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Full-Text Articles in Physical Sciences and Mathematics

Homological Width And Turaev Genus, Adam Lowrance Jan 2009

Homological Width And Turaev Genus, Adam Lowrance

LSU Doctoral Dissertations

Khovanov homology and knot Floer homology are generalizations of the Jones polynomial and the Alexander polynomial respectively. They are bigraded Z-modules, and their underlying polynomials are recovered by taking the graded Euler characteristic. The two homologies share many characteristics, however their relationship has yet to be fully understood. In both Khovanov homology and knot Floer homology, the two gradings can be combined into a single diagonal grading. Homological width is a measure of the support of the homology with respect to the diagonal grading. In this thesis, we show that the homological width of Khovanov homology and knot Floer homology …


Assessing Linkages Between Petroleum Platforms And Pelagic Fishes Using Telemetry With Emphasis On Blue Runner (Caranx Crysos), Harmon Brown Jan 2009

Assessing Linkages Between Petroleum Platforms And Pelagic Fishes Using Telemetry With Emphasis On Blue Runner (Caranx Crysos), Harmon Brown

LSU Doctoral Dissertations

Petroleum platforms number greater than 4,200 in the Gulf of Mexico and Caranx crysos (blue runner) is one of the most abundant fish species around these platforms. Forty-six blue runner were tagged with acoustical transmitters in August 2005, though the study was terminated prematurely due to the impending arrival of Hurricane Katrina. Nineteen blue runner were tagged in September 2006 and tracked for up to two months. Blue runner exhibited limited site fidelity around the platforms in 2005. The home range of twenty-three blue runner was calculated in 2005. A significant difference was found between the fork length of the …


Iron Mediated Pecipitation Of Phenol: Protein Aggregates From Sugar Cane Juice, Lee R. Madsen Ii Jan 2009

Iron Mediated Pecipitation Of Phenol: Protein Aggregates From Sugar Cane Juice, Lee R. Madsen Ii

LSU Doctoral Dissertations

The Louisiana cane sugar industry is moving toward a vertically integrated arrangement where raw sugar producers will have an interest in refining. In the sugar refining process, raw sugar is affined to remove ~50 % of the color. The new refinery that will be built in Louisiana, however, will not include affining stations. To reduce costs of refining, either affining stations will need to be installed at each mill or new technologies that provide equivalent color reduction (~50% or ~750 IU) need to be implemented. As part of this dissertation a new technology for color reduction at raw sugar mills …


Spatial-Temporal Responses Of Louisiana Forests To Climate Change And Hurricane Disturbance, Fugui Wang Jan 2009

Spatial-Temporal Responses Of Louisiana Forests To Climate Change And Hurricane Disturbance, Fugui Wang

LSU Doctoral Dissertations

This dissertation research focused on three questions: (1) what is the current carbon stock in Louisiana’s forest ecosystems? (2) how will the biomass carbon stock respond to future climate change? and (3) how vulnerable are the coastal forest resources to natural disturbances, such as hurricanes? The research utilized a geographic information system, remote sensing techniques, ecosystem modeling, and statistical approaches with existing data and in-situ measurements. Future climate changes were adapted from predictions by the Community Climate System Model on the basis of low (B1), moderate (A1B), and high (A2) greenhouse gas emission scenarios. The study on forest carbon assessment …


Exploration Of Ternary Intermetallic Materials Using Tin And Gallium Flux, Edem Kodzo Okudzeto Jan 2009

Exploration Of Ternary Intermetallic Materials Using Tin And Gallium Flux, Edem Kodzo Okudzeto

LSU Doctoral Dissertations

The focus of this dissertation is the structure-property relationships of ternary intermetallic stannides and gallides. We are interested in these compounds because of the wide range of physical properties they possess. While investigating the Ln-Co-Sn system (Ln = lanthanide), we have synthesized single crystals that crystallize in the Yb3Rh4Sn13, Ho7Co6Sn23 and the Tb5Rh6Sn18 structure types. We observe the formation of a particular structure type depending on the size of the lanthanide present. The aforementioned compounds all contain CoSn6 trigonal prisms, which create voids occupied by Ln and Sn polyhedral units. We have also investigated the physical properties of these compounds …


Platforms And Protocols For The Multidimensional Microchip Electrophoretic Analysis Of Complex Proteomes, John K. Osiri Jan 2009

