiotic, biotic, or anthropogenic seascape variables could significantly describe genetic distance patterns …