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2010

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Full-Text Articles in Physics

Measurement Of Single- And Double-Spin Asymmetries In Deep Inelastic Pion Electroproduction With A Longitudinally Polarized Target, H. Avakian, Gerard P. Gilfoyle, Et. Al. Dec 2010

Measurement Of Single- And Double-Spin Asymmetries In Deep Inelastic Pion Electroproduction With A Longitudinally Polarized Target, H. Avakian, Gerard P. Gilfoyle, Et. Al.

Physics Faculty Publications

We report the first measurement of the transverse momentum dependence of double-spin asymmetries in semi-inclusive production of pions in deep-inelastic scattering off the longitudinally polarized proton. Data have been obtained using a polarized electron beam of 5.7 GeV with the CLAS detector at the Jefferson Lab (JLab). Modulations of single spin asymmetries over the azimuthal angle between lepton scattering and hadron production planes φ have been measured over a wide kinematic range in Bjorken x and virtual photon squared four-momentum Q2. A significant nonzero sin2φ single spin asymmetry was observed for the first time indicating strong spin-orbit …


Upsilon(1s)->Gamma+F2'(1525); F2'(1525)->K0sk0s Decays, Raymond Mountain, Marina Artuso, S. Blusk, T. Skwarnicki Dec 2010

Upsilon(1s)->Gamma+F2'(1525); F2'(1525)->K0sk0s Decays, Raymond Mountain, Marina Artuso, S. Blusk, T. Skwarnicki

Physics - All Scholarship

We report on a study of exclusive radiative decays of the Upsilon(1S) resonance into a final state consisting of a photon and two K0s candidates. We find evidence for a signal for Upsilon(1S)->gamma f_2'(1525); f_2'(1525)->K0sK0s, at a rate (4.0+/-1.3+/-0.6)x10^{-5}, consistent with previous observations of Upsilon(1S)->gamma f_2'(1525); f_2'(1525)->K+K-, and isospin. Combining this branching fraction with existing branching fraction measurements of Upsilon(1S)->gamma f_2'(1525) and J/psi->gamma f_2'(1525), we obtain the ratio of branching fractions: B(Upsilon(1S)->gamma f_2'(1525))/B(J/psi->gamma f_2'(1525))=0.09+/-0.02, approximately consistent with expectations based on soft collinear effective theory.


ϒ(1s)→Γf'2(1525); F'2(1525)->K0sk0s Decays, Raymond Mountain, Marina Artuso, T. Skwarnicki, S. Stone Dec 2010

ϒ(1s)→Γf'2(1525); F'2(1525)->K0sk0s Decays, Raymond Mountain, Marina Artuso, T. Skwarnicki, S. Stone

Physics - All Scholarship

We report on a study of exclusive radiative decays of the Upsilon(1S) resonance into a final state consisting of a photon and two K0s candidates. We find evidence for a signal for Upsilon(1S)->gamma f_2'(1525); f_2'(1525)->K0sK0s, at a rate (4.0+/-1.3+/-0.6)x10^{-5}, consistent with previous observations of Upsilon(1S)->gamma f_2'(1525); f_2'(1525)->K+K-, and isospin. Combining this branching fraction with existing branching fraction measurements of Upsilon(1S)->gamma f_2'(1525) and J/psi->gamma f_2'(1525), we obtain the ratio of branching fractions: B(Upsilon(1S)->gamma f_2'(1525))/B(J/psi->gamma f_2'(1525))=0.09+/-0.02, approximately consistent with expectations based on soft collinear effective theory.


