Physical Sciences and Mathematics Commons^™

Temporal Variations In Spring Water Chemistry And Comparison Of Variable Paleozoic Aquifer Discharges In The Ridge And Valley Province Of Northwestern Georgia, Oliver Wood Costello

Geosciences Theses

The fluctuations in solute concentrations from eight springs in the Ridge and Valley Province in northwestern Georgia were used to determine flow types and to measure each aquifer’s ability to remove contamination. The target springs are located along a northeast trending line in the Ridge and Valley Province of northwest Georgia. This study determined and interpreted the fluctuations in chemistry of each of the sampled spring’s water based upon temporal variations of precipitation in the area and variations in the chemistries measured at each weekly sampling event. Analysis determined that carbonate springs that showed characteristics of diffuse flow, including stable …

Primary Decomposition And Secondary Representation Of Modules Over A Commutative Ring, Muslim Baig

Mathematics Theses

This paper presents the theory of Secondary Representation of modules over a commutative ring and their Attached Primes; introduced in 1973 by I. MacDonald as a dual to the important theory of associated primes and primary decomposition in commutative algebra. The paper explores many of the basic aspects of the theory of primary decomposition and associated primes of modules in the hopes to delineate and motivate the construction of a secondary representation, when possible. The thesis discusses the results of the uniqueness of representable modules and their attached primes, and, in particular, the existence of a secondary representation for Artinian …

A New Parallel Algorithm For Planarity Testing, Rebecca Ingram

Computer Science Honors Theses

Determining whether a graph is planar is both theoretically and practically interesting. Although several sequential algorithms have been introduced which accomplish planarity testing in O(V ) time for graphs with V vertices, very few of these have been parallelized. In a recent comparison of sequential planarity testing algorithms, the newest algorithms were found to be fastest; however, these are the ones which have not been parallelized. The goal of this thesis is to introduce a method for parallelizing one of the newest planarity testing algorithms.

Observation Of Double-Charge Discrete Vortex Solitons In Hexagonal Photonic Lattices, B Terhalle, T Richter, Kjh Law, D Gories, P Rose, Tj Alexander, Pg Kevrekidis, As Desyatnikov, W Krolikowski, F Kaiser, C Denz, Ys Kivshar

Panos Kevrekidis

We report on the experimental observation of stable double-charge discrete vortex solitons generated in hexagonal photonic lattices created optically in self-focusing nonlinear media and show that single-charge vortex solitons are unstable in analogous conditions. Subsequently, we study, both theoretically and experimentally, the existence and stability of spatial vortex solitons in two-dimensional hexagonal photonic lattices. We demonstrate that the stability of the double-charge vortices is a consequence of the intersite power exchange in the vortex soliton, and we provide a simple stability criterion on the basis of the analysis of the corresponding discrete nonlinear model. We extend our analysis to the …

The Responses Of Blue Crabs (Callinectes Sapidus) To Hypoxia/Hypercapnia In Freshwater, James Martin

Theses and Dissertations

The present research examined respiratory responses of blue crabs to long term (4, 13, and 21 days) hypercapnic hypoxia in freshwater at 23 C. Hypoxic conditions (50-60 & 75-85 mmHg O2) were induced by allowing the crabs to consume their oxygen supply, resulting in a hypercapnic induced decrease in pH that remained through the exposure. Postbranchial hemolymph responses to hypoxia/hypercapnia in freshwater demonstrate decreases in PO2, increases in PCO2, and decreases in pH. Lactate levels decreased over time, but hemocyanin concentration was highly variable with no trends. PH, lactate, and hemocyanin observations also demonstrated high variability and a variety of …

Primary Decomposition In Non Finitely Generated Modules, Somaya Muiny

Mathematics Theses

In this paper, we study primary decomposition of any proper submodule N of a module M over a noetherian ring R. We start by briefly discussing basic facts about the very well known case where M is a finitely generated module over a Noetherian ring R, then we proceed to discuss the general case where M is any module over a Noetherian ring R. We put a lot of focus on the associated primes that occur with the primary decomposition, essentially studying their uniqueness and their relation to the associated primes of M/N.

