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Full-Text Articles in Physical Sciences and Mathematics
An Autoencoder-Based Deep Learning Method For Genotype Imputation, Meng Song, Jonathan Greenbaum, Joseph Luttrell Iv, Weihua Zhou, Chong Wu, Zhe Luo, Chuan Qiu, Lan Juan Zhao, Kuan-Jui Su, Qing Tian, Hui Shen, Huixiao Hong, Ping Gong, Xinghua Shi, Hong-Wen Deng, Chaoyang Zhang
An Autoencoder-Based Deep Learning Method For Genotype Imputation, Meng Song, Jonathan Greenbaum, Joseph Luttrell Iv, Weihua Zhou, Chong Wu, Zhe Luo, Chuan Qiu, Lan Juan Zhao, Kuan-Jui Su, Qing Tian, Hui Shen, Huixiao Hong, Ping Gong, Xinghua Shi, Hong-Wen Deng, Chaoyang Zhang
Faculty Publications
Genotype imputation has a wide range of applications in genome-wide association study (GWAS), including increasing the statistical power of association tests, discovering trait-associated loci in meta-analyses, and prioritizing causal variants with fine-mapping. In recent years, deep learning (DL) based methods, such as sparse convolutional denoising autoencoder (SCDA), have been developed for genotype imputation. However, it remains a challenging task to optimize the learning process in DL-based methods to achieve high imputation accuracy. To address this challenge, we have developed a convolutional autoencoder (AE) model for genotype imputation and implemented a customized training loop by modifying the training process with a …
Considerations For Radio Frequency Fingerprinting Across Multiple Frequency Channels, Jose A. Gutierrez Del Arroyo, Brett J. Borghetti, Michael A. Temple
Considerations For Radio Frequency Fingerprinting Across Multiple Frequency Channels, Jose A. Gutierrez Del Arroyo, Brett J. Borghetti, Michael A. Temple
Faculty Publications
Radio Frequency Fingerprinting (RFF) is often proposed as an authentication mechanism for wireless device security, but application of existing techniques in multi-channel scenarios is limited because prior models were created and evaluated using bursts from a single frequency channel without considering the effects of multi-channel operation. Our research evaluated the multi-channel performance of four single-channel models with increasing complexity, to include a simple discriminant analysis model and three neural networks. Performance characterization using the multi-class Matthews Correlation Coefficient (MCC) revealed that using frequency channels other than those used to train the models can lead to a deterioration in performance from …
A Survey Of Blind Modulation Classification Techniques For Ofdm Signals, Anand Kumar, Sudhan Majhi, Guan Gui, Hsiao-Chun Wu, Chau Yuen
A Survey Of Blind Modulation Classification Techniques For Ofdm Signals, Anand Kumar, Sudhan Majhi, Guan Gui, Hsiao-Chun Wu, Chau Yuen
Faculty Publications
Blind modulation classification (MC) is an integral part of designing an adaptive or intelligent transceiver for future wireless communications. Blind MC has several applications in the adaptive and automated systems of sixth generation (6G) communications to improve spectral efficiency and power efficiency, and reduce latency. It will become a integral part of intelligent software-defined radios (SDR) for future communication. In this paper, we provide various MC techniques for orthogonal frequency division multiplexing (OFDM) signals in a systematic way. We focus on the most widely used statistical and machine learning (ML) models and emphasize their advantages and limitations. The statistical-based blind …
St-V-Net: Incorporating Shape Prior Into Convolutional Neural Netwoks For Proximal Femur Segmentation, Chen Zhao, Joyce H. Keyak, Jinshan Tang, Tadashi S. Kaneko, Sundeep Khosla, Shreyasee Amin, Elizabeth J. Atkinson, Lan-Juan Zhao, Michael J. Serou, Chaoyang Zhang, Hui Shen, Hong-Wen Deng, Weihua Zhou
St-V-Net: Incorporating Shape Prior Into Convolutional Neural Netwoks For Proximal Femur Segmentation, Chen Zhao, Joyce H. Keyak, Jinshan Tang, Tadashi S. Kaneko, Sundeep Khosla, Shreyasee Amin, Elizabeth J. Atkinson, Lan-Juan Zhao, Michael J. Serou, Chaoyang Zhang, Hui Shen, Hong-Wen Deng, Weihua Zhou
Faculty Publications
We aim to develop a deep-learning-based method for automatic proximal femur segmentation in quantitative computed tomography (QCT) images. We proposed a spatial transformation V-Net (ST-V-Net), which contains a V-Net and a spatial transform network (STN) to extract the proximal femur from QCT images. The STN incorporates a shape prior into the segmentation network as a constraint and guidance for model training, which improves model performance and accelerates model convergence. Meanwhile, a multi-stage training strategy is adopted to fine-tune the weights of the ST-V-Net. We performed experiments using a QCT dataset which included 397 QCT subjects. During the experiments for the …