Platforms And Protocols For The Multidimensional Microchip Electrophoretic Analysis Of Complex Proteomes, John K. Osiri

LSU Doctoral Dissertations

The need for rapid, portable and high-throughput systems in proteomics is now prevalent because of demands for generating new protein-based disease biomarkers. However, 2-D protein profile patterns are lending themselves as potential diagnostic tools for biomarker discovery. It is difficult to identify protein biomarkers which are low abundant in the presence of highly abundant proteins, especially in complex biological samples like serum. Protein profiles from 2-D separation of the protein content of cells or body fluids, which are unique to certain physiological or pathological states, are currently available on internet databases. In this work, we demonstrate the ability to separate …


Local Behavior Of Distributions And Applications, Jasson Vindas Jan 2009

Local Behavior Of Distributions And Applications, Jasson Vindas

LSU Doctoral Dissertations

This dissertation studies local and asymptotic properties of distributions (generalized functions) in connection to several problems in harmonic analysis, approximation theory, classical real and complex function theory, tauberian theory, summability of divergent series and integrals, and number theory. In Chapter 2 we give two new proofs of the Prime Number Theory based on ideas from asymptotic analysis on spaces of distributions. Several inverse problems in Fourier analysis and summability theory are studied in detail. Chapter 3 provides a complete characterization of point values of tempered distributions and functions in terms of a generalized pointwise Fourier inversion formula. The relation of …


Multiple Dataset Visualization (Mdv) Framework For Scalar Volume Data, Gaurav Khanduja Jan 2009

Multiple Dataset Visualization (Mdv) Framework For Scalar Volume Data, Gaurav Khanduja

LSU Doctoral Dissertations

Many applications require comparative analysis of multiple datasets representing different samples, conditions, time instants, or views in order to develop a better understanding of the scientific problem/system under consideration. One effective approach for such analysis is visualization of the data. In this PhD thesis, we propose an innovative multiple dataset visualization (MDV) approach in which two or more datasets of a given type are rendered concurrently in the same visualization. MDV is an important concept for the cases where it is not possible to make an inference based on one dataset, and comparisons between many datasets are required to reveal …


Storm Surge Dynamics Over Wide Continental Shelves: Numerical Experiments Using The Finite-Volume Coastal Ocean Model, Joao Lima Rego Jan 2009

Storm Surge Dynamics Over Wide Continental Shelves: Numerical Experiments Using The Finite-Volume Coastal Ocean Model, Joao Lima Rego

LSU Doctoral Dissertations

Storm surge is an abnormal rise of the sea surface caused by atmospheric forcing, including the wind stress and atmospheric pressure associated with extra-tropical and tropical cyclones. Hurricanes and typhoons have a great impact on coastal regions, and can cause severe loss of lives and great damages. A systematic investigation of storm surge impact to the coasts of Louisiana and Texas, where the continental shelf reaches up to 200 km in width, is conducted here using the hydrodynamics Finite-Volume Coastal Ocean Model, FVCOM (Chen et al., 2003). The model is applied to the northern Gulf of Mexico to simulate the …


Impulsive Control Systems, Wei Cai Jan 2009

Impulsive Control Systems, Wei Cai

LSU Doctoral Dissertations

Impulsive control systems arose from classical control systems described by differential equations where the control functions could be unbounded. Passing to the limit of trajectories whose velocities are changing very rapidly leads to the state vector to "jump", or exhibit impulsive behavior. The mathematical model in this thesis uses a differential inclusion and a measure-driven control, and it becomes possible to deal with the discontinuity of movements happening over a small interval. We adopt the formulism of impulsive systems in which the velocities are decomposed by the slow and fast ones. The fast time velocity is expressed as the multiplication …


Achiral, Chiral, And Protein Separations With Molecular Micelles Using Chromatographic Techniques, Candace Ayanna Luces Jan 2009

Achiral, Chiral, And Protein Separations With Molecular Micelles Using Chromatographic Techniques, Candace Ayanna Luces

