Animal Sciences Commons^™

Go‐Faang Meeting: A Gathering On Functional Annotation Of Animal Genomes, Christopher K. Tuggle, Elisabetta Giuffra, Stephen N. White, Laura Clarke, Huaijun Zhou, Pablo J. Ross, Herve Acloque, James M. Reecy, Alan Archibald, Rebecca R. Bellone, Michele Boichard, Amanda Chamberlain, Hans Cheng, Richard P. M. A. Crooijmans, Mary E. Delany, Carrie J. Finno, Martien A. M. Groenen, Ben Hayes, Joan K. Lunney, Jessica L. Petersen, Graham S. Plastow, Carl J. Schmidt, Jiuzhou Song, Mick Watson

James M Reecy

The Functional Annotation of Animal Genomes (FAANG) Consortium recently held a Gathering On FAANG (GO‐FAANG) Workshop in Washington, DC on October 7–8, 2015. This consortium is a grass‐roots organization formed to advance the annotation of newly assembled genomes of domesticated and non‐model organisms (www.faang.org). The workshop gathered together from around the world a group of 100+ genome scientists, administrators, representatives of funding agencies and commodity groups to discuss the latest advancements of the consortium, new perspectives, next steps and implementation plans. The workshop was streamed live and recorded, and all talks, along with speaker ...

Deriving Gene Networks From Snp Associated With Triacylglycerol And Phospholipid Fatty Acid Fractions From Ribeyes Of Angus Cattle, Justin W. Buchanan, James M. Reecy, Dorian J. Garrick, Qing Duan, Donald C. Beitz, James E. Koltes, Mahdi Saatchi, Lars Koesterke, Raluca G. Mateescu

James M Reecy

The fatty acid profile of beef is a complex trait that can benefit from gene-interaction network analysis to understand relationships among loci that contribute to phenotypic variation. Phenotypic measures of fatty acid profile from triacylglycerol and phospholipid fractions of longissimus muscle, pedigree information, and Illumina 54 k bovine SNP genotypes were utilized to derive an annotated gene network associated with fatty acid composition in 1,833 Angus beef cattle. The Bayes-B statistical model was utilized to perform a genome wide association study to estimate associations between 54 k SNP genotypes and 39 individual fatty acid phenotypes within each fraction. Posterior ...

Genetic Architecture Of Gene Expression Underlying Variation In Host Response To Porcine Reproductive And Respiratory Syndrome Virus Infection, Arun Kommadath, Hua Bao, Igseo Choi, James M. Reecy, James E. Koltes, Elyn Fritz-Waters, Chris J. Eisley, Jason R. Grant, Robert R. R. Rowland, Christopher K. Tuggle, Jack C. M. Dekkers, Joan K. Lunney, Le Luo Guan, Paul Stothard, Graham S. Plastow

James M Reecy

It has been shown that inter-individual variation in host response to porcine reproductive and respiratory syndrome (PRRS) has a heritable component, yet little is known about the underlying genetic architecture of gene expression in response to PRRS virus (PRRSV) infection. Here, we integrated genome-wide genotype, gene expression, viremia level, and weight gain data to identify genetic polymorphisms that are associated with variation in inter-individual gene expression and response to PRRSV infection in pigs. RNA-seq analysis of peripheral blood samples collected just prior to experimental challenge (day 0) and at 4, 7, 11 and 14 days post infection from 44 pigs ...

Design And Validation Of A 90k Snp Genotyping Assay For The Water Buffalo (Bubalus Bubalis), Daniela Iamartino, Ezequiel L. Nicolazzi, Curtis P. Van Tassell, James M. Reecy, Eric R. Fritz-Waters, James E. Koltes, Stefano Biffani, Tad S. Sonstegard, Steven G. Schroeder, Paolo Ajmone-Marsan, Riccardo Negrini, Rolando Pasquariello, Paola Ramell, Angelo Coletta, Jose F. Garcia, Ahmad Ali, Luigi Ramunno, Gianfranco Cosenza, Denise A. A. De Oliveira, Marcela G. Drummond, Eduardo Bastianetto, Alessandro Davassi, Ali Pirani, Fiona Brew, John L. Williams

James M Reecy

Background The availability of the bovine genome sequence and SNP panels has improved various genomic analyses, from exploring genetic diversity to aiding genetic selection. However, few of the SNP on the bovine chips are polymorphic in buffalo, therefore a panel of single nucleotide DNA markers exclusive for buffalo was necessary for molecular genetic analyses and to develop genomic selection approaches for water buffalo. The creation of a 90K SNP panel for river buffalo and testing in a genome wide association study for milk production is described here.

