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Articles 1 - 30 of 46
Full-Text Articles in Physical Chemistry
Applying Density Functional Theory Simulations To Study The Charge Balancing And Structure Directing Roles Of Fluoride In Zeolite Synthesis, Tongkun Wang
Doctoral Dissertations
Zeolites represent a major cornerstone of today’s energy industry as the most-used petrochemical catalyst by weight in the world. Constituted by tetrahedra of T-atoms including Si, Al, Ge and Ti, zeolites form a huge family of nano-porous crystalline materials which also provide reliable candidates for novel, energy related applications such as efficient separations, hydrogen-purifying/storing and conversions from biomass to biofuel. However, the formation mechanism of zeolite is still not clear, as synthesis processes are complicated by requirements including structure directing agents (SDAs), hydroxide or fluoride medium, and experimental conditions like temperature. Attempts for designing new zeolite structures still fall in …
Atomistic Simulations Of Intrinsically Disordered Protein Folding And Dynamics, Xiping Gong
Atomistic Simulations Of Intrinsically Disordered Protein Folding And Dynamics, Xiping Gong
Doctoral Dissertations
Intrinsically disordered proteins (IDPs) are crucial in biology and human diseases, necessitating a comprehensive understanding of their structure, dynamics, and interactions. Atomistic simulations have emerged as a key tool for unraveling the molecular intricacies and establishing mechanistic insights into how these proteins facilitate diverse biological functions. However, achieving accurate simulations requires both an appropriate protein force field capable of describing the energy landscape of functionally relevant IDP conformations and sufficient conformational sampling to capture the free energy landscape of IDP dynamics. These factors are fundamental in comprehending potential IDP structures, dynamics, and interactions. I first conducted explicit solvent simulations to …
Determining Bond Strengths And Dissociation Dynamics Of Diatomic Metal-Containing Ions By Photofragment Imaging, Schuyler P. Lockwood
Determining Bond Strengths And Dissociation Dynamics Of Diatomic Metal-Containing Ions By Photofragment Imaging, Schuyler P. Lockwood
Doctoral Dissertations
Studies of simple metal ion – ligand complexes have primarily focused on understanding their roles in activating C-H and C-C bonds. However, data are often lacking on the fundamental properties of these species, which can have unusual bond orders and cluttered electronic structures with many states of multi-reference character, complicating their treatment in theoretical studies. Experimental work determining high-precision bond energies, ground state identities and excited state dynamics of a wider variety of metal-containing ions is needed to establish a robust set of well-characterized benchmark molecules. This work describes studies of the energetics and dynamics of several MX+ species, …
Scanning Probe And Spectroscopic Investigations Of Polarization-Driven Electronic Interactions At The Inorganic/Organic Interface Of 2d Materials, Nicholas Hight-Huf
Scanning Probe And Spectroscopic Investigations Of Polarization-Driven Electronic Interactions At The Inorganic/Organic Interface Of 2d Materials, Nicholas Hight-Huf
Doctoral Dissertations
My thesis focuses on understanding the changes in electronic properties of two-dimensional materials produced by surface interactions not limited to charge exchange. Recent work from our group demonstrated that both small molecules and polymers can function as effective charge dopants for monolayered 2D materials such as MoS2 and graphene, changing the Fermi energy by either donating or accepting electron density to/from the 2D material. Additionally, the underlying support material was found to play a significant role, where higher dielectric constant supports result in larger magnitude of Fermi energy shift of the 2D material because less of the dopant interaction …
Frontiers In The Self-Assembly Of Charged Macromolecules, Khatcher O. Margossian
Frontiers In The Self-Assembly Of Charged Macromolecules, Khatcher O. Margossian
Doctoral Dissertations
The self-assembly of charged macromolecules forms the basis of all life on earth. From the synthesis and replication of nucleic acids, to the association of DNA to chromatin, to the targeting of RNA to various cellular compartments, to the astonishingly consistent folding of proteins, all life depends on the physics of the organization and dynamics of charged polymers. In this dissertation, I address several of the newest challenges in the assembly of these types of materials. First, I describe the exciting new physics of the complexation between polyzwitterions and polyelectrolytes. These materials open new questions and possibilities within the context …