The Effects Of Individual Differences, Non‐Stationarity, And The Importance Of Data Partitioning Decisions For Training And Testing Of Eeg Cross‐Participant Models, Alexander J. Kamrud [*], Brett J. Borghetti, Christine M. Schubert Kabban
The Effects Of Individual Differences, Non‐Stationarity, And The Importance Of Data Partitioning Decisions For Training And Testing Of Eeg Cross‐Participant Models, Alexander J. Kamrud [*], Brett J. Borghetti, Christine M. Schubert Kabban
Faculty Publications
EEG-based deep learning models have trended toward models that are designed to perform classification on any individual (cross-participant models). However, because EEG varies across participants due to non-stationarity and individual differences, certain guidelines must be followed for partitioning data into training, validation, and testing sets, in order for cross-participant models to avoid overestimation of model accuracy. Despite this necessity, the majority of EEG-based cross-participant models have not adopted such guidelines. Furthermore, some data repositories may unwittingly contribute to the problem by providing partitioned test and non-test datasets for reasons such as competition support. In this study, we demonstrate how improper …
Defect Detection In Atomic Resolution Transmission Electron Microscopy Images Using Machine Learning, Philip Cho, Aihua W. Wood, Krishnamurthy Mahalingam, Kurt Eyink
Defect Detection In Atomic Resolution Transmission Electron Microscopy Images Using Machine Learning, Philip Cho, Aihua W. Wood, Krishnamurthy Mahalingam, Kurt Eyink
Faculty Publications
Point defects play a fundamental role in the discovery of new materials due to their strong influence on material properties and behavior. At present, imaging techniques based on transmission electron microscopy (TEM) are widely employed for characterizing point defects in materials. However, current methods for defect detection predominantly involve visual inspection of TEM images, which is laborious and poses difficulties in materials where defect related contrast is weak or ambiguous. Recent efforts to develop machine learning methods for the detection of point defects in TEM images have focused on supervised methods that require labeled training data that is generated via …
Heterogeneous Multi-Layered Network Model For Omics Data Integration And Analysis, Bohyun Lee, Shuo Zhang, Aleksandar Poleksic, Lei Xie
Heterogeneous Multi-Layered Network Model For Omics Data Integration And Analysis, Bohyun Lee, Shuo Zhang, Aleksandar Poleksic, Lei Xie
Faculty Publications
Advances in next-generation sequencing and high-throughput techniques have enabled the generation of vast amounts of diverse omics data. These big data provide an unprecedented opportunity in biology, but impose great challenges in data integration, data mining, and knowledge discovery due to the complexity, heterogeneity, dynamics, uncertainty, and high-dimensionality inherited in the omics data. Network has been widely used to represent relations between entities in biological system, such as protein-protein interaction, gene regulation, and brain connectivity (i.e. network construction) as well as to infer novel relations given a reconstructed network (aka link prediction). Particularly, heterogeneous multi-layered network (HMLN) has proven successful …
Computational Screening Of New Perovskite Materials Using Transfer Learning And Deep Learning, Xiang Li, Yabo Dan, Rongzhi Dong, Zhuo Cao, Chengcheng Niu, Yuqi Song, Shaobo Li, Jianjun Hu
Computational Screening Of New Perovskite Materials Using Transfer Learning And Deep Learning, Xiang Li, Yabo Dan, Rongzhi Dong, Zhuo Cao, Chengcheng Niu, Yuqi Song, Shaobo Li, Jianjun Hu
Faculty Publications
As one of the most studied materials, perovskites exhibit a wealth of superior properties that lead to diverse applications. Computational prediction of novel stable perovskite structures has big potential in the discovery of new materials for solar panels, superconductors, thermal electric, and catalytic materials, etc. By addressing one of the key obstacles of machine learning based materials discovery, the lack of sufficient training data, this paper proposes a transfer learning based approach that exploits the high accuracy of the machine learning model trained with physics-informed structural and elemental descriptors. This gradient boosting regressor model (the transfer learning model) allows us …
