# Physics Commons™

Articles 1 - 6 of 6

## Full-Text Articles in Physics

Statistical Biophysics Blog: What I Have Against (Most) Pmf Calculations, Daniel M. Zuckerman May 2017

#### Statistical Biophysics Blog: What I Have Against (Most) Pmf Calculations, Daniel M. Zuckerman

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The potential of mean force (PMF) is one of the most widely used characterizations of a biomolecular system computed from simulation, but calculating and interpreting a PMF both present challenges.

Overview Of Weighted Ensemble Simulation: Path-Sampling, Steady States, Equilibrium, Daniel M. Zuckerman May 2017

#### Overview Of Weighted Ensemble Simulation: Path-Sampling, Steady States, Equilibrium, Daniel M. Zuckerman

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A concise overview of the weighted ensemble path sampling method for rare events is given, aimed at beginners.

Statistical Biophysics Blog: So You Want To Learn Biology? Required Reading, Part 1, Daniel M. Zuckerman Jun 2016

#### Statistical Biophysics Blog: So You Want To Learn Biology? Required Reading, Part 1, Daniel M. Zuckerman

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Franklin Harold's The Way of the Cell provides a particularly readable and useful introduction to cell biology for physical scientists and other quantiative folks.

Statistical Biophysics Blog: Faq On Trajectory Ensembles, Daniel M. Zuckerman Nov 2015

#### Statistical Biophysics Blog: Faq On Trajectory Ensembles, Daniel M. Zuckerman

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The basics of trajectories and the different types of trajectory ensembles are explained.

Statistical Biophysics Blog: Everything Is Markovian; Nothing Is Markovian, Daniel M. Zuckerman Jul 2015

#### Statistical Biophysics Blog: Everything Is Markovian; Nothing Is Markovian, Daniel M. Zuckerman

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Most behavior, observed via a subset of coordinates or discretized states, should not be Markovian even though the underlying dynamics generally will be.

Statistical Biophysics Blog: A Hello: The Point Of This Blog, Daniel M. Zuckerman Apr 2015

#### Statistical Biophysics Blog: A Hello: The Point Of This Blog, Daniel M. Zuckerman

##### Scholar Archive

No abstract provided.