LSU Doctoral Dissertations

In this dissertation, several chromatographic techniques were developed for separation of proteins as well as achiral and chiral compounds. Firstly, polyelectrolyte multilayer (PEM) coatings were used to separate chiral analytes and proteins of pharmaceutical and biomedical interests. Coating polymers used in PEM coatings are instrumental in analyte separation. Therefore, the effect of changing four different cationic polymers, (poly-L-lysine, poly-L-ornithine, poly-L-lysine-serine, and poly-L-glutamic acid-lysine) and three anionic polymers (sodium poly (N-undecanoyl-L-leucyl-alaninate) (poly-L-SULA), sodium poly (N-undecanoyl-L-leucyl-valinate) (poly-L-SULV) and sodium poly (undecylenic sulfate) (poly-SUS)) were investigated. The simultaneous effects of cationic polymer concentration, number of bilayers, temperature, applied voltage, and pH of the …


Function Spaces, Wavelets And Representation Theory, Jens Gerlach Christensen Jan 2009

Function Spaces, Wavelets And Representation Theory, Jens Gerlach Christensen

LSU Doctoral Dissertations

This dissertation is concerned with the interplay between the theory of Banach spaces and representations of groups. The wavelet transform has proven to be a useful tool in characterizing and constructing Banach spaces, and we investigate a generalization of an already known technique due to H.G. Feichtinger and K. Gröchenig. This generalization is presented in Chapter 3, and in Chapters 4 and 5 we present examples of spaces which can be described using the theory. The first example clears up a question regarding a wavelet characterization of Bergman spaces related to a non-integrable representation. The second example is a wavelet …


Computational Studies Of The Properties Of Copper Oxide Clusters And The Reactions Of Phenol And Chlorinated Phenols With Copper Oxide Clusters, Gyun-Tack Bae Jan 2009

Computational Studies Of The Properties Of Copper Oxide Clusters And The Reactions Of Phenol And Chlorinated Phenols With Copper Oxide Clusters, Gyun-Tack Bae

LSU Doctoral Dissertations

We used ab initio simulations and calculations to study the structures and stabilities of copper oxide clusters, CunOn (n=1-8) and CuOn (n=1-6). The lowest energy structures of neutral and charged copper oxide clusters were determined using primarily the B3LYP/LANL2DZ model chemistry. In CunOn clusters with n=1-8, a transition from planar to nonplanar geometries occurs at n=4. In CuOn clusters with n=1-6, all geometries of neutral, positively, and negatively charged clusters are planar or near planar structures. Selected electronic properties, including binding energies, ionization energies, and electronic affinities, were calculated and examined as a function of n. Stabilities were examined by …


A Multi-Proxy Approach To Investigating The Latest Holocene (~4,500 Yrs. Bp) Vegetational History Of Catahoula Lake, Louisiana, Rebecca Ann Tedford Jan 2009

A Multi-Proxy Approach To Investigating The Latest Holocene (~4,500 Yrs. Bp) Vegetational History Of Catahoula Lake, Louisiana, Rebecca Ann Tedford

LSU Doctoral Dissertations

A multi-proxy investigation of sediments examined from Catahoula Lake, Louisiana has provided a record of late-Holocene vegetational changes, related to both hydrology and climate. This study integrates data from phytoliths, pollen, stable isotopes, magnetic susceptibility, and core sediment analysis. A modern phytolith analog assessed the phytoliths production in local plants and their modern soil sample distribution within the established lake vegetation zones. Fifty of the 76 species produced both distinctive and redundant phytoliths. The modern soil sample database indicates that phytoliths produced from both monocotyledon and dicotlyledon plant groups prove useful in distinguishing between forest and grassland communities and identifying …


Bottom Boundary Layer Physics And Sediment Transport Along A Transgressive Sand Body, Ship Shoal, South-Central Louisiana: Implications For Fluvial Sediments And Winter Storms, Daijiro Kobashi Jan 2009

Bottom Boundary Layer Physics And Sediment Transport Along A Transgressive Sand Body, Ship Shoal, South-Central Louisiana: Implications For Fluvial Sediments And Winter Storms, Daijiro Kobashi

LSU Doctoral Dissertations

Ship Shoal, a shore-parallel sand body, was recently recognized as having a unique physical and biological environment and also as a potential sand resource for coastal restoration in coastal Louisiana. Little is known regarding such dynamics, in concert with fluvial sediments and winter storms, influenced in unique ecosystems, and likely in future potential sand mining. This dissertation addresses such the morphodynamics and sedimentary processes and their implications for the mining from the shoal using field measurements and numerical modeling studies. During the winter-spring season, fluvial sediment plumes shifted from the prevailing west to southeast during the post-frontal phases, resulted in …


