Physical Sciences and Mathematics Commons^™

Production And Fate Of Transparent Exopolymer Particles In The Ocean, Oliver Wurl, Lisa Miller, Svein Vagle

OES Faculty Publications

The production and fate of transparent exopolymer particles (TEP) have been investigated in various oceanic regions (tropical, temperate, and polar), from the sea surface microlayer (SML) to the deep ocean. Accumulation of TEP within the mixed layer was observed even in the absence of phytoplankton blooms, indicating abiotic processes are important in TEP production. The abiotic TEP aggregation rates measured in the tropical and temperate North Pacific and the Arctic Ocean averaged between 8 and 12 μmol C L^-1 d-¹. Depth profiles from under sea ice in the Arctic revealed the highest TEP concentrations, potentially released by …

Circulation, Vol. 17, No. 1, Center For Coastal Physical Oceanography, Old Dominion University, Chester E. Grosch

CCPO Circulation

Fall 2011 issue of CCPO Circulation featuring article "Langmuir Circulations" by Dr. Chester E. Grosch

2011 Meeting Missing Abstracts

Virginia Journal of Science

Abstracts not included in Virginia Journal of Science Volume 62, No. 1 and 2, presented at the 89th Annual Meeting of the Virginia Academy of Science, May 25-27, 2011, at the University of Richmond, Richmond VA.

Effect Of Reworking And Bioturbation On Sedimentary Reactive Iron Within A Microtidal Estuary, Amy Kathleen Pitts

OES Theses and Dissertations

Mixed redox conditions in sediments due to physical reworking may allow for enhanced remineralization of refractory organic matter due to Fe(III) redox cycling. In part this may occur because easily reducible iron oxides can be used by heterotrophic bacteria to remineralize the organic carbon. This phenomena has been observed in bioturbated sediments and in areas where physical factors (such as strong bottom currents) constantly rework the sediments. To specifically determine the effects of physical reworking and bioturbation on concentrations of easily reducible iron oxides, reactive iron concentrations were measured in surface sediments taken from two contrasting sites in the York …

Circulation Of The Western Antarctic Peninsula: Implications For Biological Production, Maria Andrea Piñones Valenzuela

OES Theses and Dissertations

The western Antarctic Peninsula (wAP) continental shelf is characterized by large persistent populations of Antarctic krill ( Enphausia superba) and by regions of enhanced concentrations of marine mammals and other predators (hot spots). This study focused on understanding the role of ocean circulation in providing retention/connectivity of wAP Antarctic krill populations and in maintaining biological hot spot regions. Numerical Lagrangian particle tracking simulations obtained from the Regional Ocean Modeling System (ROMS) configured for the wAP region provided quantitative estimates of retention, immigration and emigration from the wAP continental shelf. Additional simulations with a one-dimensional temperature-dependent growth model for krill …

A Google Earth-Based Framework For Visualization Of The Chesapeake Bay Operational Forecast System, Gary Lawson

Computational Modeling & Simulation Engineering Theses & Dissertations

For the persons who live near and travel the waters of the Chesapeake Bay, the data provided by the Chesapeake Bay Operational Forecast System (CBOFS) is invaluable. The information provided includes measurements and forecasts of surface wind velocity, water current velocity, salinity levels, water level, and temperature. Currently, this information is freely available on the CBQ_FS website hosted by the National Oceanographic and Atmospheric Administration (NOAA). It is offered as Nowcast, measured data, and Forecast data and is visualized using 2D images which describe a subset of the data in an easy to read chart. However, if the data were …

Use Of Optimal Control Models To Predict Treatment Time For Managing Tick-Borne Disease, Holly D. Gaff, Elsa Schaefer, Suzanne Lenhart

Biological Sciences Faculty Publications

Tick-borne diseases have been on the rise recently, and correspondingly, there is an increased interest in implementing control measures to decrease the risk. Optimal control provides an ideal tool to identify the best method for reducing risk while accounting for the associated costs. Using a previously published model, a variety of frameworks are assessed to identify the key factors influencing mitigation strategies. The level and duration of tick-reducing efforts are key metrics for understanding the successful reduction in tick-borne disease incidence. The results show that the punctuated nature of the tick's life history plays a critical role in reducing risk …

Application Of A Gene-Based Population Dynamics Model To The Optimal Egg Size Problem: Why Do Bivalve Planktotrophic Eggs Vary In Size?, Eric N. Powell, Jason Morson, John M. Klinck