Molecular Vibrations And Shape-Selectivity: A Computational Model Of Biofuel Precursors In Zeolites, Babgen Manookian
Molecular Vibrations And Shape-Selectivity: A Computational Model Of Biofuel Precursors In Zeolites, Babgen Manookian
Doctoral Dissertations
We have used Density Functional Theory (DFT) to model acyclic and cyclic olefins in acidic zeolites. We have studied the impact of host-guest interactions between adsorbed molecules and zeolite frameworks through the lens of molecular vibrations and shape-selectivity. This work considered three zeolite frameworks with varying pore structures and environments: large pore zeolite HMOR and medium pore zeolites HZSM-5 and HZSM-22. A key finding is that for acyclic olefins in acidic zeolites there exists two regimes of host-guest interaction: a strong interaction leading to protonation and a weak interaction between charged guest and zeolite framework. We found that these interactions …
Manipulating The Aliovalent Magnetic Dopants In Ti(Iv)-Based Oxide Nanocrystals, Muhammad Abdullah
Manipulating The Aliovalent Magnetic Dopants In Ti(Iv)-Based Oxide Nanocrystals, Muhammad Abdullah
Doctoral Dissertations
The intentional incorporation of impurities or dopants in semiconductors is fundamental to manipulate the properties that render them useful for spintronics, photocatalysis, and optoelectronics. One long-standing challenge in integrating the doped semiconductors in various applications is the design of materials with controlled individual dopant properties such as dopants speciation, valence state, and spin dynamics. Despite several elegant studies to circumvent these material challenges, the quest for new materials with tunable dopant properties to address the theoretical and experimental understanding continues. In this work, we combine synthetic chemistry and various spectroscopies to study a class of materials possessing both substitutional magnetic …
Theory And Improved Methods For Probing The Cavitation To Fracture Transition, Christopher Barney
Theory And Improved Methods For Probing The Cavitation To Fracture Transition, Christopher Barney
Doctoral Dissertations
A material is considered soft when its bulk modulus is significantly greater than its shear modulus. Rubbery polymers are a class of soft materials where resistance to extension is mainly entropic in nature. Polymeric soft solids differ from liquids due to the presence of a percolated network of strong bonds that resist deformation and flow on a given time scale. The incompressible nature, entropically driven elasticity, and molecular scale network structure of soft polymeric solids combine to impart unique mechanical behavior that often results in complex material responses to simple loading situations. An important example of this is cavitation in …
Fluorescence Spectroscopy And Microscopy Studies Of Chromophore Coupling In Isolated Small Molecule Nanostructures, Sarah R. Marques
Fluorescence Spectroscopy And Microscopy Studies Of Chromophore Coupling In Isolated Small Molecule Nanostructures, Sarah R. Marques
Doctoral Dissertations
My thesis focused on understanding the structural changes producing different spectral signatures seen in aggregates of 7,8,15,16- tetrazaterrylene (TAT). Recent work from our group showed crystallographically selective directional charge-separation within isolated extended TAT crystals without the need of an interface. Aggregates of different size not only exhibited different exciton recombination kinetics, but different spectral signatures. The motivation for understanding the change in the structural properties producing the unique spectral signatures is elucidating the mechanism of this directional charge-separation, intrinsic or extrinsic. In this case, an intrinsic mechanism means it is caused by molecular design and packing, and extrinsic mechanism means …
Top-Down And Bottom-Up Fabrication Of Key Components In Miniature Energy Storage Devices, Wenhao Li
Top-Down And Bottom-Up Fabrication Of Key Components In Miniature Energy Storage Devices, Wenhao Li
Doctoral Dissertations
The advent of miniature electronic devices demands power sources of commensurate form factors. This spurs the research of micro energy storage devices, e.g., 3D microbatteries. A 3D microbattery contains nonplanar microelectrodes with high aspect ratio and high surface area, separated by a nanoscale electrolyte. The device takes up a total volume as small as 10 mm3, allowing it to serve on a chip and to provide power in-situ. The marriage of nanotechnology and electrochemical energy storage makes microbattery research a fascinating field with both scientific excitement and application prospect. However, successful fabrication of well-functioned key components …
