Physical Sciences and Mathematics Commons^™

Sentiment Analysis Before And During The Covid-19 Pandemic, Emily Musgrove

Mathematics Summer Fellows

This study examines the change in connotative language use before and during the Covid-19 pandemic. By analyzing news articles from several major US newspapers, we found that there is a statistically significant correlation between the sentiment of the text and the publication period. Specifically, we document a large, systematic, and statistically significant decline in the overall sentiment of articles published in major news outlets. While our results do not directly gauge the sentiment of the population, our findings have important implications regarding the social responsibility of journalists and media outlets especially in times of crisis.

Optimizing Tumor Xenograft Experiments Using Bayesian Linear And Nonlinear Mixed Modelling And Reinforcement Learning, Mary Lena Bleile

Statistical Science Theses and Dissertations

Tumor xenograft experiments are a popular tool of cancer biology research. In a typical such experiment, one implants a set of animals with an aliquot of the human tumor of interest, applies various treatments of interest, and observes the subsequent response. Efficient analysis of the data from these experiments is therefore of utmost importance. This dissertation proposes three methods for optimizing cancer treatment and data analysis in the tumor xenograft context. The first of these is applicable to tumor xenograft experiments in general, and the second two seek to optimize the combination of radiotherapy with immunotherapy in the tumor xenograft …

Automs: Automatic Model Selection For Novelty Detection With Error Rate Control, Yifan Zhang, Haiyan Jiang, Haojie Ren, Changliang Zou, Dejing Dou

Machine Learning Faculty Publications

Given an unsupervised novelty detection task on a new dataset, how can we automatically select a “best” detection model while simultaneously controlling the error rate of the best model? For novelty detection analysis, numerous detectors have been proposed to detect outliers on a new unseen dataset based on a score function trained on available clean data. However, due to the absence of labeled anomalous data for model evaluation and comparison, there is a lack of systematic approaches that are able to select the “best” model/detector (i.e., the algorithm as well as its hyperparameters) and achieve certain error rate control simultaneously. …

Distance Based Image Classification: A Solution To Generative Classification’S Conundrum?, Wen-Yan Lin, Siying Liu, Bing Tian Dai, Hongdong Li

Research Collection School Of Computing and Information Systems

Most classifiers rely on discriminative boundaries that separate instances of each class from everything else. We argue that discriminative boundaries are counter-intuitive as they define semantics by what-they-are-not; and should be replaced by generative classifiers which define semantics by what-they-are. Unfortunately, generative classifiers are significantly less accurate. This may be caused by the tendency of generative models to focus on easy to model semantic generative factors and ignore non-semantic factors that are important but difficult to model. We propose a new generative model in which semantic factors are accommodated by shell theory’s [25] hierarchical generative process and non-semantic factors by …

Einstein-Roscoe Regression For The Slag Viscosity Prediction Problem In Steelmaking, Hiroto Saigo, Dukka Kc, Noritaka Saito

Michigan Tech Publications

In classical machine learning, regressors are trained without attempting to gain insight into the mechanism connecting inputs and outputs. Natural sciences, however, are interested in finding a robust interpretable function for the target phenomenon, that can return predictions even outside of the training domains. This paper focuses on viscosity prediction problem in steelmaking, and proposes Einstein-Roscoe regression (ERR), which learns the coefficients of the Einstein-Roscoe equation, and is able to extrapolate to unseen domains. Besides, it is often the case in the natural sciences that some measurements are unavailable or expensive than the others due to physical constraints. To this …

Mixture Models In Machine Learning, Soumyabrata Pal

Doctoral Dissertations

Modeling with mixtures is a powerful method in the statistical toolkit that can be used for representing the presence of sub-populations within an overall population. In many applications ranging from financial models to genetics, a mixture model is used to fit the data. The primary difficulty in learning mixture models is that the observed data set does not identify the sub-population to which an individual observation belongs. Despite being studied for more than a century, the theoretical guarantees of mixture models remain unknown for several important settings. In this thesis, we look at three groups of problems. The first part …