Methods The genomes of 73 buffaloes of 4 different breeds were sequenced and ...

Bioinformatic Analyses In Early Host Response To Porcine Reproductive And Respiratory Syndrome Virus (Prrsv) Reveals Pathway Differences Between Pigs With Alternate Genotypes For A Major Host Response Qtl, Martine Schroyen, Christopher Eisley, James E. Koltes, Eric Fritz-Waters, Igseo Choi, Graham S. Plastow, Leluo Guan, Paul Stothard, Hua Bao, Arun Kommadath, James M. Reecy, Joan K. Lunney, Robert R. R. Rowland, Jack C. M. Dekkers, Christopher K. Tuggle

James M Reecy

Background: A region on Sus scrofa chromosome 4 (SSC4) surrounding single nucleotide polymorphism (SNP) marker WUR10000125 (WUR) has been reported to be strongly associated with both weight gain and serum viremia in pigs after infection with PRRS virus (PRRSV). A proposed causal mutation in the guanylate binding protein 5 gene (GBP5) is predicted to truncate the encoded protein. To investigate transcriptional differences between WUR genotypes in early host response to PRRSV infection, an RNA-seq experiment was performed on globin depleted whole blood RNA collected on 0, 4, 7, 10 and 14 days post-infection (dpi) from eight littermate pairs with one ...

Developmental Progress And Current Status Of The Animal Qtldb, Zhi-Liang Hu, Carissa A. Park, James M. Reecy

James M Reecy

The Animal QTL Database (QTLdb; http://www.animalgenome.org/QTLdb) has undergone dramatic growth in recent years in terms of new data curated, data downloads and new functions and tools. We have focused our development efforts to cope with challenges arising from rapid growth of newly published data and end users’ data demands, and to optimize data retrieval and analysis to facilitate users’ research. Evidenced by the 27 releases in the past 11 years, the growth of the QTLdb has been phenomenal. Here we report our recent progress which is highlighted by addition of one new species, four new data ...

Ecological Factors Influencing Plant Distribution In The Shadscale Zone Of Southeastern Utah, Kamal M. Ibrahim

[STREAMING^TV] DIJON PSG MATCH EN DIRECT LIVE DU MARDI

The intimate relationship between vegetation and soil has long been a subject of interest. Ecologists, soil surveyors, and ranchers have recognized that vegetation differences are often accompanied by variation in soil types.

An Endemic Species In A Protected Area: Euscorpius Carpathicus (L., 1767) In The Cozia National Park, Romania (Scorpiones: Euscorpiidae), Severus-Daniel Covaciu-Marcov, Sára Ferenţi

Euscorpius

In 2016-2018, we identified 48 distribution records of Euscorpius carpathicus in the Cozia National Park, from the Romanian Southern Carpathians. The Carpathian scorpion was found between 300 and 847 m a.s.l., in forested regions, being more numerous in the lower areas situated along the Olt River. E. carpathicus is a native species in the region; it populates natural areas with low human impact.

Employing Natural History Collections In The Aid Of Conservation: Streamlining An Approach To Model Species Distributions En Masse For The Preservation Of Biodiversity, Alice Fornari

Alice Fornari

Using species distribution models (SDMs) in Natural History Collections (NHCs) can influence how humans implement conservation changes in flora and fauna communities and ecosystems. Through the use of legacy data (old NHCs and their associated locality/collection information), data correction (background data or pseudo absences added to presence-only data), and the SDM software, Maxent (and its associated geographic information systems or GIS projected models), it has been shown that it is feasible to create a low budget protocol/setup to project the past, present and future of species population changes. This has been done in the past few decades as ...

Fermentation Of Prebiotics In Whole Food Powders By Probiotic Bacteria Strains, Michaela Brubaker, Sumira Phatak

Research on Capitol Hill

Colorectal cancer (CRC) is the second leading cause of cancer death in the United States. Modification of the gut microbiome offers potential for CRC prevention.