Providing Molecular Insight For Understanding Anion Exchange Membrane Conductivity, Michael Kwasny
Providing Molecular Insight For Understanding Anion Exchange Membrane Conductivity, Michael Kwasny
Doctoral Dissertations
Anion exchange membranes (AEMs) are notorious for having both low alkaline stability and poor ion conductivity in fuel cell operation conditions, with solutions to these two challenges often being developed independent of each other. The chemical instability of an AEM is viewed through degradation of the polymer backbone and the cationic species and improving a material’s stability is approached by altering the polymer backbone, the cation, or both. On the other hand, poor ion conductivity is typically addressed by modifying bulk membrane properties such as increasing the ion exchange capacity (IEC), changing the morphology, or increasing the water uptake. These …
Modulating Dopant-Defect Interactions In Transition Metal Doped Colloidal Strontium Titanate Nanocrystals, William Harrigan
Modulating Dopant-Defect Interactions In Transition Metal Doped Colloidal Strontium Titanate Nanocrystals, William Harrigan
Doctoral Dissertations
Perovskites such as strontium titanate, a wide band gap semiconductor have been widely studied due to the multitude of potential applications in photocatalysis, multiferroics, sensing, and microelectronics. Various novel optical, electrical and magnetic properties can be imparted through the introduction of different transition metal dopant ions. The introduction of these impurities has been shown to impart functionality for various applications. The use of Cr3+has been shown to introduce defect levels into the band structure of SrTiO3and increase visible light utilization for photocatalysis. Transition metal doped highly crystalline colloidal SrTiO3nanocrystals (NC) were synthesized using two …
Simulating Hydrogen Bonded Clusters And Zeolite Clusters For Renewable Energy Applications, Qinfang Sun
Simulating Hydrogen Bonded Clusters And Zeolite Clusters For Renewable Energy Applications, Qinfang Sun
Doctoral Dissertations
Our research attention is focused on the development of new fuel cell membrane materials and new zeolites which improve biomass conversion rate to meet the increasing demand of renewable and sustainable energy. We have simulated the dynamics of amphiprotic groups (pyrazole, imidazole, 1,2,3-triazole, 1,2,4-triazole, and tetrazole, acetic acid, formic acid, sulfuric acid, and phosphoric acid) as neat liquids and tethered via linkers to aliphatic backbones, to determine how tethering and varying functional groups affect hydrogen bond networks and reorientation dynamics, both factors thought to influence proton conduction. We used the DL_Poly_2 molecular dynamics code with the GAFF force field to …
Multiscale Simulations Of Intrinsically Disordered Proteins, Xiaorong Liu
Multiscale Simulations Of Intrinsically Disordered Proteins, Xiaorong Liu
Doctoral Dissertations
Intrinsically disordered proteins (IDPs) lack stable secondary and/or tertiary structures under physiological conditions. The have now been recognized to play important roles in numerous biological processes, particularly cellular signaling and regulation. Mutation of IDPs are frequently associated with human diseases, such as cancers and neuron degenerative diseases. Therefore, it is important to understand the structure, dynamics, and interactions of IDPs, so as to establish the mechanistic basis of how intrinsic disorder mediates versatile functions and how such mechanisms may fail in human diseases. However, the heterogeneous structural ensembles of IDPs are not amenable to high resolution characterization solely through experimental …
Modification Of 2d Materials Utilizing Functional Polymer Interfacial Layers, Ryan Selhorst
Modification Of 2d Materials Utilizing Functional Polymer Interfacial Layers, Ryan Selhorst
Doctoral Dissertations
This dissertation describes the modification of 2D transition metal dichalcogenides (TMDCs). These materials exhibit unique electronic properties, ranging from metallic to insulating, and can transport either electrons (n-type) or holes (p-type). Polymers containing electronically-active moieties offer a path to control the electronic properties of a 2D material without altering the inherent structure of the semiconductor. This dissertation focuses on the synthesis of polymers bearing chalcogen-rich or zwitterionic moieties to alter the electronic and solution properties of 2D materials. Chapter 2 describes polymers containing sulfur-rich tetrathiafulvalene (TTF) and their effects as electroactive coatings on the TMDC molybdenum disulfide (MoS2). …