CCPO Publications

The presumption is that egg quality influences larval survival and that egg size influences egg quality. Thus, larger eggs should be favored by selection. Counterweighing the tendency for egg size to increase is the number of eggs that can be produced if egg size remains small. We examine how egg size and egg number counterbalance in Crassostrea oysters, resulting in an average egg size near 50 mu m. Simulations imposing a diversity of ranges in larval survivorship-from little advantage for large eggs relative to small eggs to a great advantage-yield some anticipated outcomes in which genotypes generating larger eggs are …

Variable Helper Effects, Ecological Conditions, And The Evolution Of Cooperative Breeding In The Acorn Woodpecker, Walter D. Koenig, Eric L. Walters, Joseph Haydock

Biological Sciences Faculty Publications

The ecological conditions leading to delayed dispersal and helping behavior are generally thought to follow one of two contrasting scenarios: that conditions are stable and predictable, resulting in young being ecologically forced to remain as helpers (extrinsic constraints and the habitat saturation hypothesis), or that conditions are highly variable and unpredictable, leading to the need for helpers to raise young, at least when conditions are poor (intrinsic constraints and the hard life hypothesis). We investigated how variability in ecological conditions influences the degree to which helpers augment breeder fitness in the cooperatively breeding acorn woodpecker (Melanerpes formicivorus), a …

Iron Limitation Of A Springtime Bacterial And Phytoplankton Community In The Ross Sea: Implications For Vitamin B12 Nutrition, Erin M. Bertrand, Mak A. Saito, Peter A. Lee, Robert B. Dunbar, Peter N. Sedwick, Giacomo R. Ditullio

OES Faculty Publications

The Ross Sea is home to some of the largest phytoplankton blooms in the Southern Ocean. Primary production in this system has previously been shown to be iron limited in the summer and periodically iron and vitamin B-12 colimited. In this study, we examined trace metal limitation of biological activity in the Ross Sea in the austral spring and considered possible implications for vitamin B-12 nutrition. Bottle incubation experiments demonstrated that iron limited phytoplankton growth in the austral spring while B-12, cobalt, and zinc did not. This is the first demonstration of iron limitation in a Phaeocystis antarctica-dominated, early …

Stability Analysis And Application Of A Mathematical Cholera Model, Shu Liao, Jim Wang

Mathematics & Statistics Faculty Publications

In this paper, we conduct a dynamical analysis of the deterministic cholera model proposed in [9]. We study the stability of both the disease-free and endemic equilibria so as to explore the complex epidemic and endemic dynamics of the disease. We demonstrate a real-world application of this model by investigating the recent cholera outbreak in Zimbabwe. Meanwhile, we present numerical simulation results to verify the analytical predictions.

Insights Into Chemical Structure Changes Of Kerogen From Bituminous Coal In Response To Dike Intrusions Investigated By Advanced Solid-State 13C Nmr, Yuan Li

Chemistry & Biochemistry Theses & Dissertations

Variations in the chemical structures of kerogens From highly volatile bituminous coal located near two igneous dike intrusions in the Illinois Basin were examined in detail by advanced solid-state ¹³C nuclear magnetic resonance (NMR) spectroscopy. Spectral-editing techniques were used to identify specific functional groups. Direct polarization was used to quantify different functional groups. ¹H-¹³C two- dimensional heteronuclear NMR was used to examine connectivities and proximities, and ¹H-¹³C long-range recoupled dipolar dephasing was used to estimate aromatic cluster sizes. With decreasing distance to dike contacts and increasing thermal maturity (vitrinite reflectance R₀ from …

The Effect Of An Offshore Wind Turbine Array On Circulation In An Idealized Coastal Ocean, Mahmoud Kamel

OES Theses and Dissertations

The effect of arrays of wind turbines on circulation in the coastal ocean is analyzed with a coastal numerical model applied to a shallow coastal area like the Mid Atlantic Bight (MAB). A simplified model domain is specified with a linearly deepening shelf along a straight coastline. The initial density structure is a quasi-two layer situation with a sharp thermocline. Wind stress in most of the cases is either upwelling or downwelling favorable with constant amplitude continuing after a smooth start. There are two cases where oscillating wind forcing is used. Simulations consider wind arrays having different widths, different locations …

Old Dominion University Climate Change And Sea Level Rise Initiative, Summer Update 2011, Larry P. Atkinson (Editor)

CCSLRI Newsletters

Summer 2011 Newsletter of the Old Dominion University Climate Change and Sea Level Rise Initiative

Perfectly Matched Layer Absorbing Boundary Conditions For The Discrete Velocity Boltzmann-Bgk Equation, Elena Craig

