Physical Sciences and Mathematics Commons^™

Long-Term Variation Of Summer Phytoplankton Communities In An Urban Lake In Relation To Lake Management And Climate Conditions, Yuan Xiao Grund

Dissertations and Theses

Eutrophication is one of the primary factors causing harmful cyanobacteria blooms in freshwater lakes; climate change such as warmer temperature can potentially further increase both frequency and intensity of blooms. This study investigated the long-term changes in water quality and summer phytoplankton assemblages in Oswego Lake, OR, in relation to lake management practices (e.g., hypolimnetic aeration and alum treatments), as well as climatic and regional meteorological conditions. Both water quality and phytoplankton assemblages were sampled biweekly during summer seasons between 2001 and 2013. The concentrations of total phosphorus (TP), soluble reactive phosphorus (SRP) and total nitrogen (TN) decreased 66%, 93% …

From Probabilistic Socio-Economic Vulnerability To An Integrated Framework For Flash Flood Prediction, Sepideh Khajehei

Dissertations and Theses

Flash flood is among the most hazardous natural disasters, and it can cause severe damages to the environment and human life. Flash floods are mainly caused by intense rainfall and due to their rapid onset (within six hours of rainfall), very limited opportunity can be left for effective response. Understanding the socio-economic characteristics involving natural hazards potential, vulnerability, and resilience is necessary to address the damages to economy and casualties from extreme natural hazards. The vulnerability to flash floods is dependent on both biophysical and socio-economic factors. This study provides a comprehensive assessment of socio-economic vulnerability to flash flood alongside …

Lone Wolves And Copycats: Assessing Policy And Infrastructure For Flood Hazard And Floodplain Management, Samantha L. Hamlin

Dissertations and Theses

To mitigate flood hazard, which affects millions of people every year, increasing numbers of communities are developing green infrastructure policies to not only mitigate the hazard, but to meet other community policy objectives, as green infrastructure is often cited for the multiple benefits it confers. To support the implementation of policies that help communities meet their policy objectives, however, it is imperative to understand how policy is innovated and adopted. To do so, I applied the internal determinants and regional diffusion models, what I refer to as the lone wolf and copycat models. In policy, a lone wolf innovates a …

Characterizing Temperature Variability States Across Southern South America And Associated Synoptic-Scale Meteorological Patterns, Judah Adam Detzer

Dissertations and Theses

The aim of this thesis is to understand spatiotemporal temperature variability in southern South America by identifying overarching temperature variability states and their associated synoptic-scale meteorological patterns. Further, the temporal frequency of occurrence of those temperature variability states is investigated as is the role of recurrent low-frequency modes of climate variability (El Niño Southern Oscillation and the Southern Annular Mode) on temperature variability. K-means cluster analysis is used to group all months during the period 1980-2015 into four primary categories for summer and winter separately. Monthly maps of temperature anomalies are provided as input to the k-means algorithm and the …

Structure Of Native Lens Connexin 46/50 Intercellular Channels By Cryo-Em, Janette B. Myers, Bassam G. Haddad, Susan E. O'Neill, Dror S. Chorev, Craig C. Yashioka, Carol V. Robinson, Daniel M. Zuckerman, Steve L. Reichow

Chemistry Faculty Publications and Presentations

Gap junctions establish direct pathways for cell-to-cell communication through the assembly of twelve connexin subunits that form intercellular channels connecting neighbouring cells. Co-assembly of different connexin isoforms produces channels with unique properties and enables communication across cell types. Here we used single-particle cryo-electron microscopy to investigate the structural basis of connexin co-assembly in native lens gap junction channels composed of connexin 46 and connexin 50 (Cx46/50). We provide the first comparative analysis to connexin 26 (Cx26), which—together with computational studies—elucidates key energetic features governing gap junction permselectivity. Cx46/50 adopts an open-state conformation that is distinct from the Cx26 crystal structure, …

Dispersion Analysis Of Hdg Methods, Jay Gopalakrishnan, Manuel Solano, Felipe Vargas

Mathematics and Statistics Faculty Publications and Presentations

This work presents a dispersion analysis of the Hybrid Discontinuous Galerkin (HDG) method. Considering the Helmholtz system, we quantify the discrepancies between the exact and discrete wavenumbers. In particular, we obtain an analytic expansion for the wavenumber error for the lowest order Single Face HDG (SFH) method. The expansion shows that the SFH method exhibits convergence rates of the wavenumber errors comparable to that of the mixed hybrid Raviart–Thomas method. In addition, we observe the same behavior for the higher order cases in numerical experiments.