Synthesis, Structure And Function Studies Of Selenium And Tellurium Derivatized Nucleic Acids, Jia Sheng

Chemistry Dissertations

Nucleic acids play important roles in living systems by storing and transferring genetic information and directing protein synthesis. Recently, it was found that nucleic acids can catalyze chemical and biochemical reactions similar to protein enzymes. In addition, they can also serve as drug targets for the treatment of deadly diseases such as AIDS and cancers. As a result, the 3D structure study of nucleic acids and proteinnucleic acids complexes by X-ray crystallography has become one of the most active research areas. However, the two intrinsic bottlenecks of macromolecule X-ray crystallography, including crystallization and phase determination, have significantly limited its application …

Development Of An Adaptive Equalization Algorithm Using Acoustic Energy Density, Panu Tapani Puikkonen

Theses and Dissertations

Sound pressure equalization of audio signals using digital signal processors has been a subject of ongoing study for many years. The traditional approach is to equalize sound at a point in a listening environment, but because of its specific dependence on the room frequency response between a source and receiver position, this equalization generally causes the spectral response to worsen significantly at other locations in the room. This work presents both a time-invariant and a time-varying implementation of an adaptive acoustic energy density equalization filter for a one-dimensional sound field. Energy density equalization addresses the aforementioned challenge and others that …

The Rotational Spectrum Of The Fed Radical In Its X4Δ State, Measured By Far-Infrared Laser Magnetic Resonance, Michael Jackson, Lyndon R. Zink, Jonathan P. Towle, Neil Riley, John M. Brown

All Faculty Scholarship for the College of the Sciences

Transitions between the spin-rotational levels of the FeD radical in the v = 0level of the X ⁴Δ ground state have been detected by the technique of laser magnetic resonance at far-infrared wavelengths. Pure-rotational transitions have been observed for the three lowest spin components. Lambda-type doubling is resolved on all the observed transitions; nuclear hyperfine structure is not observed. The energy levels of FeD are strongly affected by the breakdown of the Born–Oppenheimer approximation and cannot be modeled accurately by an effective Hamiltonian. The data are therefore fitted to an empirical formula to yield term values and g-factors for …

Race, Place, And Identity: Examining Place Identity In The Racialized Landscape Of Buckhead, Atlanta, Robert Edward Cochran

Geosciences Theses

This thesis examines the role of racialized practices in the discourses and processes that alter place identity. Drawing on ethnography from the East Village of Buckhead, a once vibrant nightlife district in Atlanta, I examine how discourses of danger, colorblindness, and the race card have been employed to “whitewash” the discussions about the redevelopment of the Village. In effect, the business and civic elite of Atlanta (and Buckhead) deployed racialized conceptualizations of group identity. In particular, they utilized “public safety” discourses to influence the Atlanta city government to support the redevelopment effort. This led to the elimination of the establishments …

Analysis Of Stream Runoff Trends In The Blue Ridge And Piedmont Of Southeastern United States, Usha Kharel

Geosciences Theses

The purpose of the study was to examine the temporal trends of three monthly variables: stream runoff, rainfall and air temperature and to find out if any correlation exists between rainfall and stream runoff in the Blue Ridge and Piedmont provinces of the southeast United States. Trend significance was determined using the non-parametric Mann-Kendall test on a monthly and annual basis. GIS analysis was used to find and integrate the urban and non-urban stream gauging, rainfall and temperature stations in the study area. The Mann-Kendall test showed a statistically insignificant temporal trend for all three variables. The correlation of 0.4 …

Bilinear Immersed Finite Elements For Interface Problems, Xiaoming He

Mathematics and Statistics Faculty Research & Creative Works

In this dissertation we discuss bilinear immersed finite elements (IFE) for solving interface problems. The related research works can be categorized into three aspects: (1) the construction of the bilinear immersed finite element spaces; (2) numerical methods based on these IFE spaces for solving interface problems; and (3) the corresponding error analysis. All of these together form a solid foundation for the bilinear IFEs.