Proxy Records Of Paleohurricanes For The Western And Southern Caribbean, Terrence Allen Mccloskey Jan 2009

Proxy Records Of Paleohurricanes For The Western And Southern Caribbean, Terrence Allen Mccloskey

LSU Doctoral Dissertations

This dissertation evaluates the hypothesis that hurricane activity levels in the North Atlantic during the late Holocene have been driven by latitudinal movements of the North Atlantic circulation system. Multi-millennial sedimentary proxy records, based on the occurrence of overwash clastic layers, provide clear evidence of abruptly alternating periods of hurricane landfall frequency for Nicaragua and Belize. Three Belizean transects exhibit an Active period (hyperactivity) occurring from ~2000-6000 cal yr BP, although dating is inconsistent across the transects. An Active period covering the last 500 years is found at one location. The Nicaraguan record, derived from three transects covering >90 km …


Atom-Based Computer Simulation Studies Of Gas-To-Liquid Nucleation In Atmospherically Relevant Systems: Clarifying Discrepancies And Elucidating Mechanisms, Ricky Bendanillo Nellas Jan 2009

Atom-Based Computer Simulation Studies Of Gas-To-Liquid Nucleation In Atmospherically Relevant Systems: Clarifying Discrepancies And Elucidating Mechanisms, Ricky Bendanillo Nellas

LSU Doctoral Dissertations

For over a century, nucleation for all systems was thought simplistically to be a process that advances through the formation of critical clusters with a well-defined composition. Our results show intriguing nucleation mechanisms that challenge the aforementioned notion. We employed the simple TraPPE-UA (transferable potential for phase equilibria – united atom) force field and the AVUS-HR approach (a combination of aggregation-volume-bias Monte Carlo, umbrella sampling, and histogram reweighting), to investigate the homogeneous vapor-to-liquid nucleation of various nucleating systems. We found out that these systems could nucleate through a variety of unique non-ideal mechanisms. Alongside existing experimental investigations, this dissertation presents …


Barrier Island Migration Over A Consolidating Substrate, Julie Dean Rosati Jan 2009

Barrier Island Migration Over A Consolidating Substrate, Julie Dean Rosati

LSU Doctoral Dissertations

Barrier islands that overlie a compressible substrate load and consolidate the underlying subsurface. Through time, the elevation and aerial extent of these islands are reduced, making them more susceptible to inundation and overwash. Sand washed over the island and onto back-barrier marsh or into the bay or estuary begins the consolidation process on a previously non-loaded substrate, with time-dependent consolidation a function of the magnitude of the load, duration of load, and characteristics of the substrate. The result is an increase in the overwash, migration, breaching, and segmentation of these islands. This research determined the degree to which consolidation affects …


A Modular Approach To Lung Nodule Detection From Computed Tomography Images Using Artificial Neural Networks And Content Based Image Representation, Omer Muhammet Soysal Jan 2009

A Modular Approach To Lung Nodule Detection From Computed Tomography Images Using Artificial Neural Networks And Content Based Image Representation, Omer Muhammet Soysal

LSU Doctoral Dissertations

Lung cancer is one of the most lethal cancer types. Research in computer aided detection (CAD) and diagnosis for lung cancer aims at providing effective tools to assist physicians in cancer diagnosis and treatment to save lives. In this dissertation, we focus on developing a CAD framework for automated lung cancer nodule detection from 3D lung computed tomography (CT) images. Nodule detection is a challenging task that no machine intelligence can surpass human capability to date. In contrast, human recognition power is limited by vision capacity and may suffer from work overload and fatigue, whereas automated nodule detection systems can …


Matter Sources Interacting With A Black Hole: Dynamics And Observable Signatures, Miguel Megevand Jan 2009

Matter Sources Interacting With A Black Hole: Dynamics And Observable Signatures, Miguel Megevand

LSU Doctoral Dissertations

Dynamical systems involving black holes are one of the most promising sources of detectable gravitational waves. Additionally, one expects strong electromagnetic signals whenever matter sources are present. In this dissertation, we study different astrophysical scenarios pertaining the interaction of matter with a black hole. We first investigate the possibility to localize scalar field configurations surrounding a (dynamic) black hole. The analytical study is illustrated by performing numerical simulations that show the evolution of a Klein-Gordon-like scalar field shell surrounding a black hole. Second, we present a method to estimate the gravitational wave frequency at the end of the inspiral phase …