High-Performance Self-Powered Uv Detector Based On Sno2-Tio2 Nanomace Arrays, Duo Chen, Lin Wei, Lingpan Meng, Yanxue Chen, Yufeng Tian, Shishen Yan, Liangmo Mei, Jun Jiao

Physics Faculty Publications and Presentations

Photoelectrochemical cell-typed self-powered UV detectors have attracted intensive research interest due to their low cost, simple fabrication process, and fast response. In this paper, SnO2-TiO2 nanomace arrays composed of SnO2 nanotube trunk and TiO2 nanobranches were prepared using soft chemical methods, and an environment-friendly self-powered UV photodetector using this nanostructure as the photoanode was assembled. Due to the synergistic effect of greatly accelerated electron-hole separation, enhanced surface area, and reduced charge recombination provided by SnO2-TiO2 nanomace array, the nanostructured detector displays an excellent performance over that based on bare SnO2 arrays. The impact of the growing time of TiO2 branches …

Combining Atomic Force Microscopy And Shear-Force Acoustic Near-Field Microscopy To Characterize Confined Mesoscopic Fluids, Monte Allen Kozell, Theodore Brockman, Andres H. La Rosa

Physics Faculty Publications and Presentations

An atomic force microscopy (AFM) cantilever is integrated into to a quartz tuning fork (QTF) to probe the viscoelastic properties of mesoscopic fluid layers confined between two solid surfaces under shear. Two procedures to fabricate the AFM/QTF probe are described herein. In the first, a nano-manipulator is used to transport a commercially available afm cantilever from its chip holder to the edge of a QTF tine. In the second, an afm cantilever is fabricated at the edge of the QTF tine itself. In both cases we exploit the capabilities of a dual-beam system (focused ion beam/scanning electron microscope), equipped with …

Confined Fluid Analyzed With Near-Field Acoustic Detection, Rodolfo Fernandez Rodriguez, Theodore Brockman, J. Bai, Andres H. La Rosa

Physics Faculty Publications and Presentations

Measurement of the damping and elastic interactions between two solids interfaces (one being the apex of a tapered probe that is attached to one tine of a quartz tuning fork while the other is a flat substrate) under relative lateral oscillatory motion are reported. The solid boundaries are separated by a nanometer sized gap, and emphasis is placed on the role played by the mesoscopic fluid trapped in between. The measurements were implemented using two new acoustic techniques that have been integrated into a tuning fork based scanning probe microscope; the whole metrology system offers sub-nanometer precision for controlling the …

Finite Element Method Analysis Of Whispering Gallery Acoustic Sensing, T. Le, H. Tran, Rodolfo Fernandez Rodriguez, C.J. Solano Salinas, Nima Laal, R. Bringas, J. Quispe, F. Segundo, Andres H. La Rosa

Physics Faculty Publications and Presentations

Whispering Gallery Acoustic Sensing (WGAS) has recently been introduced as a sensing feedback mechanism to control the probe-sample separation distance in scanning probe microscopy that uses a quartz tuning fork as a sensor (QTF-SPM). WGAS exploits the SPM supporting frame as a resonant acoustic cavity to monitor the nanometer-sized amplitude of the QTF oscillations. Optimal WGAS sensitivity depends on attaining an exact match between the cavity's frequency peak response and the TF resonance frequency. However, two aspects play against this objective: i) the unpredictable variability of the TF resonance frequency (upon attaching a SPM-probe to one of its tines), …

Probe Damage Evaluation In Frequency-Modulation Shear-Force Acoustic Near-Field Microscopy, Theodore Brockman, Rodolfo Fernandez Rodriguez, J. Bai, Monte Allen Kozell, Andres H. La Rosa

Physics Faculty Publications and Presentations

Shear-force acoustic near-field microscopy (SANM) and Whispering Gallery Acoustic Sensing have recently been introduced as a tandem system to characterize the viscoelastic response of fluids confined between two solid-boundaries in relative oscillatory lateral motion. SANM uses a) a laterally oscillating tapered probe (attached to a quartz tuning fork QTF) as one of the trapping boundaries, and b) an acoustic sensor (attached to the other flat-substrate boundary) that independently monitors the fluid’s acoustic emission. On the other and, WGAS is another technique that uses an acoustic transducer (attached to the frame holding the probe) to monitor the probe’s lateral motion amplitude. …

Instrumentation-Level Improvements In Shear-Force Near-Field Acoustic Microscopy, J. Bai, P. Devulapalli, Theodore Brockman, Andres H. La Rosa