The research on immersed finite elements is motivated by many real world applications, in which a simulation domain is often formed by several materials separated from each other by curves or surfaces while a mesh independent …

Collaborative Targeted Maximum Likelihood Estimation, Mark J. Van Der Laan, Susan Gruber

U.C. Berkeley Division of Biostatistics Working Paper Series

Collaborative double robust targeted maximum likelihood estimators represent a fundamental further advance over standard targeted maximum likelihood estimators of causal inference and variable importance parameters. The targeted maximum likelihood approach involves fluctuating an initial density estimate, (Q), in order to make a bias/variance tradeoff targeted towards a specific parameter in a semi-parametric model. The fluctuation involves estimation of a nuisance parameter portion of the likelihood, g. TMLE and other double robust estimators have been shown to be consistent and asymptotically normally distributed (CAN) under regularity conditions, when either one of these two factors of the likelihood of the data is …

The Hd 40307 Planetary System: Super-Earths Or Mini-Neptunes?, Rory Barnes, Brian Jackson, Sean N. Raymond, Andrew A. West, Richard Greenberg

Brian Jackson

Three planets with minimum masses less than 10 M⊕ orbit the star HD 40307, suggesting these planets may be rocky. However, with only radial velocity data, it is impossible to determine if these planets are rocky or gaseous. Here we exploit various dynamical features of the system in order to assess the physical properties of the planets. Observations allow for circular orbits, but a numerical integration shows that the eccentricities must be at least 10–4. Also, planets b and c are so close to the star that tidal effects are significant. If planet b has tidal parameters similar to the …

The Impact Of Midbrain Cauterize Size On Auditory And Visual Responses' Distribution, Yan Zhang

Mathematics Theses

This thesis presents several statistical analysis on a cooperative project with Dr. Pallas and Yuting Mao from Biology Department of Georgia State University. This research concludes the impact of cauterize size of animals’ midbrain on auditory and visual response in brains. Besides some already commonly used statistical analysis method, such as MANOVA and Frequency Test, a unique combination of Permutation Test, Kolmogorov-Smirnov Test and Wilcoxon Rank Sum Test is applied to our non-parametric data. Some simulation results show the Permutation Test we used has very good powers, and fits the need for this study. The result confirms part of the …

Role Of Bcl-2 Family Members To Promote Glucocorticoid –Induced Apoptosis By Mek Inhibitors In Leukemic Cells, Anila Rambal

Theses and Dissertations

Glucocorticoids (GC) are common components of many chemotherapeutic regimens for lymphoid malignancies. GC-induced apoptosis involves an intrinsic BCL-2 family-regulated pathway. It has been shown that BIM (BCL-2 interacting mediator of cell death), a BH3-only pro-apoptotic protein, is up-regulated by dexamethasone (Dex) treatment in acute lymphoblastic leukemia (ALL) cells. Furthermore, BIM is inactivated by extracellular signal-regulated kinase (ERK)-mediated phosphorylation. We therefore hypothesized co-treatment with Dex and MEK/ERK inhibitors would promote apoptosis in ALL cells through BIM up-regulation and activation. We show here that a MEK inhibitor, PD184352 synergistically enhances Dex lethality in CCRF-CEM (T-ALL) cells. Co-treatment with Dex and PD184352 results …

Quaternions, Octonions, And The Quantization Of Games, Aden Omar Ahmed

Dissertations and Theses

We present an effect on classical games that is obtained by replacing the notion of probability distribution with the notions of quantum superposition and measurement. Our particular focus will be on two and three player games where each player has precisely two pure strategic choices. Games in normal form are represented as "payoff" functions.

Game quantization requires the extension of these functions to much larger domains. The main result of this work is the co-ordinatization of these extended functions by either the quaternions or octonions in order to obtain computationally friendly versions of these functions. This computational capability is then …

Adding Escience Assets To The Data Web, Herbert H. Van De Sompel, Carl Lagoze, Michael L. Nelson, Simeon Warner, Robert Sanderson, Pete Johnston

Computer Science Faculty Publications

Aggregations of Web resources are increasingly important in scholarship as it adopts new methods that are data-centric, collaborative, and networked-based. The same notion of aggregations of resources is common to the mashed-up, socially networked information environment of Web 2.0. We present a mechanism to identify and describe aggregations of Web resources that has resulted from the Open Archives Initiative - Object Reuse and Exchange (OAI-ORE) project. The OAI-ORE specifications are based on the principles of the Architecture of the World Wide Web, the Semantic Web, and the Linked Data effort. Therefore, their incorporation into the cyberinfrastructure that supports eScholarship will …

Veritas Observations Of The Bl Lac Object 1es 1218+304, P. T. Reynolds, Et. Al.