Methods And Design Issues For Next Generation Network-Aware Applications, Andrei Hutanu Jan 2009

Methods And Design Issues For Next Generation Network-Aware Applications, Andrei Hutanu

LSU Doctoral Dissertations

Networks are becoming an essential component of modern cyberinfrastructure and this work describes methods of designing distributed applications for high-speed networks to improve application scalability, performance and capabilities. As the amount of data generated by scientific applications continues to grow, to be able to handle and process it, applications should be designed to use parallel, distributed resources and high-speed networks. For scalable application design developers should move away from the current component-based approach and implement instead an integrated, non-layered architecture where applications can use specialized low-level interfaces. The main focus of this research is on interactive, collaborative visualization of large …


Cbod₅ Treatment And Nitrogen Transformations Of The Marshland Upwelling System In Intermediate And Saltwater Marshes, Lorna Anne Putnam Jan 2009

Cbod₅ Treatment And Nitrogen Transformations Of The Marshland Upwelling System In Intermediate And Saltwater Marshes, Lorna Anne Putnam

LSU Doctoral Dissertations

The marshland upwelling system (MUS) was designed to treat domestic wastewater from coastal dwellings where conventional methods are inadequate due to high water tables, poor hydraulic soil conditions, anaerobic soils, and saline groundwater. Currently there is no adequate treatment system available and coastal dwellings are contributing to water quality problems. This study focused on determining the treatment effectiveness of the MUS for organic matter and understanding the specific processes involved in nitrogen treatment.

The treatment of organic matter, measured as five-day carbonaceous biological oxygen demand (CBOD5), was effective in field tests for both saltwater and intermediate marshes. Global …


Remediating Impacts Of Global Climate Change-Induced Submergence On Salt Marsh Ecosystem Functions, Camille Lafosse Stagg Jan 2009

Remediating Impacts Of Global Climate Change-Induced Submergence On Salt Marsh Ecosystem Functions, Camille Lafosse Stagg

LSU Doctoral Dissertations

Impacts of global climate change, such as sea level rise and severe drought, have altered the hydrology of coastal salt marshes resulting in submergence and subsequent degradation of ecosystem function. A potential method of rehabilitating these systems is the addition of sediment-slurries to increase the elevation of the marsh surface, thus ameliorating the effects of excessive inundation. Although this technique is growing in popularity, the successful restoration of ecological function after sediment addition has received little attention. The purpose of this research was to determine if sediment subsidized salt marshes are functionally equivalent to natural marshes and whether salt marshes …


Experimental Design, Synthesis And Application Of Molecular Micelle Modified Polymeric Nanoparticles For Drug Delivery Systems And Free Radical Detection, Gabriela M. Ganea Visser Jan 2009

Experimental Design, Synthesis And Application Of Molecular Micelle Modified Polymeric Nanoparticles For Drug Delivery Systems And Free Radical Detection, Gabriela M. Ganea Visser

LSU Doctoral Dissertations

Biodegradable and biocompatible polymeric nanoparticles such as poly (lactide-co-glycolide) (PLGA) nanoparticles have been extensively studied as drug delivery systems for a variety of pharmaceutical agents. Nanoparticle surface properties are primarily determined by the emulsifiers used in the synthesis process, which have a significant impact on nanoparticle physico-chemical and biological properties. Anionic amino acid – based molecular micelles were used in the emulsification process to prepare monodisperse, small (below 100 nm) PLGA nanoparticles with a well defined spherical shape. Such molecular micelle – modified nanoparticles were used as drug carriers for delivery of antioxidants. Thymoquinone is a natural antioxidant, and an …


On-Line Laser Desorption/Ionization Mass Spectrometry, Damien A. Narcisse Jan 2009

On-Line Laser Desorption/Ionization Mass Spectrometry, Damien A. Narcisse

LSU Doctoral Dissertations

Interfaces for on-line laser desorption/ionization mass spectrometry are presented in this dissertation. An on line laser desorption interface allows samples to be introduced directly into the mass spectrometer for high-throughput applications. For this research, a linear time of flight mass spectrometer was constructed with an ionization source designed to accept various laser desorption interfaces. A ball inlet interface was used for continuous analyte deposition at atmospheric pressure and vacuum ionization. A solvent-based cleaning system and a separate capillary for MALDI matrix delivery was utilized for continuous on line sampling with the ball inlet interface. Microfluidic devices were brought into contact …