Physics Faculty Publications and Presentations

The recently introduced Shear-force Near-field Acoustic Microscopy (SANM) brings a new sensing mechanism to the scanning probe microscopy family. SANM's ability to simultaneously monitor, in real time, several physical sample's responses presents some challenges for ensuring optimal operation; namely, avoid "cross-talk" among the multiple signals, address the compensation of thermal drift to ensure reproducibility of the measurements, and measuring the typical low-level signals obtained from nanometer-sized tested regions. Here, several improvements relevant to SANM, but valid for SPM in general, are addressed. i) The probe's coarse approach is performed via stepper motors, which are controlled either by a computer …

Dynamics Of Prochlorococcus Diversity And Photoacclimation During Short-Term Shifts In Water Column Stratification At Station Aloha, Anne W. Thompson, Ger Van Den Engh, Nathan A. Ahlgren, Kathleen Kouba, Samantha Ward, Samuel T. Wilson, David M. Karl

Biology Faculty Publications and Presentations

The cyanobacterium Prochlorococcus is the dominant phototroph in surface waters of the vast oligotrophic oceans, the foundation of marine food webs, and an important component of global biogeochemical cycles. The prominence of Prochlorococcus across the environmental gradients of the open ocean is attributed to its extensive genetic diversity and flexible chlorophyll physiology, enabling light capture over a wide range of intensities. What remains unknown is the balance between temporal dynamics of genetic diversity and chlorophyll physiology in the ability of Prochlorococcus to respond to a variety of short (approximately 1 day) and longer (months to year) changes in the environment. …

Samu: Design And Implementation Of Frequency Selectivity-Aware Multi-User Mimo For Wlans, Yongjiu Du, Yan Shi, Ehsan Aryafar, Pengfei Cui, Joseph Camp, Mung Chiang

Computer Science Faculty Publications and Presentations

The traffic demand of wireless networks is expected to increase 1000-fold over the next decade. In anticipation of such increasing data demand for dense networks with a large number of stations, IEEE 802.11ax has introduced key technologies for capacity improvement including Orthogonal Frequency-Division Multiple Access (OFDMA), multi-user multi-input multi-output (MU-MIMO), and greater bandwidth. However, IEEE 802.11ax has yet to fully define a specific scheduling framework, on which the throughput improvement of networks significantly depends. Even within a 20 MHz of bandwidth, users experience heterogeneous channel orthogonality characteristics across sub-carriers, which prevents access points (APs) from achieving the ideal multi-user gain. …

Aliased Tidal Variability In Mesoscale Sea Level Anomaly Maps, Edward Zaron, Richard D. Ray

Civil and Environmental Engineering Faculty Publications and Presentations

Sea level anomaly (SLA) maps are routinely produced by objective analysis of data from the constellation of satellite altimeter missions in operation since 1992. Beginning in 2014, changes in the Data Unification and Altimeter Combination System (DUACS) used to create the SLA maps resulted in improved spatial resolution of mesoscale variability, but it also increased the levels of aliased tidal variability compared to the methodology employed prior to 2014. The present work investigates the magnitude and spatial distribution of these tidal signals, which are typically smaller than 1 cmin the open ocean but can reach tens of centimeters in the …

Enhancing Value-Based Healthcare With Reconstructability Analysis: Predicting Cost Of Care In Total Hip Replacement, Cecily Corrine Froemke, Martin Zwick

Systems Science Faculty Publications and Presentations

Legislative reforms aimed at slowing growth of US healthcare costs are focused on achieving greater value per dollar. To increase value healthcare providers must not only provide high quality care, but deliver this care at a sustainable cost. Predicting risks that may lead to poor outcomes and higher costs enable providers to augment decision making for optimizing patient care and inform the risk stratification necessary in emerging reimbursement models. Healthcare delivery systems are looking at their high volume service lines and identifying variation in cost and outcomes in order to determine the patient factors that are driving this variation and …

Shear-Force Acoustic Near-Field Microscopy And Its Implementation In The Study Of Confined Mesoscopic Fluids, Theodore Alex Brockman

Dissertations and Theses

The recently developed Shear-Force Acoustic Near-Field Microscope (SANM) is used to investigate the viscoelastic properties of a mesoscopic fluid layer confined between two trapping boundaries, one being a stationary substrate and the other the apex of a laterally oscillating tapered probe. Hardware improvements and evaluation of the SANM-probe robustness will be a major focus of this thesis. The investigation first discusses characterization and recent developments made to the microscope, including: modifications to the sensor head, conditioning of the Nano positioners electrical drive signal, and the assessment of the probe against eventual plastic deformation or compliance against interactions with samples (the …

Early Detection Of Corrosion Via Hydrogel-Based Spectroelectrochemical Sensors, Capri Ann Price