Measurements Of The Electric Form Factor Of The Neutron Up To Q(2)=3.4 Gev2 Using The Reaction (3)(He)Over-Right-Arrowe((E)Over-Right-Arrow, E ' N)Pp, S. Riordan, Timothy Holmstrom Dec 2010

Measurements Of The Electric Form Factor Of The Neutron Up To Q(2)=3.4 Gev2 Using The Reaction (3)(He)Over-Right-Arrowe((E)Over-Right-Arrow, E ' N)Pp, S. Riordan, Timothy Holmstrom

Chemistry & Physics Faculty Publications

The electric form factor of the neutron was determined from studies of the reaction 3He⃗(e⃗,en)pp in quasielastic kinematics in Hall A at Jefferson Lab. Longitudinally polarized electrons were scattered off a polarized target in which the nuclear polarization was oriented perpendicular to the momentum transfer. The scattered electrons were detected in a magnetic spectrometer in coincidence with neutrons that were registered in a large-solid-angle detector. More than doubling the Q2 range over which it is known, we find GEn=0.0236±0.0017(stat)±0.0026(syst), 0.0208±0.0024±0.0019, and 0.0147±0.0020±0.0014 for Q2=1.72, 2.48, and 3.41  GeV2, respectively.


Next-To-Next-To-Leading Soft-Gluon Corrections For The Top Quark Cross Section And Transverse Momentum Distribution, Nikolaos Kidonakis Dec 2010

Next-To-Next-To-Leading Soft-Gluon Corrections For The Top Quark Cross Section And Transverse Momentum Distribution, Nikolaos Kidonakis

Faculty and Research Publications

I present results for top quark production in hadronic collisions at LHC and Tevatron energies. The soft-gluon corrections to the differential cross section are resummed at next-to-next-to-leading-logarithm accuracy via the two-loop soft anomalous dimension matrices. Approximate next-to-next-to-leading-order differential and total cross sections are calculated. Detailed theoretical predictions are shown for the t (t) over bar cross section and the top quark p(T) distribution at the Tevatron and the LHC.


Comparative Study Of Field Enhancement Between Isolated And Coupled Metal Nanoparticles: An Analytical Approach, Greg Sun, Jacob B. Khurgin Dec 2010

Comparative Study Of Field Enhancement Between Isolated And Coupled Metal Nanoparticles: An Analytical Approach, Greg Sun, Jacob B. Khurgin

Physics Faculty Publications

We present an analytical model that takes into account the coupling between the surface plasmon modes in complex metal nanostructures. We apply this model to evaluate the field enhancement in the gap of two coupled Au metal spheres embedded in GaN dielectric and compare the result with that obtained by the single sphere. The results show additional improvement can be obtained in the gap depending on the width of the gap. This approach offers a clear physical insight for the enhancement and a straightforward method for optimization.


D-Dimensional Bose Gases And The Lambert W Function, Sree Ram Valluri, J Tanguay, M Gil, D J. Jeffrey Dec 2010

D-Dimensional Bose Gases And The Lambert W Function, Sree Ram Valluri, J Tanguay, M Gil, D J. Jeffrey

Physics and Astronomy Publications

The applications of the Lambert W function (also known as the W function) to D-dimensional Bose gases are presented. We introduce two sets of families of logarithmic transcendental equations that occur frequently in thermodynamics and statistical mechanics and present their solution in terms of the W function. The low temperature T behavior of free ideal Bose gases is considered in three and four dimensions. It is shown that near condensation in four dimensions, the chemical potential μ and pressure P can be expressed in terms of T through the W function. The low T behavior of one- and two-dimensional ideal …


Does Entropic Gravity Bound The Masses Of The Photon And Graviton?, Jonas R. Mureika, R. B. Mann Dec 2010

Does Entropic Gravity Bound The Masses Of The Photon And Graviton?, Jonas R. Mureika, R. B. Mann

Physics Faculty Works

If the information transfer between test particle and holographic screen in entropic gravity respects both the uncertainty principle and causality, a lower limit on the number of bits in the universe relative to its mass may be derived. Furthermore, these limits indicate particles that putatively travel at the speed of light -- the photon and/or graviton -- have a non-zero mass m≥10−68 kg. This result is found to be in excellent agreement with current experimental mass bounds on the graviton and photon, suggesting that entropic gravity may be the result of a (recent) softly-broken local symmetry. Stronger bounds emerge …


