Biology Commons^™

The Importance Of Isolated Wetlands As Habitat For Rare And Endangered Species In Comparison To Riparian Wetlands, Hillary K. Ballantine

Honors Theses

In this paper, I will review the literature on the factors contributing to the presence of rare or endangered species, the species found in each wetland type and what threatens them, and the views on how to and why we should conserve these habitats. I will also provide data analyses on the importance of isolated wetlands as habitats for rare and endangered species in comparison to riparian wetlands, and present my own views on the topic.

Quantification Of Piscine Reovirus (Prv) At Different Stages Of Atlantic Salmon Salmo Salar Production, Torstein Tengs Dr.

Dr. Torstein Tengs

The newly described piscine reovirus (PRV) appears to be associated with the development of heart and skeletal muscle inflammation (HSMI) in farmed Atlantic salmon Salmo salar L. PRV seems to be ubiquitous among fish in Norwegian salmon farms, but high viral loads and tissue distribution support a causal relationship between virus and disease. In order to improve understanding of the distribution of PRV in the salmon production line, we quantified PRV by using real-time PCR on heart samples collected at different points in the life cycle from pre-smolts to fish ready for slaughter. PRV positive pre-smolts were found in about …

Does The Precision Of A Biological Clock Depend Upon Its Period? Effects Of The Duper And Tau Mutations In Syrian Hamsters, Eric L. Bittman

Eric L. Bittman

Mutations which alter the feedback loops that generate circadian rhythms may provide insight into their insensitivity to perturbation robustness) and their consistency of period (precision). I examined relationships between endogenous period, activity and rest (τDD, α and ρ) in Syrian hamsters using two different mutations, duper and tau, both of which speed up the circadian clock. I generated 8 strains of hamsters that are homozygous or heterozygous for the tau, duper, and wild type alleles in all combinations. The endogenous period of activity onsets among these strains ranged from 17.94+0.04 to 24.13±0.04 h. Contrary to predictions, the variability of period …

Of Mice And Mozart: Testing Spatial Reasoning And Memory Of Rats, Kaitlin O'Toole

Honors Theses

An increase in spatial-temporal reasoning has been documented in the presence of Mozart's sonata K.448; this enhancement of physical and psychological activities is called the "Mozart Effect" (Hughes 2001). This effect has been recorded in humans and animals alike, and its influence reaches a myriad of applications including calming wild animals to increasing test scores in college students to lowering high blood pressure. Using a cheeseboard apparatus to test spatial reasoning in rats, this experiment recorded the results from maze tasks completed in the presence of sonata K.448 compared to trials completed in silence. Results showed a significant difference between …

Population Genetics Of The Potato Psyllid, Bactericera Cockerelli, Rebekah I. Chapman

Biology Theses

The potato psyllid (Bactericera cockerelli) is native to North America and occurs from Central America to Canada. A new disease of potatoes, Zebra Chip, has recently been associated with potato psyllid occurrence. Potato psyllids transmit a gram-negative α-proteobacter, Candidatus Liberibacter solanacearum, the putative causal agent of Zebra Chip in potatoes. Symptoms of Zebra Chip first appeared in potato plants grown outside of Saltillo, Mexico in 1994, and by 2000, this invasive disease complex was found in potatoes in south Texas. Since then, Zebra Chip has spread northward, throughout the central plains of the US and on the west coast. Potato …

Devil In A Hula Skirt: Comparative Conservation Efforts Between The United States And Australia Using Two Endemic Species As Case Studies, Sarah Catherine Kuchinsky

Undergraduate Honors Thesis Collection

There is a biodiversity crisis in our midst. An abundance of technology and innovation in the last 200 years has revamped our world but at the cost of pushing many species to extinction. Since the passing of the Endangered Species Act by Congress in 1973, more than 100 species in the United States have disappeared (Wilson 2006). The International Union for the Conservation of Nature (IUCN) stats that "19,265 species out of the 59,507 so far assessed as threatened with extinction," (IUCN 2011). Extinction is the result of a combination of factors caused by human environmental disturbance. Disturbances in the …

Teaching Old Buildings New Tricks: Benefits Of Retrofitting Indianapolis Buildings With Green Roofs, Sarah Elizabeth Strobl

Undergraduate Honors Thesis Collection

Not your basic rooftop garden, green roofs contain growing media and are planted with various types of vegetation. Green roofs can be either intensive, with soil depths above 6 inches and increased size and attractiveness of vegetation, such as trees and shrubs, or extensive, with soil depths between 2-6 inches and low, moss or grass-like plants that require little care (Getter et al. 2009, Indianapolis DPW 2008, Obemdorfer et al. 2007, US DOE 2004).