Physical Sciences Publications

The VERITAS collaboration reports the detection of very-high-energy gamma-ray emission from the high-frequency-peaked BL Lac object 1ES 1218+304 located at a redshift of z = 0.182. A gamma-ray signal was detected with a statistical significance of 10.4 standard deviations (10.4σ) for the observations taken during the first three months of 2007, confirming the discovery of this object made by the MAGIC collaboration. The photon spectrum between ~160 GeV and ~1.8 TeV is well described by a power law with an index of Γ = 3.08 ± 0.34stat ± 0.2sys. The integral flux is Φ(E>200GeV) = (12.2 ± 2.6) × …

Proc Report In Style, Wendy Boberg

Conference on Applied Statistics in Agriculture

I would like to demonstrate how you can create colorful PDF files using ODS (Output Delivery System) with different predefined style templates for the layout and color scheme of both tables and graphs. There are a few different ways you can customize your reports in the Report Procedure. Traffic lighting is a very popular technique and can be achieved by changing the font and/or the background colors. I prefer to customize my reports by adding background color to highlight a row, column, and/or cell in a table.

I will share my favorite styles and show you how to look at …

Using Time Series To Study Effect Of Air Temperature On Body Temperature Of Cows In Puerto Rico, Y. Zeng, A. M. Parkhurst, J. Pantoja

Conference on Applied Statistics in Agriculture

Body temperature is an important measure for monitoring the health status of cows. The objective of this study is to (1) determine if a cow’s body temperature is related to ambient temperature, relative humidity, and/or temperature humidity index (THI); (2) look for signs of heat stress. The data are collected at five minute intervals during the summer months (December through February) in Puerto Rico. Regression analysis and a succession of time series analyses are conducted in time domains. Nonparametric spectral estimation and cross-spectra analysis are also performed in the frequency domain. A search for indications of heat stress is performed …

Comparing Experimental Designs For A Bi-Logistical Model Used To Estimate Heat Stress When Moving Feedlot Cattle, X. Li, A. M. Parkhurst, T. L. Mader

Conference on Applied Statistics in Agriculture

Processing and handling cattle requires expenditure of energy causing an elevation of body temperature, depending on the ambient conditions. Therefore, caution should be exercised in moving cattle, especially during summer. More knowledge of the dynamics of body temperature, (Tb), could lead to specific recommendations on how far and under what conditions cattle can be moved before becoming thermally challenged. Data comes from feedlot trials conducted over four days. A bi-logistic mixed model of Tb is used to describe the effects of moving and handling on Tb. This model provides estimates for several important biological parameters describing the thermal challenge and …

Using Time Series To Study Dynamics Of Sweat Rates Of Holstein Cows Exposed To Initial And Prolonged Solar Heat Stress, B. Liang, A. M. Parkhurst, K. G. Gebremedhin, C. N. Lee, R. J. Collier, P. E. Hillman

Conference on Applied Statistics in Agriculture

Sweating is a very important way for cows to cope with heat stress. We are interested in the ability of Holstein cows to sustain high sweat or evaporation rates when exposed to solar radiation. There were two solar heat stress treatments: onset and prolonged. The onset data provided an opportunity to examine the impact of sudden exposure to a solar thermal load. The prolonged data allowed us to examine the impact of exposure to solar heat stress for an expended period (5 hr). Two questions of interest were: Do cows sweat at a constant or cyclic rate? Is there a …

Sequential Bayesian Classification: Dna Barcodes, Michael P. Anderson, Suzanne Dubnicka

Conference on Applied Statistics in Agriculture

DNA barcodes are short strands of nucleotide bases taken from the cytochrome c oxidase subunit 1 (COI) of the mitochondrial DNA (mtDNA). A single barcode may have the form C C G G C A T A G T A G G C A C T G and typically ranges in length from 255 to around 700 nucleotide bases. Unlike nuclear DNA (nDNA), mtDNA remains largely unchanged as it is passed from mother to o spring. It has been proposed that these barcodes may be used as a method of di erentiating between biological species (Hebert, Ratnasingham, and deWaard 2003). …