Split Classification Model For Complex Clustered Data, Katherine Gerot

Honors Theses

Classification in high-dimensional data has generated tremendous interest in a multitude of fields. Data in higher dimensions often tend to reside in non-Euclidean metric space. This prevents Euclidean-based classification methodologies, such as regression, from reliably modeling the data. Many proposed models rely on computationally-complex embedding to convert the data to a more usable format. Others, namely the Support Vector Machine, rely on kernel manipulation to implicitly describe the "feature space" to arrive at a non-linear decision boundary. The proposed methodology in this paper seeks to classify complex data in a relatively computationally-simple and explainable manner.

Machine Learning With Topological Data Analysis, Ephraim Robert Love

Doctoral Dissertations

Topological Data Analysis (TDA) is a relatively new focus in the fields of statistics and machine learning. Methods of exploiting the geometry of data, such as clustering, have proven theoretically and empirically invaluable. TDA provides a general framework within which to study topological invariants (shapes) of data, which are more robust to noise and can recover information on higher dimensional features than immediately apparent in the data. A common tool for conducting TDA is persistence homology, which measures the significance of these invariants. Persistence homology has prominent realizations in methods of data visualization, statistics and machine learning. Extending ML with …

The Effect Of Initial Conditions On The Weather Research And Forecasting Model, Aaron D. Baker

Electronic Theses and Dissertations

Modeling our atmosphere and determining forecasts using numerical methods has been a challenge since the early 20th Century. Most models use a complex dynamical system of equations that prove difficult to solve by hand as they are chaotic by nature. When computer systems became more widely adopted and available, approximating the solution of these equations, numerically, became easier as computational power increased. This advancement in computing has caused numerous weather models to be created and implemented across the world. However a challenge of approximating these solutions accurately still exists as each model have varying set of equations and variables to …

Clustering Web Users By Mouse Movement To Detect Bots And Botnet Attacks, Justin L. Morgan

Master's Theses

The need for website administrators to efficiently and accurately detect the presence of web bots has shown to be a challenging problem. As the sophistication of modern web bots increases, specifically their ability to more closely mimic the behavior of humans, web bot detection schemes are more quickly becoming obsolete by failing to maintain effectiveness. Though machine learning-based detection schemes have been a successful approach to recent implementations, web bots are able to apply similar machine learning tactics to mimic human users, thus bypassing such detection schemes. This work seeks to address the issue of machine learning based bots bypassing …

Machine Learning Morphisms: A Framework For Designing And Analyzing Machine Learning Work Ows, Applied To Separability, Error Bounds, And 30-Day Hospital Readmissions, Eric Zenon Cawi

McKelvey School of Engineering Theses & Dissertations

A machine learning workflow is the sequence of tasks necessary to implement a machine learning application, including data collection, preprocessing, feature engineering, exploratory analysis, and model training/selection. In this dissertation we propose the Machine Learning Morphism (MLM) as a mathematical framework to describe the tasks in a workflow. The MLM is a tuple consisting of: Input Space, Output Space, Learning Morphism, Parameter Prior, Empirical Risk Function. This contains the information necessary to learn the parameters of the learning morphism, which represents a workflow task. In chapter 1, we give a short review of typical tasks present in a workflow, as …

Ensemble Protein Inference Evaluation, Kyle Lee Lucke

Graduate Student Theses, Dissertations, & Professional Papers

The Protein inference problem is becoming an increasingly important tool that aids in the characterization of complex proteomes and analysis of complex protein samples. In bottom-up shotgun proteomics experiments the metrics for evaluation (like AUC and calibration error) are based on an often imperfect target-decoy database. These metrics make the inherent assumption that all of the proteins in the target set are present in the sample being analyzed. In general, this is not the case, they are typically a mix of present and absent proteins. To objectively evaluate inference methods, protein standard datasets are used. These datasets are special in …