A Review Of Text Corpus-Based Tourism Big Data Mining, Qin Lin, Shaobo Li, Sen Zhang, Jie Hu, Jianjun Hu
A Review Of Text Corpus-Based Tourism Big Data Mining, Qin Lin, Shaobo Li, Sen Zhang, Jie Hu, Jianjun Hu
Faculty Publications
With the massive growth of the Internet, text data has become one of the main formats of tourism big data. As an effective expression means of tourists’ opinions, text mining of such data has big potential to inspire innovations for tourism practitioners. In the past decade, a variety of text mining techniques have been proposed and applied to tourism analysis to develop tourism value analysis models, build tourism recommendation systems, create tourist profiles, and make policies for supervising tourism markets. The successes of these techniques have been further boosted by the progress of natural language processing (NLP), machine learning, and …
A Review Of Text Corpus-Based Tourism Big Data Mining, Qin Li, Shaobo Li, Sen Zhang, Jie Hu, Jianhun Hu
A Review Of Text Corpus-Based Tourism Big Data Mining, Qin Li, Shaobo Li, Sen Zhang, Jie Hu, Jianhun Hu
Faculty Publications
With the massive growth of the Internet, text data has become one of the main formats of tourism big data. As an effective expression means of tourists’ opinions, text mining of such data has big potential to inspire innovations for tourism practitioners. In the past decade, a variety of text mining techniques have been proposed and applied to tourism analysis to develop tourism value analysis models, build tourism recommendation systems, create tourist profiles, and make policies for supervising tourism markets. The successes of these techniques have been further boosted by the progress of natural language processing (NLP), machine learning, and …
Deep Autoencoder Neural Networks For Short-Term Traffic Congestion Prediction Of Transportation Networks, Sen Zhang, Yong Yao, Jie Hu, Yong Zhao, Shaobo Li, Jianjun Hu
Deep Autoencoder Neural Networks For Short-Term Traffic Congestion Prediction Of Transportation Networks, Sen Zhang, Yong Yao, Jie Hu, Yong Zhao, Shaobo Li, Jianjun Hu
Faculty Publications
Traffic congestion prediction is critical for implementing intelligent transportation systems for improving the efficiency and capacity of transportation networks. However, despite its importance, traffic congestion prediction is severely less investigated compared to traffic flow prediction, which is partially due to the severe lack of large-scale high-quality traffic congestion data and advanced algorithms. This paper proposes an accessible and general workflow to acquire large-scale traffic congestion data and to create traffic congestion datasets based on image analysis. With this workflow we create a dataset named Seattle Area Traffic Congestion Status (SATCS) based on traffic congestion map snapshots from a publicly available …
Transfer Learning With Deep Recurrent Neural Networks For Remaining Useful Life Estimation, Ansi Zhang, Shaobo Li, Yuxin Cui, Zhonghao Liu, Guanci Yang, Jianjun Hu
Transfer Learning With Deep Recurrent Neural Networks For Remaining Useful Life Estimation, Ansi Zhang, Shaobo Li, Yuxin Cui, Zhonghao Liu, Guanci Yang, Jianjun Hu
Faculty Publications
Prognostics, such as remaining useful life (RUL) prediction, is a crucial task in condition-based maintenance. A major challenge in data-driven prognostics is the difficulty of obtaining a sufficient number of samples of failure progression. However, for traditional machine learning methods and deep neural networks, enough training data is a prerequisite to train good prediction models. In this work, we proposed a transfer learning algorithm based on Bi-directional Long Short-Term Memory (BLSTM) recurrent neural networks for RUL estimation, in which the models can be first trained on different but related datasets and then fine-tuned by the target dataset. Extensive experimental results …
Transfer Learning With Deep Recurrent Neural Networks For Remaining Useful Life Estimation, Ansi Zhang, Honglei Wang, Shaobo Li, Yuxin Cui, Guanci Yang, Jianjun Hu
Transfer Learning With Deep Recurrent Neural Networks For Remaining Useful Life Estimation, Ansi Zhang, Honglei Wang, Shaobo Li, Yuxin Cui, Guanci Yang, Jianjun Hu
Faculty Publications