Germ Cell-Depleted Ovaries Improve Metabolic Health In Post-Reproductive Mice, Kyleigh Tyler

Research on Capitol Hill

Reproductive senescence is correlated with many deleterious heath conditions. In human females, the decline of health associated with reproductive function is termed “menopause.“ One of the declining health factors is metabolism.

In order to understand how ovaries contribute to metabolic health, we further studied the structure of ovaries. Within ovaries, there are two main types of cells:

• Germ Cells (oocyte): Play a central role in reproduction (egg)
• Somatic Cells: Supporting cells for germ cells

This study aimed to understand the relationship between germ cells and somatic cells and how this relationship influenced metabolism.

Using Motion-Activated Trail Cameras To Study Diet And Productivity Of Cliff-Nesting Golden Eagles, Jordan T. Harrison, Michael N. Kochert, Benjamin P. Pauli, Julie A. Heath

Julie A. Heath

Studies of cliff-nesting raptors can be challenging because direct observations of nest contents are difficult. Our goals were to develop a protocol for installing motion-activated trail cameras at Golden Eagle (Aquila chrysaetos) nests to record diet information and productivity, and to estimate prey detection probability using different diet study methods. In 2014 and 2015, we installed cameras at 12 Golden Eagle nests with 18–42-d-old nestlings. Following installation, we monitored adult behavior using direct observation and post-installation image review. At two nests, adult eagles did not return to nests or exhibited behaviors suggesting avoidance of the cameras, but returned to ...

Mercury Reduces Avian Reproductive Success And Imposes Selection: An Experimental Study With Adult- Or Lifetime-Exposure In Zebra Finch, Claire W. Varian-Ramos, John P. Swaddle, Daniel A. Cristol

Daniel Cristol

Mercury is a global pollutant that biomagnifies in food webs, placing wildlife at risk of reduced reproductive fitness and survival. Songbirds are the most diverse branch of the avian evolutionary tree; many are suffering persistent and serious population declines and we know that songbirds are frequently exposed to mercury pollution. Our objective was to determine the effects of environmentally relevant doses of mercury on reproductive success of songbirds exposed throughout their lives or only as adults. The two modes of exposure simulated philopatric species versus dispersive species, and are particularly relevant because of the heightened mercury-sensitivity of developing nervous systems ...

Blood Mercury Levels Of Zebra Finches Are Heritable: Implications For The Evolution Of Mercury Resistance, Kenton A. Buck, Claire W. Varian-Ramos, Daniel A. Cristol, John P. Swaddle

Daniel Cristol

Mercury is a ubiquitous metal contaminant that negatively impacts reproduction of wildlife and has many other sub-lethal effects. Songbirds are sensitive bioindicators of mercury toxicity and may suffer population declines as a result of mercury pollution. Current predictions of mercury accumulation and biomagnification often overlook possible genetic variation in mercury uptake and elimination within species and the potential for evolution in affected populations. We conducted a study of dietary mercury exposure in a model songbird species, maintaining a breeding population of zebra finches (Taeniopygia guttata) on standardized diets ranging from 0.0–2.4 μg/g methylmercury. We applied a ...

Reproductive Success Of Eastern Bluebirds (Siala Sialis) On Suburban Golf Courses, Kerri L. Cornell, Caitlin R. Kight, Ryan B. Burdge, Alex R. Gunderson, Joanna K. Hubbard, Allyson K. Jackson, Joshua E. Leclerc, Marie L. Pitts, John P. Swaddle, Daniel A. Cristol

Daniel Cristol

Understanding the role of green space in urban—suburban landscapes is becoming critical for bird conservation because of rampant habitat loss and conversion. Although not natural habitat, golf courses could play a role in bird conservation if they support breeding populations of some native species, yet scientists remain skeptical. In 2003–2009, we measured reproduction of Eastern Bluebirds (Siala sialis) in Virginia on golf courses and surrounding reference habitats, of the type that would have been present had golf courses not been developed on these sites (e.g., recreational parks, cemeteries, agriculture land, and college campus). We monitored >650 nest ...