Statistical Modeling Of Hpc Performance Variability And Communication, Jered B. Dominguez-Trujillo

Computer Science ETDs

Understanding the performance of parallel and distributed programs remains a focal point in determining how compute systems can be optimized to achieve exascale performance. Lightweight, statistical models allow developers to both characterize and predict performance trade-offs, especially as HPC systems become more heterogeneous with many-core CPUs and GPUs. This thesis presents a lightweight, statistical modeling approach of performance variation which leverages extreme value theory by focusing on the maximum length of distributed workload intervals. This approach was implemented in MPI and evaluated on several HPC systems and workloads. I then present a performance model of partitioned communication which also uses …

Computational Simulation And Analysis Of Neuroplasticity, Madison E. Yancey

Browse all Theses and Dissertations

Homeostatic synaptic plasticity is the process by which neurons alter their activity in response to changes in network activity. Neuroscientists attempting to understand homeostatic synaptic plasticity have developed three different mathematical methods to analyze collections of event recordings from neurons acting as a proxy for neuronal activity. These collections of events are from control data and treatment data, referring to the treatment of neuron cultures with pharmacological agents that augment or inhibit network activity. If the distribution of control events can be functionally mapped to the distribution of treatment events, a better understanding of the biological processes underlying homeostatic synaptic …

Bayesian Topological Machine Learning, Christopher A. Oballe

Doctoral Dissertations

Topological data analysis encompasses a broad set of ideas and techniques that address 1) how to rigorously define and summarize the shape of data, and 2) use these constructs for inference. This dissertation addresses the second problem by developing new inferential tools for topological data analysis and applying them to solve real-world data problems. First, a Bayesian framework to approximate probability distributions of persistence diagrams is established. The key insight underpinning this framework is that persistence diagrams may be viewed as Poisson point processes with prior intensities. With this assumption in hand, one may compute posterior intensities by adopting techniques …

Data, Stats, Go: Navigating The Intersections Of Cataloging, E-Resource, And Web Analytics Reporting, Rachel S. Evans, Wendy Moore, Jessica Pasquale, Andre Davison

Presentations

Do you trudge through gathering statistics at fiscal or calendar year-end? Do you wonder why you track certain things, thinking many seem outdated or irrelevant? Many places seem to keep counting certain statistics because "that's what they've always done." For e-resources, how do you integrate those with physical counts and reconcile the variations (updated e-resources versus re-cataloged physical items)? What about repository downloads and other web traffic? The quantity of stats that libraries track is staggering and keeps growing. This program will encourage attendees to stop and evaluate what and why they're gathering data and help identify possible alternatives to …

Deal: Differentially Private Auction For Blockchain Based Microgrids Energy Trading, Muneeb Ul Hassan, Mubashir Husain Rehmani, Jinjun Chen

Publications

Modern smart homes are being equipped with certain renewable energy resources that can produce their own electric energy. From time to time, these smart homes or microgrids are also capable of supplying energy to other houses, buildings, or energy grid in the time of available self-produced renewable energy. Therefore, researches have been carried out to develop optimal trading strategies, and many recent technologies are also being used in combination with microgrids. One such technology is blockchain, which works over decentralized distributed ledger. In this paper, we develop a blockchain based approach for microgrid energy auction. To make this auction more …

Reliability Comparisons Of Mobile Network Operators: An Experimental Case Study From A Crowdsourced Dataset, Engi̇n Zeydan, Ahmet Yildirim

Turkish Journal of Electrical Engineering and Computer Sciences

It is of great interest for Mobile Network Operators (MNOs) to know how well their network infrastructure performance behaves in different geographical regions of their operating country compared to their horizontal competitors. However, traditional network monitoring and measurement methods of network infrastructure use limited numbers of measurement points that are insufficient for detailed analysis and expensive to scale using an internal workforce. On the other hand, the abundance of crowdsourced content can engender various unforeseen opportunities for MNOs to cope with this scaling problem. This paper investigates end-to-end reliability and packet loss (PL) performance comparisons of MNOs using a previously …