Mathematics & Statistics Theses & Dissertations

Perfectly Matched Layer (PML) absorbing boundary conditions were first proposed by Berenger in 1994 for the Maxwell's equations of electromagnetics. Since Hu first applied the method to Euler's equations in 1996, progress made in the application of PML to Computational Aeroacoustics (CAA) includes linearized Euler equations with non-uniform mean flow, non-linear Euler equations, flows with an arbitrary mean flow direction, and non-linear clavier-Stokes equations. Although Boltzmann-BGK methods have appeared in the literature and have been shown capable of simulating aeroacoustics phenomena, very little has been done to develop absorbing boundary conditions for these methods. The purpose of this work was …

Effects Of 11 Years Of Co2 Enrichment On Root Biomass And Spatial Distribution In A Florida Scrub-Oak Ecosystem, Rachel Eilenfield Schroeder

Biological Sciences Theses & Dissertations

A Florida (USA) scrub-oak ecosystem was exposed to elevated atmospheric CO₂ in open-top chambers from 1996-2007. Minirhizotrons and ground-penetrating radar (GPR) were used to measure fine root (< 2 mm diameter) and coarse root (> 5 mm diameter) biomass, respectively. After 11 years of CO₂ enrichment, there was a trend of greater total root biomass under elevated CO₂. Fine root biomass exhibited a pattern of recovery and steady state throughout the study, with significant CO₂ stimulation observed only after disturbance. Greater root biomass under elevated CO₂ during recovery periods could result in greater carbon inputs belowground, alteration of the soil carbon …

Using The Web Infrastructure For Real Time Recovery Of Missing Web Pages, Martin Klein

Computer Science Theses & Dissertations

Given the dynamic nature of the World Wide Web, missing web pages, or "404 Page not Found" responses, are part of our web browsing experience. It is our intuition that information on the web is rarely completely lost, it is just missing. In whole or in part, content often moves from one URI to another and hence it just needs to be (re-)discovered. We evaluate several methods for a \justin- time" approach to web page preservation. We investigate the suitability of lexical signatures and web page titles to rediscover missing content. It is understood that web pages change over time …

Excitation-Induced Ge Quantum Dot Growth On Si(100)-2x1 By Pulsed Laser Deposition, Ali Oguz Er

Physics Theses & Dissertations

Self-assembled Ge quantum dots (QD) are grown on Si(100)-(2×1) with laser excitation during growth processes by pulsed laser deposition (PLD). In situ reflection-high energy electron diffraction (RHEED) and post-deposition atomic force microscopy (AFM) are used to study the growth dynamics and morphology of the QDs. A Q-switched Nd:YAG laser (λ = 1064 nm, 40 ns pulse width, 5 J/cm² fluence, and 10 Hz repetition rate) were used to ablate germanium and irradiate the silicon substrate. Ge QD formation on Si(100)-(2×1) with different substrate temperatures and excitation laser energy densities was studied. The excitation laser reduces the epitaxial growth temperature …

Improving The Efficiency Of Organic Solar Cells By Varying The Material Concentration In The Photoactive Layer, Kevin Anthony Latimer

Electrical & Computer Engineering Theses & Dissertations

Polymer-fullerene bulk heterojunction solar cells have been a rapidly improving technology over the past decade. To further improve the relatively low energy conversion efficiencies of these solar cells, several modifications need to be made to the overall device structure. Emerging technologies include cells that are fabricated with interfacial layers to facilitate charge transport, and tandem structures are being introduced to harness the absorption spectrum of polymers with varying bandgap energies.

When new structures are implemented, each layer of the cell must be optimized in order for the entire device to function efficiently. The most volatile layer of these devices is …

Automatic High-Fidelity 3d Road Network Modeling, Jie Wang

Computational Modeling & Simulation Engineering Theses & Dissertations

Many computer applications such as racing games and driving simulations frequently make use of 3D high-fidelity road network models for a variety of purposes. However, there are very few existing methods for automatic generation of 3D realistic road networks, especially for those in the real world. On the other hand, vast road network GIS data have been collected in the past and used by a wide range of applications, such as navigation and evaluation. A method that can automatically produce 3D high-fidelity road network models from 2D real road GIS data will significantly reduce both the labor and time needed …

Controls On The Formation Of Algal Blooms In The Lower Chesapeake Bay And Its Tributaries, Ryan Eric Morse