Although green roofs are initially more expensive than traditional roofing techniques due to the cost of additional materials, the long-term cost savings are high and can …

The Effect Of Photoperiod On Regulation Of Key Components Of The Life Cycle In The Bumble Bee Bombus Impatiens L. (Hymenoptera: Apidae)., Edgar Javier Hernandez

Dissertations

This study investigates how photoperiod affects internal characteristics of colonies of the temperate bumble bee Bombus impatiens particularly; development, reproduction, and social behavior. To answer this question I used an experimental approach using commercially obtained colonies of B. impatiens kept under controlled environmental conditions, and using the exposure to photoperiod as the only variable. Eight different photoperiod treatments were evaluated over the social phase of the colony’s life cycle. Colonies exposed to photoperiods that simulate the species natural temperate photoperiod exhibited larger growth rates, higher, oviposition rates, and higher brood survival than colonies exposed to constant photoperiods. Similarly, colonies exposed …

The Identification Of Arachnid Species In The Cockscomb Basin Wildlife Sanctuary, Lauren Auer

Honors Theses

Despite the known diversity of arachnids in neotropical ecozones there has been little considerable movement towards creating a collective means for identification of arachnids in Belize. Previous studies on ecotourism indicate positive trends between biodiversity education and conservation concern. This study was conducted to engage in a field-based study of arachnids in the Cockscomb Basin Wildlife Sanctuary to determine the most frequently encountered arachnid species. For this study, four separate locations were surveyed within the Sanctuary: three trail sites and the main camp area. Each site was surveyed during two alternate time periods to account for diurnal and nocturnal species. …

Determining The Diversity Of Wetland Fungi Through Molecular-Based Species Identification, Kimberly Chesteen

Honors Theses

This study used molecular techniques to examine the diversity of fungal species inhabiting leaf and stem litter of the freshwater emergent macrophyte, Typha angustifolia, during decomposition. Because morphological identification of fungal species is frequently inaccurate and underestimates the number of fungal species present, molecular techniques involving rRNA genes such as ITS regions (internal transcribed spacer regions) are used to better determine specific fungal species within a sample. In this study, samples of decaying leaf and stems litter of Typha angustifolia were obtained from Independence Lake, Michigan over the span of a year. DNA from litter samples obtained from the months …

Spiders Of Riparian Communities In The Cockscomb Basin Wildlife Sanctuary, Belize, Megan Chevis

Honors Theses

Currently there is little literature on what arachnids inhabit the tropics of Central America, especially within the country of Belize. This study aimed to find which spider species are found in riparian areas within the Cockscomb Basin Wildlife Sanctuary in central Belize and to distinguish trends among spiders and the microhabitats in which they live. Nocturnal samples were predicted to have greater diversity than diurnal samples at all sites. Pisauridae, Salticidae, and Lycosidae were predicted to be the most common spider families collected. Specimens were collected from three riparian sites located on trails within Cockscomb. Diurnal and nocturnal samples were …

The Effects Of An Informal Science Education Setting On Students’ Attitudes Towards Learning Science, Lauren Finley

Honors Theses

Informal science education is becoming increasingly popular in today’s classrooms, and for this reason, it is important to understand the effects of informal science education on students. In this study, the Children’s Attitude Survey (Wulf, Mayhew, & Finkelstein, 2009) was used to measure the effects of informal science education on students’ attitude toward science. Questionnaires were administered to two sample sets, and results indicated a slight decrease in attitude after participating in an informal science field trip. Continuing research in this area will provide more insight into why these effects were seen, and how informal science education can be best …

The Role Of Midline And Pexin10 In Regulating Drosophila Eye Development, John Forstall

Honors Theses

The Drosophila midline (mid) transcription factor gene encodes a highly conserved invertebrate ortholog of the mammalian Tbx20 gene essential for regulating the development of diverse tissues including the central nervous system (CNS), epidermis and heart. Decreasing mid transcript levels within larval eye discs using RNAi (mid- RNAi) results in poorly organized IPCs and in adult eyes, interommatidal bristles derived from sensory organ precursors are significantly reduced in number within the ventral eye field. We also observe gross abnormalities in bristle polarity, ommatidial organization, cellular adhesion and pigmentation in adult mid-RNAi flies. By combining a classical …

Host-Parasite Interactions In Galapagos Seabirds, Iris Ilena Levin

Dissertations

Parasites exhibit a wide range of life history strategies that contribute to different dispersal abilities, host specialization, transmission modes, life-cycle complexity and population structure. Understanding dispersal rates in hosts and parasites is instrumental in defining the scale at which coevolution may be occurring. In order to better understand how and when parasites move between different hosts, I studied a seabird – Hippoboscid fly ectoparasite (and vector) – Haemosporidian parasite system in the Galapagos Islands. I began by describing the Haemosporidian parasites of Galapagos seabirds, discovering a Plasmodium species parasite in Galapagos Penguins (Sphensicus mendiculus), and a new clade of Hippoboscid-vectored …