Outlier Profiles Of Atomic Structures Derived From X-Ray Crystallography And From Cryo-Electron Microscopy, Lin Chen, Jing He, Angelo Facchiano

Computer Science Faculty Publications

Background: As more protein atomic structures are determined from cryo-electron microscopy (cryo-EM) density maps, validation of such structures is an important task. Methods: We applied a histogram-based outlier score (HBOS) to six sets of cryo-EM atomic structures and five sets of X-ray atomic structures, including one derived from X-ray data with better than 1.5 Å resolution. Cryo-EM data sets contain structures released by December 2016 and those released between 2017 and 2019, derived from resolution ranges 0–4 Å and 4–6 Å respectively. Results: The distribution of HBOS values in five sets of X-ray structures show that HBOS is sensitive distinguishing …

9th Annual Postdoctoral Science Symposium, University Of Texas Md Anderson Cancer Center Postdoctoral Association

Annual Postdoctoral Science Symposium Abstracts

The mission of the Annual Postdoctoral Science Symposium (APSS) is to provide a platform for talented postdoctoral fellows throughout the Texas Medical Center to present their work to a wider audience. The MD Anderson Postdoctoral Association convened its inaugural Annual Postdoctoral Science Symposium (APSS) on August 4, 2011.

The APSS provides a professional venue for postdoctoral scientists to develop, clarify, and refine their research as a result of formal reviews and critiques of faculty and other postdoctoral scientists. Additionally, attendees discuss current research on a broad range of subjects while promoting academic interactions and enrichment and developing new collaborations.

Modeling Stochastically Intransitive Relationships In Paired Comparison Data, Ryan Patrick Alexander Mcshane

Statistical Science Theses and Dissertations

If the Warriors beat the Rockets and the Rockets beat the Spurs, does that mean that the Warriors are better than the Spurs? Sophisticated fans would argue that the Warriors are better by the transitive property, but could Spurs fans make a legitimate argument that their team is better despite this chain of evidence?

We first explore the nature of intransitive (rock-scissors-paper) relationships with a graph theoretic approach to the method of paired comparisons framework popularized by Kendall and Smith (1940). Then, we focus on the setting where all pairs of items, teams, players, or objects have been compared to …

Automated Trading Systems Statistical And Machine Learning Methods And Hardware Implementation: A Survey, Boming Huang, Yuziang Huan, Li Da Xu, Lirong Zheng, Zhuo Zou

Information Technology & Decision Sciences Faculty Publications

Automated trading, which is also known as algorithmic trading, is a method of using a predesigned computer program to submit a large number of trading orders to an exchange. It is substantially a real-time decision-making system which is under the scope of Enterprise Information System (EIS). With the rapid development of telecommunication and computer technology, the mechanisms underlying automated trading systems have become increasingly diversified. Considerable effort has been exerted by both academia and trading firms towards mining potential factors that may generate significantly higher profits. In this paper, we review studies on trading systems built using various methods and …

Basketball Charts, Kevin Lewis

Williams Honors College, Honors Research Projects

The purpose of this project was to develop an interactive web application with access to a self-updating database of basketball statistics. This data would then be used to allow users to generate informative visuals about specific sets of players. Obtaining statistics from the National Basketball Association (NBA) for the 2018-19 season was the original target goal. By utilizing an open source and community driven API, this goal was successfully achieved. With the data in place, the development of the chart building tool that was intended to be the primary functionality of the web application could begin. Highcharts was used as …

Deep Machine Learning For Mechanical Performance And Failure Prediction, Elijah Reber, Nickolas D. Winovich, Guang Lin