Detecting Electron Motion In Atoms And Molecules, Hua-Chieh Shao, Anthony F. Starace Dec 2010

Detecting Electron Motion In Atoms And Molecules, Hua-Chieh Shao, Anthony F. Starace

Anthony F. Starace Publications

The detection of spatial and temporal electronic motion by scattering of subfemtosecond pulses of 10 keV electrons from coherent superpositions of electronic states of both H and T+2 is investigated. For the H atom, we predict changes in the diffraction images that reflect the time-dependent effective radius of the electronic charge density. For an aligned T+2 molecule, the diffraction image changes reflect the time-dependent localization or delocalization of the electronic charge density.


Unl Physicists Model Potential 4-D Imaging Technique, Tom Simons, Hua-Chieh Shao, Anthony F. Starace Dec 2010

Unl Physicists Model Potential 4-D Imaging Technique, Tom Simons, Hua-Chieh Shao, Anthony F. Starace

Anthony F. Starace Publications

A long-standing goal of science is to be able to understand how matter behaves at the atomic and subatomic level. How electrons rearrange when atoms or molecules come together is the essence of chemistry, and the ability to manipulate those rearrangements is the goal of the emerging sphere of nanotechnology. A fuller understanding could lead to enormous scientific and technological breakthroughs. Unfortunately, significant problems confront scientists and engineers in attacking the question. Not only are atoms and molecules very small, requiring highly specialized equipment to "see" them, everything at the atomic level happens very, very fast. For example, an electron …


Crystalline Order On Catenoidal Capillary Bridges, Mark Bowick, Zhenwei Yao Dec 2010

Crystalline Order On Catenoidal Capillary Bridges, Mark Bowick, Zhenwei Yao

Physics - All Scholarship

We study the defect structure of crystalline particle arrays on negative Gaussian curvature capillary bridges with vanishing mean curvature (catenoids). The threshold aspect ratio for the appearance of isolated disclinations is found and the optimal positions for dislocations determined. We also discuss the transition from isolated disclinations to scars as particle number and aspect ratio are varied.


Crystalline Order On Catenoidal Capillary Bridges, Mark Bowick, Zhenwei Yao Dec 2010

Crystalline Order On Catenoidal Capillary Bridges, Mark Bowick, Zhenwei Yao

Physics - All Scholarship

We study the defect structure of crystalline particle arrays on negative Gaussian curvature capillary bridges with vanishing mean curvature (catenoids). The threshold aspect ratio for the appearance of isolated disclinations is found and the optimal positions for dislocations determined. We also discuss the transition from isolated disclinations to scars as particle number and aspect ratio are varied.


Metastable Anions Of Dinitrobenzene: Resonances For Electron Attachment And Kinetic Energy Release, A. Mauracher, S. Denifl, A. Edtbauer, M. Hager, M. Probst, Olof E. Echt, T. D. Maerk, P. Scheier, T. A. Field, K. Graupner Dec 2010

Metastable Anions Of Dinitrobenzene: Resonances For Electron Attachment And Kinetic Energy Release, A. Mauracher, S. Denifl, A. Edtbauer, M. Hager, M. Probst, Olof E. Echt, T. D. Maerk, P. Scheier, T. A. Field, K. Graupner

Physics & Astronomy

Attachment of free, low-energy electrons to dinitrobenzene (DNB) in the gas phase leads to DNB as well as several fragment anions. DNB, (DNB-H), (DNB-NO), (DNB-2NO), and (DNB-NO(2)) are found to undergo metastable (unimolecular) dissociation. A rich pattern of resonances in the yield of these metastable reactions versus electron energy is observed; some resonances are highly isomer-specific. Most metastable reactions are accompanied by large average kinetic energy releases (KER) that range from 0.5 to 1.32 eV, typical of complex rearrangement reactions, but (1,3-DNB-H)(-) features a resonance with a KER of only 0.06 eV for loss of NO. (1,3-DNB-NO)(-) offers a rare …