Plasticity In Photosynthetic Performance And Energy Utilization Efficiency In Triticum Aestivum L., Secale Cereale L. And Brassica Napus L. In Response To Low Temperature And Hig Co2, Keshav Prasad Dahal

Electronic Thesis and Dissertation Repository

I assessed the effects of cold acclimation and long-term elevated CO₂ on photosynthetic performance and energy conversion efficiency of winter (cv Musketeer, cv Norstar) and spring (cv SR4A, cv Katepwa) rye (Secale cereale) and wheat (Triticum aestivum) as well as wild type (WT) and BnCBF17-over-expressing line (BnCBF17-OE) of Brassica napus cv Westar. Plants were grown at either 20/16°C (non-acclimated, NA) or 5/5°C (cold acclimated, CA) and at either ambient (380 µmol C mol^-1) or elevated (700 µmol C mol^-1) CO₂.Compared to NA controls, CA winter cereals, …

Evolution And Biogeography Of Fire-Eye Antbirds (Genus Pyriglena): Insights From Molecules And Songs, Marcos Maldonado Coelho

Dissertations

The importance of climatic and geologic factors as drivers of population differentiation and speciation in the Neotropical region has long been appreciated. However, many questions remain regarding their roles underlying the processes and patterns of diversification. Studies conducted in distinct regions containing a suite of geological and ecological conditions constitute ideal scenarios to assess the role of Pleistocene climatic changes, rivers, and mountain building as historical diversification mechanisms. In chapters 1 and 2, I used an integrative approach combining molecular phylogenetics, phylogeography and population genetics to elucidate the importance of climatic and geological factors as engines of diversification. I focused …

Evolution Of The Bacteriorhodopsin Gene Bop In Haloarchaea, Maulik Jitesh Jani

Honors Scholar Theses

Rhodopsins are among the most studied protein families. They all incorporate a light based chromophore and an opsin. They are found in all three domains of life and can be found in diverse environments, such as the membrane of the haloarchaea, Haloarcula (Haa) marismortui, growing on salt flats in Death Valley, to within human tissues and deep sea water (Briggs and Spudich 2005). Rhodopsins can serve multifarious purposes, from phototaxis away from harmful light to efficient energy generation. Bacteriorhodopsin is the best studied rhodopsin in haloarchaea. The evolutionary pattern of bacteriorhodopsin through its gene, bop, is the main focus of …

Salinity Preference Of Alaskan Threespine Stickleback: Test For Divergence In Halotaxis Between Ancestral And Landlocked Populations, David C. Fryxell

Honors Scholar Theses

Glacial retreat during the Pleistocene caused landlocking of anadromous Alaskan threespine stickleback, Gasterosteus aculeatus, furnishing a natural 'experiment' in osmoregulatory divergence. The objective of this study was to assess the effects of individual acclimation and population divergence on salinity preference. Full-sibling families of marine, anadromous, and freshwater-landlocked populations of stickleback were reared in common environments until 3 weeks post-hatch, then were split and acclimated to low or high salinity. At 6 to 8 weeks of age the six experimental groups were tested for salinity preference in a tank that offers fish a choice of compartments with different salinities arranged in …

Predictors Of 3pq And Quickboard Performance In Power-Oriented Collegiate Athletes, Brendan Putney

Honors Scholar Theses

The measuring of athletic performance via pre participation experiments has been the norm for a long time from high school sports, all the way to professional athletics. These tests help gauge an athlete's physical growth over the offseason, as well as aid in predicting their potential performance in the future. However, performance may diminish as multiple maximum effort assessments are completed due to fatigue. The purpose of this study was to examine targeted assessments for possible novel qualities as performance predictors. Baseline data was taken from a larger performance enhancement study for analysis. Twenty-six men (age: 25+4 yr; height 1.78+0.07m; …

The Role Of Actin Binding Proteins In Cell Motility, Elizabeth Ojukwu

Honors Scholar Theses

Actin binding proteins (ABPs) play key roles in the dynamic organization of the actin cytoskeleton during cell movement. The general localization of ABPs during dynamic cellular processes has been characterized. However, their specific functions and mechanisms of regulating the cytoskeleton during motile cellular processes remain unclear. Two approaches have been utilized to ask how these proteins contribute to cytoskeletal function during motility. Using homologous recombination, mutant cell lines lacking α-actinin, fimbrin or both proteins have been created. By analyzing mutants that lack these proteins, we hope to disrupt processes that require a functional cytoskeleton such as phagocytosis, random motility, development, …