OES Theses and Dissertations

Algal blooms occur seasonally in the Chesapeake Bay and its tributaries, and while the consequences of algal blooms have been qualitatively and quantitatively assessed, the causes of algal blooms and mechanisms of bloom initiation are still not well understood despite decades of research. In order to understand nutrient dynamics and other factors that promote the initiation of algal blooms, the Lafayette River, a tidal sub-estuary of Chesapeake Bay that experiences seasonal algal blooms, was sampled daily in the fall of 2005. Three phytoplankton blooms (Chlorophyll a concentrations exceeding twice the average of monthly measurements from 2000-2009) occurred during this period, …

The Nature, Origin And Preservation Of Amide Organic Nitrogen In Organic Matter, Georgina Anne Mckee

Chemistry & Biochemistry Theses & Dissertations

Past studies have found much of nonliving sedimentary/aqueous nitrogen-containing organic matter (NCOM) is composed of amides, assumed to be peptides/proteins. Their lability calls into question their survival, and several hypotheses have been suggested to explain this. Using Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR-MS) and nuclear magnetic resonance (NMR) spectroscopy I investigated the molecular amide composition in sedimentary/aqueous systems while reassessing their preservation and formation routes.

Development of a suitable methodology is essential for successful NCOM study due to electrospray ionisation source requirements: sediment samples need to be rendered into solution. Based on NMR and FT-ICR-MS analysis, I determined …

Model-Based Analyses Of Nitrogen On The Mid-Atlantic Bight Continental Shelf, Tian Tian

OES Theses and Dissertations

The biogeochemistry of continental shelf systems is an important, but poorly quantified, component of the global cycling of nitrogen and carbon. In this study, simulations obtained from a one-dimensional (ID) biogeochemical model developed for the Middle Atlantic Bight (MAB) portion of the U.S. eastern continental shelf were analyzed to investigate nitrogen cycling processes. The 1D model included lower trophic level interactions and was forced by advective fields obtained from a corresponding three-dimensional biogeochemical model. Taylor and target diagram analyses, which compared in situ measurements of sea surface temperature (SST) and salinity, and chlorophyll and particulate organic carbon (POC) derived from …

A Framework For Dynamic Traffic Monitoring Using Vehicular Ad-Hoc Networks, Mohammad Hadi Arbabi

Computer Science Theses & Dissertations

Traffic management centers (TMCs) need high-quality data regarding the status of roadways for monitoring and delivering up-to-date traffic conditions to the traveling public. Currently this data is measured at static points on the roadway using technologies that have significant maintenance requirements. To obtain an accurate picture of traffic on any road section at any time requires a real-time probe of vehicles traveling in that section. We envision a near-term future where network communication devices are commonly included in new vehicles. These devices will allow vehicles to form vehicular networks allowing communication among themselves, other vehicles, and roadside units (RSUs) to …

Circulation, Vol. 16, No. 3, Center For Coastal Physical Oceanography, Old Dominion University, Larry P. Atkinson

CCPO Circulation

Spring 2011 issue of CCPO Circulation featuring article "Offshore Wind Power and Oceanography" by Larry Atkinson

Section Abstracts: Statistics

Virginia Journal of Science

Abstracts of the Statistics Section for the 89th Annual Meeting of the Virginia Academy of Science, May 25-27, 2011, University of Richmond, Richmond VA.

Section Abstracts: Environmenal Science

Virginia Journal of Science

Abstracts of the Environmental Sciences Section for the 89th Annual Meeting of the Virginia Academy of Science, May 25-27, 2011, University of Richmond, Richmond VA.

Section Abstracts: Chemistry

Virginia Journal of Science

Abstracts of the Chemistry Section for the 89th Annual Meeting of the Virginia Academy of Science, May 25-27, 2011, University of Richmond, Richmond VA.

Section Abstracts: Astronomy, Mathematics And Physics With Materials Science

Virginia Journal of Science

Abstracts for the Astronomy, Mathematics, and Physics with Materials Science Section for the 89th Annual Meeting of the Virginia Academy of Science, May 25-27, 2011, University of Richmond, Richmond VA.

Preliminary Analysis Of An Agent-Based Model For A Tick-Borne Disease, Holly Gaff

Biological Sciences Faculty Publications

Ticks have a unique life history including a distinct set of life stages and a single blood meal per life stage. This makes tick-host interactions more complex from a mathematical perspective. In addition, any model of these interactions must involve a significant degree of stochasticity on the individual tick level. In an attempt to quantify these relationships, I have developed an individual-based model of the interactions between ticks and their hosts as well as the transmission of tick-borne disease between the two populations. The results from this model are compared with those from previously published differential equation based population models. …