Impact Of Chemical Doping On The Thermoelectric Charge Transport Of Organic Semiconductors, Connor J. Boyle
Impact Of Chemical Doping On The Thermoelectric Charge Transport Of Organic Semiconductors, Connor J. Boyle
Doctoral Dissertations
The thermoelectric properties of organic semiconductors allow them to directly convert heat into electricity without the use of moving parts and to directly convert electricity into heat without the use of working fluids. These properties offer opportunities for the generation of electricity from non-conventional or renewable sources of heat and for refrigeration without the risk of leaking harmful working fluids at any length scale down to the nanoscale. Since organic materials are lightweight, flexible, and made from abundant resources, these opportunities could one day become affordable for widespread use and could be expanded to include specialized and otherwise difficult to …
Voltage-Driven Polyelectrolyte Complexation Inside A Nanopore, Prabhat Tripathi
Voltage-Driven Polyelectrolyte Complexation Inside A Nanopore, Prabhat Tripathi
Doctoral Dissertations
This thesis investigates how a pair of oppositely charged macromolecules can be driven by an electric field to form a polyelectrolyte complex inside a nanopore. To observe and isolate an individual complex pair, a model protein nanopore, embedded in artificial phospholipid membrane, allowing compartmentalization (cis/trans) is employed. A polyanion in the cis and a polycation in the trans compartments are subjected to electrophoretic capture by the pore. We find that the measured ionic current across the pore has a distinguishable signature of complex formation, which is different from the signature of the passage of individual molecules …
The Balance Between Dipole-Dipole Interactions And Steric Exclusion On Ordering In Cationic Polymers, Chinomso Nwosu
The Balance Between Dipole-Dipole Interactions And Steric Exclusion On Ordering In Cationic Polymers, Chinomso Nwosu
Doctoral Dissertations
Structure-property correlations in charged polymers is an interesting facet of polymer science. Understanding the effects of intermolecular forces on the morphologies of polymers can lead to the design of membranes with desired structures to improve properties, for example ion conductivity. In random, comb-shaped polycations, competing intermolecular forces result in two different short-range orderings. Side-chain steric repulsion results in backbone-backbone morphology characterized by periodic spacing between polymer backbones. However, dipole - dipole attraction in these polycations can facilitate the formation of ionomer cluster morphology characterized by a spacing between clustered dipoles. Although both of these short-range orderings have disparate origins, their …
The Dissociative Chemisorption Of Methane And Its Isotopologues On Metal Surfaces, Han Guo
The Dissociative Chemisorption Of Methane And Its Isotopologues On Metal Surfaces, Han Guo
Doctoral Dissertations
The dissociative chemisorption of small molecules on metal surfaces is an important step in many heterogeneous catalytic processes, and has received considerable scientific attention. In this thesis, a quantum approach based on the reaction path Hamiltonian is used to explore the dissociative chemisorption of methane and its deuterated isotopologues on several metal surfaces. The theoretical approach is described in Chapter 2. This approach treats all 15 degrees of freedom of the methane molecule, and includes the effects of lattice motion, allowing us to examine the translational and vibrational enhancements, mode- and bond-selectivity and the surface temperature dependence observed in experiments. …
Combined Spectroscopic And Scanning Probe Studies Of Electronic Interactions In Nanostructured 1d And 2d Semiconductors, Peijian Wang
Combined Spectroscopic And Scanning Probe Studies Of Electronic Interactions In Nanostructured 1d And 2d Semiconductors, Peijian Wang
Doctoral Dissertations
This dissertation includes the exploration about the following research questions: 1. What is the correlation between the work function and ground state interactions in organic semiconductor assemblies? 2. How do non-covalent chemical doping tune the work function in MoS2? 3. Are there surface charges in the Aluminum doped ZnO nanocrystals (AZO) and what's the evolution of the surface charges and polarizabilities from undoped AZO to doped AZO? 4. How is the homogeneity like during doping in the organic thermoelectric materials? The techniques we employed in the research is the spatially registered Kelvin Probe Force Microscopy and Photoluminescence spectroscopy …
Photofragment Imaging Fast Ion Beams, Michael D. Johnston Jr.