Using Motion-Activated Trail Cameras To Study Diet And Productivity Of Cliff-Nesting Golden Eagles, Jordan T. Harrison, Michael N. Kochert, Benjamin P. Pauli, Julie A. Heath

Raptor Research Center Publications and Presentations

Studies of cliff-nesting raptors can be challenging because direct observations of nest contents are difficult. Our goals were to develop a protocol for installing motion-activated trail cameras at Golden Eagle (Aquila chrysaetos) nests to record diet information and productivity, and to estimate prey detection probability using different diet study methods. In 2014 and 2015, we installed cameras at 12 Golden Eagle nests with 18–42-d-old nestlings. Following installation, we monitored adult behavior using direct observation and post-installation image review. At two nests, adult eagles did not return to nests or exhibited behaviors suggesting avoidance of the cameras, but returned to ...

A History Of Oysters In Maine (1600s-1970s), Randy Lackovic

Darling Marine Center Historical Documents

This is a history of oyster abundance in Maine, and the subsequent decline of oyster abundance. It is a history of oystering, oyster fisheries, and oyster commerce in Maine. It is a history of the transplanting of oysters to Maine, and experiments with oysters in Maine, and of oyster culture in Maine. This history takes place from the 1600s to the 1970s.

Whole Egg Consumption Impairs Insulin Sensitivity In Rat Model Of Obesity And Type 2 Diabetes, Cassondra J. Saande, Megan A. Steffes, Joseph L. Webb, Rudy J. Valentine, Matthew J. Rowling, Kevin Schalinske

Food Science and Human Nutrition Publications

Background: The literature regarding the relation between egg consumption and type 2 diabetes (T2D) is inconsistent and there is limited evidence pertaining to the impact of egg consumption on measures of insulin sensitivity. Objective: The objective of this study was to investigate the effect of dietary whole egg on metabolic biomarkers of insulin resistance in T2D rats. Downloaded from https://academic.oup.com/cdn/advance-article-abstract/doi/10.1093/cdn/nzz015/5374517 by Iowa State University user on 28 March 2019 Methods: Male Zucker diabetic fatty rats (n=12; 6 wk of age) and their lean controls (n=12; 6 wk ...

Emerging Themes From The Esa Symposium Entitled “Pollinator Nutrition: Lessons From Bees At Individual To Landscape Levels”, Vanessa Corby-Harris, Julia H. Bowsher, Morgan Carr-Markell, Mark J. Carroll, Mary Centrella, Steven C. Cook, Margaret Couvillon, Gloria Degrandi-Hoffman, Adam Dolezal, Julia C. Jones, Christina L. Mogren, Clint R. V. Otto, Pierre Lau, Juliana Rangel, Roger Schürch, Ashley St. Clair

USGS Northern Prairie Wildlife Research Center

Pollinator populations are declining (Biesmeijer et al., 2006; Brodschneider et al., 2018; Cameron et al., 2011; Goulson, Lye, & Darvill, 2008; Kulhanek et al., 2017; National Research Council, 2007; Oldroyd, 2007), and both anecdotal and experimental evidence suggest that limited access to high quality forage might play a role (Carvell, Meek, Pywell, Goulson, & Nowakowski, 2007; Deepa et al., 2017; Goulson, Nicholls, Botias, & Rotheray, 2015; Potts et al., 2003, 2010; Vanbergen & The Insect Pollinators Initiative, 2013; Vaudo, Tooker, Grozinger, & Patch, 2015; Woodard, 2017). Multiple researchers are earnestly addressing this topic in a diverse array of insect-pollinator systems. As research continues to be published, increased communication among scientists studying the topic of nutrition is essential for ...

Stephen Lory Williams (1948-2018), In Memoriam, Suzanne Boyer Mclaren, Catharine A, Hawks, Hugh H. Genoways

Mammalogy Papers: University of Nebraska State Museum

Obituary and biography of Stephen Lory Williams (1948-2018).

Excerpts:

His move in 1990 returned him to Texas Tech University, taking up positions as Collection Manager in the Museum, and Adjunct Professor in the Museum Science Program. His final professional move was made in 1995 to the Department of Museum Studies at the Strecker Museum now known as the Mayborn Museum Complex at Baylor University in Waco, Texas, where he took positions as Assistant Professor and Collections Manager. Steve retired from Baylor in 2007.

Steve was present at the birth of the Society for the Preservation of Natural History Collections, serving ...