Precision Frequency Measurements With Interferometric Weak Values, David J. Starling, P. Ben Dixon, Andrew N. Jordan, John C. Howell Dec 2010

Precision Frequency Measurements With Interferometric Weak Values, David J. Starling, P. Ben Dixon, Andrew N. Jordan, John C. Howell

Mathematics, Physics, and Computer Science Faculty Articles and Research

We demonstrate an experiment which utilizes a Sagnac interferometer to measure a change in optical frequency of 129 ± 7 kHz/√Hz with only 2 mW of continuous-wave, single-mode input power. We describe the measurement of a weak value and show how even higher-frequency sensitivities may be obtained over a bandwidth of several nanometers. This technique has many possible applications, such as precision relative frequency measurements and laser locking without the use of atomic lines.


Movies Of Electrons In Atoms, Michael Schirber, Hua-Chieh Shao, Anthony F. Starace Dec 2010

Movies Of Electrons In Atoms, Michael Schirber, Hua-Chieh Shao, Anthony F. Starace

Anthony F. Starace Publications

Physicists have long been able to snap atomic-scale pictures by shining a beam of electrons at a target, but filming the electronic structure of an atom as it changes in time is the next goal. A rapid "strobing" of electron pulses less than a millionth of a billionth of a second long should do the trick, according to a theoretical analysis in the 24 December Physical Review Letters. The authors demonstrate with computer simulations that ultrafast electron pulses could track the "breathing" state of an excited atom or the hopping of electrons between atoms in a molecule. Such movies open …


Parity Violation In The N + 3he → 3h + P Reaction: Resonance Approach, Vladimir Gudkov Dec 2010

Parity Violation In The N + 3he → 3h + P Reaction: Resonance Approach, Vladimir Gudkov

Faculty Publications

The method based on microscopic theory of nuclear reactions has been applied for the analysis of parityviolatingeffects in few-body systems. Different parity-violating and parity-conserving asymmetries and theirdependence on neutron energy have been estimated for the n + 3He → 3H + p reaction. The estimated effectsare in a good agreement with available exact calculations.


Chaos And Universality In Two-Dimensional Ising Spin Glasses, Alan Middleton, Creighton K. Thomas, David A. Huse Dec 2010

Chaos And Universality In Two-Dimensional Ising Spin Glasses, Alan Middleton, Creighton K. Thomas, David A. Huse

Physics - All Scholarship

Recently extended precise numerical methods and droplet scaling arguments allow for a coherent picture of the glassy states of two-dimensional Ising spin glasses to be assembled. The length scale at which entropy becomes important and produces "chaos", the extreme sensitivity of the state to temperature, is found to depend on the type of randomness. For the $\pm J$ model this length scale dominates the low-temperature specific heat. Although there is a type of universality, some critical exponents do depend on the distribution of disorder.


Conjugated Quantum Dots Inhibit The Amyloid Β (1–42) Fibrillation Process, Garima Thakur, Miodrag Micic, Yuehai Yang, Wenzhi Li, Dania Movia, Silvia Giordani, Hongzhou Zhou, Roger M. Levlanc Dec 2010

Conjugated Quantum Dots Inhibit The Amyloid Β (1–42) Fibrillation Process, Garima Thakur, Miodrag Micic, Yuehai Yang, Wenzhi Li, Dania Movia, Silvia Giordani, Hongzhou Zhou, Roger M. Levlanc

Department of Physics

Nanoparticles have enormous potential in diagnostic and therapeutic studies. We have demonstrated that the amyloid beta mixed with and conjugated to dihydrolipoic acid- (DHLA) capped CdSe/ZnS quantum dots (QDs) of size approximately 2.5 nm can be used to reduce the fibrillation process. Transmission electron microscopy (TEM) and atomic force microscopy (AFM) were used as tools for analysis of fibrillation. There is a significant change in morphology of fibrils when amyloid β (1–42) (Aβ (1–42)) is mixed or conjugated to the QDs. The length and the width of the fibrils vary under modified conditions. Thioflavin T (ThT) fluorescence supports the decrease …