The Summer Undergraduate Research Fellowship (SURF) Symposium

Deep learning has provided opportunities for advancement in many fields. One such opportunity is being able to accurately predict real world events. Ensuring proper motor function and being able to predict energy output is a valuable asset for owners of wind turbines. In this paper, we look at how effective a deep neural network is at predicting the failure or energy output of a wind turbine. A data set was obtained that contained sensor data from 17 wind turbines over 13 months, measuring numerous variables, such as spindle speed and blade position and whether or not the wind turbine experienced …

Bayesian Analytical Approaches For Metabolomics : A Novel Method For Molecular Structure-Informed Metabolite Interaction Modeling, A Novel Diagnostic Model For Differentiating Myocardial Infarction Type, And Approaches For Compound Identification Given Mass Spectrometry Data., Patrick J. Trainor

Electronic Theses and Dissertations

Metabolomics, the study of small molecules in biological systems, has enjoyed great success in enabling researchers to examine disease-associated metabolic dysregulation and has been utilized for the discovery biomarkers of disease and phenotypic states. In spite of recent technological advances in the analytical platforms utilized in metabolomics and the proliferation of tools for the analysis of metabolomics data, significant challenges in metabolomics data analyses remain. In this dissertation, we present three of these challenges and Bayesian methodological solutions for each. In the first part we develop a new methodology to serve a basis for making higher order inferences in metabolomics, …

Analysis Of 2016-17 Major League Soccer Season Data Using Poisson Regression With R, Ian D. Campbell

Undergraduate Theses and Capstone Projects

To the outside observer, soccer is chaotic with no given pattern or scheme to follow, a random conglomeration of passes and shots that go on for 90 minutes. Yet, what if there was a pattern to the chaos, or a way to describe the events that occur in the game quantifiably. Sports statistics is a critical part of baseball and a variety of other of today’s sports, but we see very little statistics and data analysis done on soccer. Of this research, there has been looks into the effect of possession time on the outcome of a game, the difference …

Fm Radio Signal Propagation Evaluation And Creating Statistical Models For Signal Strength Prediction In Differing Topographic Environments, Timothy Land

Electronic Theses and Dissertations

Radio wave signal strength and associated propagation models are rarely analyzed across individual geographic provinces. This study evaluates the effectiveness of the Radio Mobile model to predict radio wave signal strength in the Blue Ridge and Valley and Ridge physiographic provinces. A spectrum analyzer was used on 19 FM transmitters to determine model accuracy. Statistical analysis determined the significance between different terrain factors and signal strength. Field signal strength was found to be related to test site elevation, transmitter azimuth, elevation angle, transmitter elevation, path loss, and distance. Using 76 signal strength receiver sites, Ordinary Least Square regression models predicted …

Bot Or Not: Detecting Bots In Online Multiplayer Video Games Through User Input, Alexander Boutelle

Undergraduate Research Celebration 2018

No abstract provided.

On The Performance Of Some Poisson Ridge Regression Estimators, Cynthia Zaldivar

FIU Electronic Theses and Dissertations

Multiple regression models play an important role in analyzing and making predictions about data. Prediction accuracy becomes lower when two or more explanatory variables in the model are highly correlated. One solution is to use ridge regression. The purpose of this thesis is to study the performance of available ridge regression estimators for Poisson regression models in the presence of moderately to highly correlated variables. As performance criteria, we use mean square error (MSE), mean absolute percentage error (MAPE), and percentage of times the maximum likelihood (ML) estimator produces a higher MSE than the ridge regression estimator. A Monte Carlo …

Analyzing Sensor Based Human Activity Data Using Time Series Segmentation To Determine Sleep Duration, Yogesh Deepak Lad

Masters Theses

"Sleep is the most important thing to rest our brain and body. A lack of sleep has adverse effects on overall personal health and may lead to a variety of health disorders. According to Data from the Center for disease control and prevention in the United States of America, there is a formidable increase in the number of people suffering from sleep disorders like insomnia, sleep apnea, hypersomnia and many more. Sleep disorders can be avoided by assessing an individual's activity over a period of time to determine the sleep pattern and duration. The sleep pattern and duration can be …