Quantum Nonlinear Optics: Applications To Quantum Metrology, Imaging, And Information, Ryan Glasser Jan 2009

Quantum Nonlinear Optics: Applications To Quantum Metrology, Imaging, And Information, Ryan Glasser

LSU Doctoral Dissertations

The fields of quantum and nonlinear optics have given rise to a variety of nonclassical states of light that have been proven to surpass certain limitations set by classical physics. Namely, certain squeezed and entangled states have been shown to beat the shot-noise limit when making precision phase measurements in interferometry, as well as write lithographic patterns that are smaller than classically allowed by the Rayleigh diffraction limit. Additionally, single-photon sources and entangled photon pairs have given rise to provably secure quantum key distribution for cryptography. Producing these quantum states of light has proven a difficult task. Nonlinear crystals, when …


Some Results On Cubic Graphs, Evan Morgan Jan 2009

Some Results On Cubic Graphs, Evan Morgan

LSU Doctoral Dissertations

Pursuing a question of Oxley, we investigate whether the edge set of a graph admits a bipartition so that the contraction of either partite set produces a series-parallel graph. While Oxley's question in general remains unanswered, our investigations led to two graph operations (Chapters 2 and 4) which are of independent interest. We present some partial results toward Oxley's question in Chapter 3. The central results of the dissertation involve an operation on cubic graphs called the switch; in the literature, a similar operation is known as the edge slide. In Chapter 2, the author proves that we can transform, …


The Segal-Bargmann Transform On Inductive Limits Of Compact Symmetric Spaces, Keng Wiboonton Jan 2009

The Segal-Bargmann Transform On Inductive Limits Of Compact Symmetric Spaces, Keng Wiboonton

LSU Doctoral Dissertations

We construct the Segal-Bargmann transform on the direct limit of the Hilbert spaces $\{L^2(M_n)^{K_n}\}_n$ where $\{M_n = U_n/K_n\}_n$ is a propagating sequence of symmetric spaces of compact type with the assumption that $U_n$ is simply connected for each $n$. This map is obtained by taking the direct limit of the Segal-Bargmann tranforms on $L^2(M_n)^{K_n}, \ n = 1,2,...$. For each $n$, let $\widehat{U_n}$ be the set of equivalence classes of irreducible unitary representations of $U_n$ and let $\widehat{U_n/K_n} \subseteq \widehat{U_n}$ be the set of $K_n$-spherical representations. The definition of the propagation gives a nice property allowing us to embed $\widehat{U_n/K_n}$ …


Polymer-Based Microfluidic Devices For High Throughput Single Molecule Detection: Applications In Biological And Drug Discovery, Paul Ichide Okagbare Jan 2009

Polymer-Based Microfluidic Devices For High Throughput Single Molecule Detection: Applications In Biological And Drug Discovery, Paul Ichide Okagbare

LSU Doctoral Dissertations

The realization of high throughput sample processing has become a primary ambition in many research applications with an example being high throughput screening (HTS), which represents the first step in the drug discovery pipeline. Microfluidics is a viable platform for parallel processing of biochemical reactions to increase data production rates due to its ability to generate fluidic networks with a high number of processors over small footprints suitable for optical imaging. Single-molecule detection (SMD) is another technology which has emerged to facilitate the realization of high throughput data processing afforded by its ability to eliminate sample processing steps and generate …


Applying Scanning Probe Microscopy For The Investigation Of Molecular Self-Assembly Mechanisms And Properties Of Designed Nanomaterials, Algernon Tremayne Kelley Jan 2009

Applying Scanning Probe Microscopy For The Investigation Of Molecular Self-Assembly Mechanisms And Properties Of Designed Nanomaterials, Algernon Tremayne Kelley

LSU Doctoral Dissertations

Scanning probe microscopy (SPM) for conducting surface characterizations of nanomaterials and molecular self-assembly processes is emerging as an important contribution in nanotechnology, especially towards the design of molecular electronic devices. Another area of importance is the characterization of the properties of nanomaterials for fundamental understanding of structure-function inter-relationships. Understanding the properties and behavior of molecules and finding approaches to control surface self-organization through nanolithography provides essential information for the development of workable applications for nanotechnology. This dissertation describes the methodologies of AFM for characterizing molecules and nanostructures produced with scanning probe lithography (SPL). Automated software for nanografting and nanoshaving produce …