Respecting Tutorial Instructors’ Beliefs And Experiences: A Case Study Of A Physics Teaching Assistant, Renee Michelle Goertzen, Rachel E. Scherr, Andrew Elby Dec 2010

Respecting Tutorial Instructors’ Beliefs And Experiences: A Case Study Of A Physics Teaching Assistant, Renee Michelle Goertzen, Rachel E. Scherr, Andrew Elby

Department of Physics

Effective physics instruction benefits from respecting the physics ideas that introductory students bring into the classroom. We argue that it is similarly beneficial to respect the teaching ideas that novice physics instructors bring to their classrooms. We present a case study of a tutorial teaching assistant TA, Alan. When we first examined Alan’s teaching, we focused our attention on the mismatch between his actions and those advocated by the TA instructors. Further study showed us that Alan cared about helping his students and that his teaching was well integrated with his beliefs about how students learn physics and how teachers …


Pauli Spin Blockade And Lifetime-Enhanced Transport In A Si/Sige Double Quantum Dot, C. B. Simmons, Teck Seng Koh, Nakul Shaji, Madhu Thalakulam, L. J. Klein, Hua Qin, H. Luo, D. E. Savage, M. G. Lagally, A. J. Rimberg Dec 2010

Pauli Spin Blockade And Lifetime-Enhanced Transport In A Si/Sige Double Quantum Dot, C. B. Simmons, Teck Seng Koh, Nakul Shaji, Madhu Thalakulam, L. J. Klein, Hua Qin, H. Luo, D. E. Savage, M. G. Lagally, A. J. Rimberg

Dartmouth Scholarship

We analyze electron-transport data through a Si/SiGe double quantum dot in terms of spin blockade and lifetime-enhanced transport (LET), which is transport through excited states that is enabled by long spin-relaxation times. We present a series of low-bias voltage measurements showing the sudden appearance of a strong tail of current that we argue is an unambiguous signature of LET appearing when the bias voltage becomes greater than the singlet-triplet splitting for the (2,0) electron state. We present eight independent data sets, four in the forward-bias (spin-blockade) regime and four in the reverse-bias (lifetime-enhanced transport) regime and show that all eight …


Do Cosmological Perturbations Have Zero Mean?, Christian Armendariz-Picon Dec 2010

Do Cosmological Perturbations Have Zero Mean?, Christian Armendariz-Picon

Physics - All Scholarship

A central assumption in our analysis of cosmic structure is that cosmological perturbations have zero ensemble mean. This property is one of the consequences of statistically homogeneity, the invariance of correlation functions under spatial translations. In this article we explore whether cosmological perturbations indeed have zero mean, and thus test one aspect of statistical homogeneity. We carry out a classical test of the zero mean hypothesis against a class of alternatives in which perturbations have non-vanishing means, but homogeneous and isotropic covariances. Apart from Gaussianity, our test does not make any additional assumptions about the nature of the perturbations and …


Uncertainty Associated With Modeling The Global Ionosphere, Janelle V. Jenniges, Ariel O. Acebal, Larry Gardner, Robert W. Schunk, Lie Zhu Dec 2010

Uncertainty Associated With Modeling The Global Ionosphere, Janelle V. Jenniges, Ariel O. Acebal, Larry Gardner, Robert W. Schunk, Lie Zhu

Physics Student Research

A study has been conducted of the effect that different physical assumptions have on global models of the electron density distribution. The study was conducted with the Ionosphere Forecast Model (IFM) and the Ionosphere Plasmasphere Model (IPM) developed by Utah State University. Both physics-based, time-dependent, global models use the same empirical models for the neutral atmosphere (MSIS) and neutral wind (Horizontal Wind Model, HWM), but the altitude range, thermal structure, number of ion species, and magnetic 2ield are different. The IFM covers the altitude range from 90-1400 km, calculates the densities for four ions (NO+, O2+, N2+, O+), has a …