Photofragment Imaging Fast Ion Beams, Michael D. Johnston Jr.
Doctoral Dissertations
Metal-containing ions have been the subject of much research due to their roles in catalytic activation and small cluster chemistries. However, they can be difficult to study both experimentally and theoretically, and new approaches are needed. The goal of the research described here is to characterize the electronic structures and thermodynamics of metal-containing ions using gas-phase spectroscopy experiments performed on a powerful new instrument. Presented in the following chapters are the details of a recently built velocity map imaging mass spectrometer that is capable of imaging the photofragments of trap-cooled (≥7K) ions produced in a versatile ion source. This instrument …
Spectroscopic Studies Of Gas-Phase Metal Cation Complexes With Alkanes And Ammonia, Muhammad Affawn Ashraf
Spectroscopic Studies Of Gas-Phase Metal Cation Complexes With Alkanes And Ammonia, Muhammad Affawn Ashraf
Doctoral Dissertations
Understanding the non-covalent interaction between metals and small ligands such as methane and ammonia is of key importance because of their industrial and biological applications. However, these interactions are difficult to study and quantify in the bulk phase due to the interaction with neighboring molecules or atoms. Gas phase spectroscopy of mass-selected clusters is a powerful technique that overcomes this challenge by allowing clusters with known composition to be studied in the gas phase. In this thesis, we investigate the interaction between three types of small molecular ligands with metal and metal cluster ions, and answer questions about their geometries …
Spectroscopic Studies Of Gas-Phase Transition Metal Complexes Of Cations And Cluster Ions With Methane And Water, Christopher Copeland
Spectroscopic Studies Of Gas-Phase Transition Metal Complexes Of Cations And Cluster Ions With Methane And Water, Christopher Copeland
Doctoral Dissertations
The study of the non-covalent interactions between metals ions and ligands such as water and methane are key to understanding many processes including solvation, homogeneous catalysis and metals in biology. Similarly, the study of interactions between transition metal ions and cluster ions with hydrocarbons is of great importance in the understanding of C-H activation reactions which are involved in generation of fuels. Gas-phase metal complexes are good models for understanding the intrinsic interactions between the metal and the ligand. Understanding the mechanisms behind these interactions can be done by characterizing the structure and bonding in the molecular reactants, products, and …
Vitreous Gel Physics, Svetlana Morozova
Vitreous Gel Physics, Svetlana Morozova
Doctoral Dissertations
The transparent vitreous, which fills the posterior cavity of the eye, is incredibly engineered. The charged polyelectrolyte hyaluronic acid (HA) network swells to maintain the pressure in the eye, while stiff collagen type II bundles help absorb any external mechanical shock. Our investigations have contributed to a few key developments related to the physical properties of the vitreous: (1) The stiff collagen network that supports the soft gel network is self-assembled from single triple-helix collagen proteins. Electrostatic interactions drive this assembly, such that the size and concentration are optimized at physiological salt concentrations. The width of the assemblies remarkably changes …
Synthesis And Characterization Of Polymeric Anion Exchange Membranes, Wenxu Zhang
Synthesis And Characterization Of Polymeric Anion Exchange Membranes, Wenxu Zhang
Doctoral Dissertations
As alkaline anion exchange membrane fuel cells (AAEMFC) are regarded as promising and important energy devices, the development of high performance anion exchange membranes are in urgent need, as well as fundamental investigation on the structure-property relationship, which are the motivation of this dissertation. Three different polymer systems are presented and focused on polymer synthesis, material morphology, and ion transport phenomena. Crosslinked membranes are promising as practical materials, however, the understanding and further improvement of its performance is hindered by the lack of an ordered morphology or well-defined chemical structure. In Chapter 2, a series of crosslinked membranes were design …