Prognostics, such as remaining useful life (RUL) prediction, is a crucial task in condition-based maintenance. A major challenge in data-driven prognostics is the difficulty of obtaining a sufficient number of samples of failure progression. However, for traditional machine learning methods and deep neural networks, enough training data is a prerequisite to train good prediction models. In this work, we proposed a transfer learning algorithm based on Bi-directional Long Short-Term Memory (BLSTM) recurrent neural networks for RUL estimation, in which the models can be first trained on different but related datasets and then fine-tuned by the target dataset. Extensive experimental results …
End-To-End Convolutional Neural Network Model For Gear Fault Diagnosis Based On Sound Signals, Yong Yao, Honglei Wang, Shaobo Li, Zhongnhao Liu, Gui Gui, Yabo Dan, Jianjun Hu
End-To-End Convolutional Neural Network Model For Gear Fault Diagnosis Based On Sound Signals, Yong Yao, Honglei Wang, Shaobo Li, Zhongnhao Liu, Gui Gui, Yabo Dan, Jianjun Hu
Faculty Publications
Currently gear fault diagnosis is mainly based on vibration signals with a few studies on acoustic signal analysis. However, vibration signal acquisition is limited by its contact measuring while traditional acoustic-based gear fault diagnosis relies heavily on prior knowledge of signal processing techniques and diagnostic expertise. In this paper, a novel deep learning-based gear fault diagnosis method is proposed based on sound signal analysis. By establishing an end-to-end convolutional neural network (CNN), the time and frequency domain signals can be fed into the model as raw signals without feature engineering. Moreover, multi-channel information from different microphones can also be fused …
Product Innovation Design Based On Deep Learning And Kansei Engineering, Huafeng Quan, Shaobo Li, Jianjun Hu
Product Innovation Design Based On Deep Learning And Kansei Engineering, Huafeng Quan, Shaobo Li, Jianjun Hu
Faculty Publications
Creative product design is becoming critical to the success of many enterprises. However, the conventional product innovation process is hindered by two major challenges: the difficulty to capture users’ preferences and the lack of intuitive approaches to visually inspire the designer, which is especially true in fashion design and form design of many other types of products. In this paper, we propose to combine Kansei engineering and the deep learning for product innovation (KENPI) framework, which can transfer color, pattern, etc. of a style image in real time to a product’s shape automatically. To capture user preferences, we combine Kansei …
Patent Keyword Extraction Algorithm Based On Distributed Representation For Patent Classification, Jie Hu, Shaobo Li, Yong Yao, Liya Yu, Guanci Yang, Jianjun Hu
Patent Keyword Extraction Algorithm Based On Distributed Representation For Patent Classification, Jie Hu, Shaobo Li, Yong Yao, Liya Yu, Guanci Yang, Jianjun Hu
Faculty Publications
Many text mining tasks such as text retrieval, text summarization, and text comparisons depend on the extraction of representative keywords from the main text. Most existing keyword extraction algorithms are based on discrete bag-of-words type of word representation of the text. In this paper, we propose a patent keyword extraction algorithm (PKEA) based on the distributed Skip-gram model for patent classification. We also develop a set of quantitative performance measures for keyword extraction evaluation based on information gain and cross-validation, based on Support Vector Machine (SVM) classification, which are valuable when human-annotated keywords are not available. We used a standard …
An Ensemble Deep Convolutional Neural Network Model With Improved D-S Evidence Fusion For Bearing Fault Diagnosis, Shaobo Li, Guoka Liu, Xianghong Tang, Jianguang Lu, Jianjun Hu
An Ensemble Deep Convolutional Neural Network Model With Improved D-S Evidence Fusion For Bearing Fault Diagnosis, Shaobo Li, Guoka Liu, Xianghong Tang, Jianguang Lu, Jianjun Hu
Faculty Publications
Intelligent machine health monitoring and fault diagnosis are becoming increasingly important for modern manufacturing industries. Current fault diagnosis approaches mostly depend on expert-designed features for building prediction models. In this paper, we proposed IDSCNN, a novel bearing fault diagnosis algorithm based on ensemble deep convolutional neural networks and an improved Dempster–Shafer theory based evidence fusion. The convolutional neural networks take the root mean square (RMS) maps from the FFT (Fast Fourier Transformation) features of the vibration signals from two sensors as inputs. The improved D-S evidence theory is implemented via distance matrix from evidences and modified Gini Index. Extensive evaluations …