Nanoparticle Doped Photopolymer With Reduced Shrinkage For Holographic Recording, Mohesh Moothanchery, Svetlana Mintova, Izabela Naydenova, Vincent Toal Dec 2010

Nanoparticle Doped Photopolymer With Reduced Shrinkage For Holographic Recording, Mohesh Moothanchery, Svetlana Mintova, Izabela Naydenova, Vincent Toal

Conference Papers

We demonstrate holographic recording with Si-MFI zeolite doped acrylamide based photopolymerfilm. The influence of silicate nanoparticles on photopolymer shrinkage has been studied and compared withshrinkage in undoped photopolymer layers The shrinkage of the material (1.03%) is significantly lower forrecording in Si-MFI zeolite nanoparticle doped samples than for undoped layers (1.77%).


Erratum: Scaled Momentum Spectra In Deep Inelastic Scattering At Hera (Journal Of High Energy Physics (2010) 06 (009)), H. Abramowicz, I. Abt, L. Adamczyk, M. Adamus, S. Antonelli, P. Antonioli, A. Antonov, M. Arneodo, V. Aushev, Y. Aushev, O. Bachynska, A. Bamberger, A. N. Barakbaev, G. Barbagli, G. Bari, F. Barreiro, D. Bartsch, M. Basile, O. Behnke, J. Behr, U. Behrens, L. Bellagamba, A. Bertolin, S. Bhadra, M. Bindi, C. Blohm, T. Bołd, E. G. Boos, M. Borodin, K. Borras, D. Boscherini, Margarita C. K. Mattingly Dec 2010

Erratum: Scaled Momentum Spectra In Deep Inelastic Scattering At Hera (Journal Of High Energy Physics (2010) 06 (009)), H. Abramowicz, I. Abt, L. Adamczyk, M. Adamus, S. Antonelli, P. Antonioli, A. Antonov, M. Arneodo, V. Aushev, Y. Aushev, O. Bachynska, A. Bamberger, A. N. Barakbaev, G. Barbagli, G. Bari, F. Barreiro, D. Bartsch, M. Basile, O. Behnke, J. Behr, U. Behrens, L. Bellagamba, A. Bertolin, S. Bhadra, M. Bindi, C. Blohm, T. Bołd, E. G. Boos, M. Borodin, K. Borras, D. Boscherini, Margarita C. K. Mattingly

Faculty Publications

No abstract provided.


Global Dimension Of Ci: Compete Or Collaborate, Arden L. Bement Jr. Dec 2010

Global Dimension Of Ci: Compete Or Collaborate, Arden L. Bement Jr.

PPRI Digital Library

No abstract provided.


Information-Preserving Structures: A General Framework For Quantum Zero-Error Information, Robin Blume-Kohout, Hui Khoon Ng, David Poulin, Lorenza Viola Dec 2010

Information-Preserving Structures: A General Framework For Quantum Zero-Error Information, Robin Blume-Kohout, Hui Khoon Ng, David Poulin, Lorenza Viola

Dartmouth Scholarship

Quantum systems carry information. Quantum theory supports at least two distinct kinds of information (classical and quantum), and a variety of different ways to encode and preserve information in physical systems. A system’s ability to carry information is constrained and defined by the noise in its dynamics. This paper introduces an operational framework, using information-preserving structures, to classify all the kinds of information that can be perfectly (i.e., with zero error) preserved by quantum dynamics. We prove that every perfectly preserved code has the same structure as a matrix algebra, and that preserved information can always be corrected. We …


Projection Of Diffraction Patterns For Use In Cold-Neutral-Atom Trapping, Katharina Gillen-Christandl, Glen D. Gillen Dec 2010

Projection Of Diffraction Patterns For Use In Cold-Neutral-Atom Trapping, Katharina Gillen-Christandl, Glen D. Gillen