A Stem Profile Model Calibrated By Nonlinear Mixed-Effects Modeling, Yuqing Yang, Shongming Huang, Shawn X. Meng

Conference on Applied Statistics in Agriculture

A stem profile model was developed for black spruce (Picea mariana (Mill.) B.S.P.) trees in Alberta, Canada using a nonlinear mixed model approach. The model included two random parameters to capture between-subject variation and a general covariance structure to model within-subject residual autocorrelation. After evaluating various covariance structures, the 4-banded toeplitz and the spatial power structures were chosen for further evaluation. The 4-banded toeplitz structure provided a better fit. The model was further evaluated using an independent data set to examine its validation accuracy. Model validation results showed that the model was able to accurately predict stem diameters at the …

Mapping Qtl With Covariates, Cherie A. Ochsenfeld, Kristofer Jennings, R. W. Doerge

Conference on Applied Statistics in Agriculture

Quantitative trait loci (QTL) analysis is an effective tool for locating regions of the genome associated with a trait. Quantitative trait data are complex, and when statistically testing for the location of a QTL, the distribution of the test statistic is typically unknown. Historically, asymptotic thresholds have been difficult to derive for QTL analysis. Permutation testing has successfully provided significance thresholds for QTL analysis, but the need for exchangeability among the observations limits these empirically derived thresholds to simple linear models and does not permit the inclusion of important covariates in the model. We address the limitation of permutation theory …

Statistical Methods For Affymetrix Tiling Array Data, Gayla Olbricht, Nagesh Sardesai, Stanton B. Gelvin, Bruce A. Craig, R. W. Doerge

Conference on Applied Statistics in Agriculture

Tiling arrays are a microarray technology currently being used for a variety of genomic and epigenomic applications, such as the mapping of transcription, DNA methylation, and histone modifications. Tiling arrays provide high-density coverage of a genome, or a genomic region, through the systematic and sequential placement of probes without regard to genome annotation. In this paper we compare the Affymetrix tiling array to the Affymetrix GeneChip® 3’ expression array and propose methods that address statistical and bioinformatic issues that accompany gene expression data that are generated from Affymetrix tiling arrays. Real data from the model organism Arabidopsis thaliana motivate this …

Application Of The Dya Method To Compare Wheat Cultivar Yields, Arlin Feyerherm, Allan Fritz

Conference on Applied Statistics in Agriculture

At the 1998 conference, we proposed use of the DYA (differential yielding ability) method to compare the yielding ability of wheat cultivars. In this paper we review the method: its models and assumptions, and then show computation of sample statistics. An example will exhibit the output from performance trial yields when the method is applied in one of the nine ecogeographic areas of fall-planted wheat in the Midwest. Results of comparable outputs over years forecasted which cultivars would become popular with growers in Kansas

Comparative Study Of Time Series And Multiple Regression For Modeling Dependence Of Cattle Body Temperature On Environmental Variables During Heat Stress, M. Pathak, A. M. Parkhurst, R. A. Arias, T. L. Mader

Conference on Applied Statistics in Agriculture

During the summer, a challenging thermal environment is known to cause a significant reduction in food intake, growth, milk production, reproduction and even death in cattle. In this study, we attempt to characterize the relationship of cattle body temperature with several environmental variables, such as air temperature, soil surface temperature, relative humidity, solar radiation, wind speed, incoming and outgoing short and long wave radiation. For these variables, the measurements taken over time are correlated. This places severe restrictions on the applicability of many conventional statistical methods that depend on the assumption of independent and identically distributed errors. In addition to …

Statistical Issues In Next-Generation Sequencing, Paul L. Auer, R. W. Doerge

Conference on Applied Statistics in Agriculture

High throughput deep-sequencing or next-generation sequencing has emerged as an exciting new tool in a great number of applications (e.g., variant discovery, profiling of histone modifications, identifying transcription factor binding sites, resequencing, and transcriptome characterization). Even though this technology has generated unprecedented amounts of data in the scientific community few studies have looked carefully at its inherent variability. Recent studies of mRNA expression levels found little appreciable technical variation in Illumina’s Solexa sequencing platform (a next-generation sequencing device). Although these results are encouraging, they are limited to a specific platform and application, and have been made without any attention to …