Open Access. Powered by Scholars. Published by Universities.®

Physics Commons

Open Access. Powered by Scholars. Published by Universities.®

Articles 1 - 6 of 6

Full-Text Articles in Physics

Statistical Biophysics Blog: What I Have Against (Most) Pmf Calculations, Daniel M. Zuckerman May 2017

Statistical Biophysics Blog: What I Have Against (Most) Pmf Calculations, Daniel M. Zuckerman

Scholar Archive

The potential of mean force (PMF) is one of the most widely used characterizations of a biomolecular system computed from simulation, but calculating and interpreting a PMF both present challenges.


Overview Of Weighted Ensemble Simulation: Path-Sampling, Steady States, Equilibrium, Daniel M. Zuckerman May 2017

Overview Of Weighted Ensemble Simulation: Path-Sampling, Steady States, Equilibrium, Daniel M. Zuckerman

Scholar Archive

A concise overview of the weighted ensemble path sampling method for rare events is given, aimed at beginners.


Statistical Biophysics Blog: So You Want To Learn Biology? Required Reading, Part 1, Daniel M. Zuckerman Jun 2016

Statistical Biophysics Blog: So You Want To Learn Biology? Required Reading, Part 1, Daniel M. Zuckerman

Scholar Archive

Franklin Harold's The Way of the Cell provides a particularly readable and useful introduction to cell biology for physical scientists and other quantiative folks.


Statistical Biophysics Blog: Faq On Trajectory Ensembles, Daniel M. Zuckerman Nov 2015

Statistical Biophysics Blog: Faq On Trajectory Ensembles, Daniel M. Zuckerman

Scholar Archive

The basics of trajectories and the different types of trajectory ensembles are explained.


Statistical Biophysics Blog: Everything Is Markovian; Nothing Is Markovian, Daniel M. Zuckerman Jul 2015

Statistical Biophysics Blog: Everything Is Markovian; Nothing Is Markovian, Daniel M. Zuckerman

Scholar Archive

Most behavior, observed via a subset of coordinates or discretized states, should not be Markovian even though the underlying dynamics generally will be.


Statistical Biophysics Blog: A Hello: The Point Of This Blog, Daniel M. Zuckerman Apr 2015

Statistical Biophysics Blog: A Hello: The Point Of This Blog, Daniel M. Zuckerman

Scholar Archive

No abstract provided.