Physics

Scalar diffraction theory is combined with beam-propagation techniques to investigate the projection of near-field diffraction patterns to spatial locations away from the aperture for use in optically trapping cold neutral alkali-metal atoms. Calculations show that intensity distributions with localized bright and dark spots usually found within a millimeter of the diffracting aperture can be projected to a region free from optical components such as a cloud of cold atoms within a vacuum chamber. Calculations also predict that the critical properties of the optical dipole atom traps are not only maintained for the projected intensity patterns but also can be manipulated …


Source Attribution Of Ozone In Southeast Texas Before And After The Deepwater Horizon Accident Using Satellite, Sonde, Surface Monitor, And Air Mass Trajectory Data, Gary A. Morris, Barry Lefer, Bernhard Rappenglueck, Christine Haman, Marc Taylor, Mark R. Schoeberl Dec 2010

Source Attribution Of Ozone In Southeast Texas Before And After The Deepwater Horizon Accident Using Satellite, Sonde, Surface Monitor, And Air Mass Trajectory Data, Gary A. Morris, Barry Lefer, Bernhard Rappenglueck, Christine Haman, Marc Taylor, Mark R. Schoeberl

Physics and Astronomy Faculty Presentations

Since the summer of 2004, over 300 ozonesondes have been launched from Rice University (29.7 N, 95.4 W) or the University of Houston (29.7 N, 95.3 W), each < 5 km from downtown Houston. The Texas Commission on Environmental Quality maintains a large database of hourly surface ozone observations in Southeast Texas. In this study, we identify the contributions to surface ozone pollution levels from natural and anthropogenic sources, both local and remote in nature. This source identification is performed two ways: 1) through an analysis of sonde data, including ozone concentrations, wind speed and direction, and relative humidity data, and 2) through an analysis that combines trajectory calculations with surface monitor data. We also examine regional changes in Ozone Monitoring Instrument (OMI) measurements of formaldehyde and ozone from 2004 – 2010. In particular, we compare the 2010 sonde, surface monitor, and satellite data after the Deepwater Horizon accident with data from previous years to determine the impact, if any, of the large source of hydrocarbons in the Gulf of Mexico on air quality in Southeast Texas.


In Silico Modeling Of Ph-Optimum Of Protein-Protein Binding, Rooplekha C. Mitra, Zhe Zhang, Emil Alexov Dec 2010

In Silico Modeling Of Ph-Optimum Of Protein-Protein Binding, Rooplekha C. Mitra, Zhe Zhang, Emil Alexov

Publications

Protein-protein association is a pH-dependent process and thus the binding affinity depends on the local pH. In vivo the association occurs in a particular cellular compartment, where the individual monomers are supposed to meet and form a complex. Since the monomers and the complex exist in the same micro environment, it is plausible that they coevolved toward its properties, in particular, toward the characteristic subcellular pH. Here we show that the pH at which the monomers are most stable (pH-optimum) or the pH at which stability is almost pH-independent (pH-flat) of monomers are correlated with the pH-optimum of maximal affinity …


Momentum-Space Engineering Of Gaseous Bose-Einstein Condensates, Mark Edwards, Brandon Benton, Jeffrey Heward, Charles W. Clark Dec 2010

Momentum-Space Engineering Of Gaseous Bose-Einstein Condensates, Mark Edwards, Brandon Benton, Jeffrey Heward, Charles W. Clark

Department of Physics and Astronomy Faculty Publications

We show how the momentum distribution of gaseous Bose-Einstein condensates can be shaped by applying a sequence of standing-wave laser pulses. We present a theory, whose validity was demonstrated in an earlier experiment [L. Denget al., Phys. Rev. Lett. 83, 5407 (1999)], of the effect of a two-pulse sequence on the condensate wavefunction in momentum space. We generalize the previous result to the case of N pulses of arbitrary intensity separated by arbitrary intervals and show how these parameters can be engineered to produce a desired final momentum distribution. We find that several momentum distributions, important in …