Dissertations and Theses

The backbone of the industrialized world is comprised of refined, zerovalent metal, a material which thermodynamically favors an oxidative return to more chemically stable states. There are many methods used to slow or delay this process, such as protective coatings, sacrificial anodes, and alloys, but no method can entirely prevent corrosion. This body of work instead proposes detecting the earliest chemical markers of corrosion: that is, metal ions as they solubilize from a metal surface. Such information would allow maintenance personnel to make informed decisions about the necessity or lack thereof of preventive maintenance, and intervene before advanced damage has …

Alpine Ice Evidence Of A Three-Fold Increase In Atmospheric Iodine Deposition Since 1950 In Europe Due To Increasing Oceanic Emissions, Michel Legrand, Joseph R. Mcconnell, Susanne Preunkert, Monica M. Arienzo, Nathan Chellman, Kelly E. Gleason, Tomás Sherwen, Mat J. Evans, Lucy J. Carpenter

Environmental Science and Management Faculty Publications and Presentations

Iodine is an important nutrient and a significant sink of tropospheric ozone, a climate-forcing gas and air pollutant. Ozone interacts with seawater iodide, leading to volatile inorganic iodine release that likely represents the largest source of atmospheric iodine. Increasing ozone concentrations since the preindustrial period imply that iodine chemistry and its associated ozone destruction is now substantially more active. However, the lack of historical observations of ozone and iodine means that such estimates rely primarily on model calculations. Here we use seasonally resolved records from an Alpine ice core to investigate 20th century changes in atmospheric iodine. After carefully considering …

Annotation-Enabled Interpretation And Analysis Of Time-Series Data, Niveditha Venugopal

Dissertations and Theses

As we continue to produce large amounts of time-series data, the need for data analysis is growing rapidly to help gain insights from this data. These insights form the foundation of data-driven decisions in various aspects of life. Data annotations are information about the data such as comments, errors and provenance, which provide context to the underlying data and aid in meaningful data analysis in domains such as scientific research, genomics and ECG analysis. Storing such annotations in the database along with the data makes them available to help with analysis of the data. In this thesis, I propose a …

Ensemble Data Assimilation For Flood Forecasting In Operational Settings: From Noah-Mp To Wrf-Hydro And The National Water Model, Mahkameh Zarekarizi

Dissertations and Theses

The National Water Center (NWC) started using the National Water Model (NWM) in 2016. The NWM delivers state-of-the-science hydrologic forecasts in the nation. The NWM aims at operationally forecasting streamflow in more than 2,000,000 river reaches while currently river forecasts are issued for 4,000. The NWM is a specific configuration of the community WRF-Hydro Land Surface Model (LSM) which has recently been introduced to the hydrologic community. The WRF-Hydro model, itself, uses another newly-developed LSM called Noah-MP as the core hydrologic model. In WRF-Hydro, Noah-MP results (such as soil moisture and runoff) are passed to routing modules. Riverine water level …

Forest Collaborative Meeting Agenda, Hanoi, Vietnam, Environment For Development (Efd) Initiative

Forest Collaborative Research

Agenda for the Environment for Development (EfD) Initiative 12th Annual Meeting on November 3, 2018 at the Intercontinental Hotel in Hanoi Westlake, Vietnam.

Measuring And Modeling Evolution Of Cryoconite Holes In The Mcmurdo Dry Valleys, Antarctica, Felix Jacob Zamora

Dissertations and Theses

Cryoconite holes are vertical columns of meltwater within the shallow subsurface of glaciers. In the McMurdo Dry Valleys (MDV) of Antarctica cryoconite holes are a source of meltwater and harbor microbial communities in an otherwise arid environment with low biologic activity. The holes form as sediments on the ice surface, which are darker than the surrounding ice, are preferentially heated by solar radiation. The warm sediments melt the underlying ice and migrate downwards. An ice lid forms, isolating them from the below-freezing atmosphere enabling them to remain thawed. In this study, field observations, laboratory experiments, and numerical modeling are used …

Spatial Factor Models For High-Dimensional And Large Spatial Data: An Application In Forest Variable Mapping, Daniel Taylor-Rodríguez, Andrew O. Finley, Abhirup Datta, Chad Babcock, Hans-Erik Andersen, Bruce D. Cook, Douglas C. Morton, Sudipto Banerjee