Nanomaterials At Liquid/Liquid Interfaces: Assembly And Rheology, Tao Feng
Nanomaterials At Liquid/Liquid Interfaces: Assembly And Rheology, Tao Feng
Doctoral Dissertations
This dissertation concentrated on the behavior of nanomaterials at liquid/liquid interfaces. A strategy of segregating acid-treated SWCNTs at oil/water interfaces was developed by adding amine-terminated polystyrene (PS-NH2) in the oil phase. Electrostatic binding between carboxylic acid of SWCNTs and amine drives the assembly of SWCNTs, monitored by pendant drop tensiometry and confocal microscopy. A sharp transition of interfacial segregation against SWCNT solution pH was revealed, with the transition point at the pKa of carboxyl. The reduced SWCNT surface charge density at low pH was found to be beneficial for segregation due to the attenuated repulsions between adsorbed …
Contact Angles And Contact Lines Around Particles At Isotropic And Anisotropic Liquid Interfaces, Nesrin Senbil
Contact Angles And Contact Lines Around Particles At Isotropic And Anisotropic Liquid Interfaces, Nesrin Senbil
Doctoral Dissertations
Liquid interfaces, capillarity and self-assembly of particles at interfaces are important in nature and technology. When a particle is adsorbed to a liquid interface, the contact line of the particle with the liquid interface and the associated contact angle are the crucial parameters that drive assembly of the particles. We looked at how the shape of the liquid interface and the shape of the particle affect the contact angle and the shape of the contact line. We used millimeter-sized PDMS-coated glass spheres and measured the contact angles at isotropic (planar) and anisotropic interfaces (saddle and cylindrical in shape). Anisotropy of …
Impact Of Fabrication Parameters On The Internal Structure Of Poly(3-Hexylthiophene) Nanoparticles, Dana Desiree Algaier
Impact Of Fabrication Parameters On The Internal Structure Of Poly(3-Hexylthiophene) Nanoparticles, Dana Desiree Algaier
Doctoral Dissertations
Morphological control of organic functional materials is central to understanding and improving upon current technologies. The ability to create hierarchical assemblies with purposeful design from nano to meso scale has remained largely unattainable. This body of work aims to provide a foundation for creating nanoscale domains of poly (3-hexylthiophene) (P3HT) that can be used as building blocks to larger scale assemblies. We present a method for the fabrication of P3HT nanoparticles on the ability to vary the particle size and more importantly, the internal structure. We have identified the oil phase and surfactant as parameters able to influence the nature …
Quantum Calculations Of Aldol Condensation In Acidic Zeolites, Angela N. Migues
Quantum Calculations Of Aldol Condensation In Acidic Zeolites, Angela N. Migues
Doctoral Dissertations
We have used Density Functional Theory to model the mixed aldol condensation reaction catalyzed by acidic zeolites. We have studied the convergence of barriers for the keto-enol tautomerization of acetone in cluster models of HZSM-5 and HY ranging in size from 3-37T. A key finding was that activation barriers for keto-enol tautomerization of acetone in both zeolites (~20 kcal/mol) are significantly higher than those for the condensation reaction between the acetone enol and formaldehyde in 11T cluster models of HZSM-5 and HY. Moreover we found that three zeolite clusters of HZSM-5, similarly sized but including different structural features of the …
Protein Charge Anisotropy Mediated Self-Association And Phase Separation, Daniel P. Seeman
Protein Charge Anisotropy Mediated Self-Association And Phase Separation, Daniel P. Seeman
Doctoral Dissertations
Protein charge anisotropy results from the asymmetric distribution of charged residues on the exterior of a particular protein. Interactions between proteins and other macromolecules can be described in terms of attractive electrostatics; since electrostatic free energies, at optimal I, are on the order of kT, it is unlikely that such associations would result in desolvation, thus it is reasonable to consider such intermolecular attractions as being mediated by hydrated protein surfaces. Such interactions can be broken down in terms of a single protein interacting with a range of “binding partners”, including (1) protein-protein interactions, (2) protein-polymer interactions, and …