Mathematics and Statistics Faculty Publications and Presentations

Gathering information about forest variables is an expensive and arduous activity. As such, directly collecting the data required to produce high-resolution maps over large spatial domains is infeasible. Next generation collection initiatives of remotely sensed Light Detection and Ranging (LiDAR) data are specifically aimed at producing complete-coverage maps over large spatial domains. Given that LiDAR data and forest characteristics are often strongly correlated, it is possible to make use of the former to model, predict, and map forest variables over regions of interest. This entails dealing with the high-dimensional (∼10² ) spatially dependent LiDAR outcomes over a large number …

The Dpg-Star Method, Leszek Demkowicz, Jay Gopalakrishnan, Brendan Keith

Portland Institute for Computational Science Publications

This article introduces the DPG-star (from now on, denoted DPG*) finite element method. It is a method that is in some sense dual to the discontinuous Petrov– Galerkin (DPG) method. The DPG methodology can be viewed as a means to solve an overdetermined discretization of a boundary value problem. In the same vein, the DPG* methodology is a means to solve an underdetermined discretization. These two viewpoints are developed by embedding the same operator equation into two different saddle-point problems. The analyses of the two problems have many common elements. Comparison to othermethods in the literature round out the newly …

Keyword-Based Patent Citation Prediction Via Information Theory, Farshad Madani, Martin Zwick, Tugrul U. Daim

Engineering and Technology Management Faculty Publications and Presentations

Patent citation shows how a technology impacts other inventions, so the number of patent citations (backward citations) is used in many technology prediction studies. Current prediction methods use patent citations, but since it may take a long time till a patent is cited by other inventors, identifying impactful patents based on their citations is not an effective way. The prediction method offered in this article predicts patent citations based on the content of patents. In this research, Reconstructability Analysis (RA), which is based on information theory and graph theory, is applied to predict patent citations based on keywords extracted from …

Systems Evolution And Engineering Thermodynamics, Terry Bristol

Systems Science Friday Noon Seminar Series

Despite impressive contributions, the philosophical foundations of systems theory remain in flux. In the practical context, the proper understanding of the relation of the systems framework to classical mechanics and quantum theory remains unresolved.

I argue our understanding of systems theory is advanced by recognizing the crucial link to engineering and thermodynamics. Engineering thermodynamics is more general than the historically dominant ‘rational mechanical’ thermodynamics of Clausius, Boltzmann, the Entropy Cult (viz. Jaynes’s MEP) and the recent information theory.

That systems theory’s philosophical foundations are in a philosophy of engineering and an engineering worldview should be no surprise, given the modern …

A Spacetime Dpg Method For The Wave Equation In Multiple Dimensions, Jay Gopalakrishnan, Paulina Sepulveda

Portland Institute for Computational Science Publications

A spacetime discontinuous Petrov-Galerkin (DPG) method for the linear wave equation is presented. This method is based on a weak formulation that uses a broken graph space. The wellposedness of this formulation is established using a previously presented abstract framework. One of the main tasks in the verification of the conditions of this framework is proving a density result. This is done in detail for a simple domain in arbitrary dimensions. The DPG method based on the weak formulation is then studied theoretically and numerically. Error estimates and numerical results are presented for triangular, rectangular, tetrahedral, and hexahedral meshes of …

Archetypes Of Community Wildfire Exposure From National Forests Of The Western Us, Cody Evers, Alan A. Ager, Max Nielsen-Pincus, Palaiologos Palaiologou, Ken Bunzel

Environmental Science and Management Faculty Publications and Presentations

Risk management typologies and their resulting archetypes can structure the many social and biophysical drivers of community wildfire risk into a set number of strategies to build community resilience. Existing typologies omit key factors that determine the scale and mechanism by which exposure from large wildfires occur. These factors are particularly important for land managing agencies like the US Forest Service, which must weigh community wildfire exposure against other management priorities. We analyze community wildfire exposure from national forests by associating conditions that affect exposure in the areas where wildfires ignite to conditions where exposure likely occurs. Linking source and …

Ecosystem Services And U.S. Stormwater Planning: An Approach For Improving Urban Stormwater Decisions, Todd K. Bendor, Vivek Shandas, Brian Miles, Kenneth Belt, Lydia Olander

Urban Studies and Planning Faculty Publications and Presentations

Green stormwater infrastructure (GI) is gaining traction as a viable complement to traditional “gray” infrastructure in cities across the United States. As cities struggle with decisions to replace deteriorating stormwater infrastructure in the face of looming issues such as population growth and climate change, GI may offer a costeffective, efficient, and sustainable approach. However, decision makers confront challenges when integrating GI within city plans, including uncertainties around GI capacity and maintenance, resistance to collaboration across city governance, increasingly inflexible financing, accounting practices that do not incorporate the multiple values of GI, and difficulties in incorporating ecological infrastructure into stormwater management. …